Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G25754 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.4e-305 1050.8 515 100.0
AT5G25757 Arabidopsis thaliana HOM05D004668 ORTHO05D006460 3.4e-305 1050.8 515 100.0
AL6G37550 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 3.6e-283 977.6 523 93.3
AL3G41810 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 6.8e-282 973.4 511 94.5
BcaNung04843 Brassica carinata HOM05D004668 ORTHO05D006460 1.1e-276 956.1 525 89.7
Thhalv10004012m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 3.6e-275 951.0 518 90.0
Carub.0006s2352 Capsella rubella HOM05D004668 ORTHO05D006460 6.2e-275 950.3 523 89.9
A06p36360 Brassica napus HOM05D004668 ORTHO05D006460 8.1e-275 949.9 525 88.8
BraA06t26560Z Brassica rapa HOM05D004668 ORTHO05D006460 8.1e-275 949.9 525 88.8
Thhalv10003996m.g Eutrema salsugineum HOM05D004668 ORTHO05D006460 1.8e-274 948.7 525 89.1
BolC7t44746H Brassica oleracea HOM05D004668 ORTHO05D006460 2.4e-274 948.3 525 88.8
BcaNung03928 Brassica carinata HOM05D004668 ORTHO05D006460 4.0e-274 947.6 525 88.8
C07p42150 Brassica napus HOM05D004668 ORTHO05D006460 4.0e-274 947.6 525 88.8
Aa31LG11G4750 Aethionema arabicum HOM05D004668 ORTHO05D006460 3.4e-273 944.5 528 88.1
BcaB04g19770 Brassica carinata HOM05D004668 ORTHO05D006460 4.4e-273 944.1 522 88.7
Carub.0006s2353 Capsella rubella HOM05D004668 ORTHO05D006460 7.1e-271 936.8 523 88.3
THA.LOC104799201 Tarenaya hassleriana HOM05D004668 ORTHO05D006460 3.3e-268 927.9 529 85.6
Manes.16G069151 Manihot esculenta HOM05D004668 ORTHO05D006460 5.4e-263 910.6 517 85.3
Prupe.1G451600 Prunus persica HOM05D004668 ORTHO05D006460 2.7e-262 908.3 506 86.8
Eucgr.C02897 Eucalyptus grandis HOM05D004668 ORTHO05D006460 1.1e-260 902.9 533 82.9
Nitab4.5_0009807g0010 Nicotiana tabacum HOM05D004668 ORTHO05D006460 2.5e-260 901.7 519 83.8
Potri.006G241300 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.5e-260 901.7 521 83.9
arahy.Tifrunner.gnm1.ann1.1GG9S8 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.8e-259 898.3 514 84.6
arahy.Tifrunner.gnm1.ann1.ID3432 Arachis hypogaea HOM05D004668 ORTHO05D006460 2.8e-259 898.3 514 84.6
VMungo1309G0977 Vigna mungo HOM05D004668 ORTHO05D006460 4.8e-259 897.5 514 84.4
Ciclev10007989m.g Citrus clementina HOM05D004668 ORTHO05D006460 6.2e-259 897.1 526 83.1
QL12p029595 Quercus lobata HOM05D004668 ORTHO05D006460 6.2e-259 897.1 499 86.6
Glyma.06G082500 Glycine max HOM05D004668 ORTHO05D006460 6.9e-258 893.6 511 84.7
Glyma.04G080800 Glycine max HOM05D004668 ORTHO05D006460 2.0e-257 892.1 516 83.9
PGR044G2637 Punica granatum HOM05D004668 ORTHO05D006460 3.4e-257 891.3 526 83.1
Thecc.09G041000 Theobroma cacao HOM05D004668 ORTHO05D006460 4.5e-257 891.0 522 83.1
MD15G1096700 Malus domestica HOM05D004668 ORTHO05D006460 5.8e-257 890.6 506 85.0
DCAR_007707 Daucus carota HOM05D004668 ORTHO05D006460 9.9e-257 889.8 515 83.7
Gohir.A06G095600 Gossypium hirsutum HOM05D004668 ORTHO05D006460 9.9e-257 889.8 522 83.5
Gorai.010G110200 Gossypium raimondii HOM05D004668 ORTHO05D006460 9.9e-257 889.8 522 83.5
Lj1g0002470 Lotus japonicus HOM05D004668 ORTHO05D006460 1.3e-256 889.4 516 83.5
Phvul.009G106900 Phaseolus vulgaris HOM05D004668 ORTHO05D006460 1.7e-256 889.0 514 83.7
Cfa013349 Carpinus fangiana HOM05D004668 ORTHO05D006460 2.2e-256 888.6 500 85.2
Cc08_g09100 Coffea canephora HOM05D004668 ORTHO05D006460 2.2e-256 888.6 520 82.5
MD08G1117100 Malus domestica HOM05D004668 ORTHO05D006460 3.8e-256 887.9 506 85.0
CiPaw.07G206300 Carya illinoinensis HOM05D004668 ORTHO05D006460 4.9e-256 887.5 524 82.1
CANSAT25G3625 Cannabis sativa HOM05D004668 ORTHO05D006460 8.4e-256 886.7 522 82.8
Gorai.009G051100 Gossypium raimondii HOM05D004668 ORTHO05D006460 1.4e-255 885.9 522 82.8
Rhsim07G0153100 Rhododendron simsii HOM05D004668 ORTHO05D006460 1.4e-255 885.9 521 82.5
Atru.chr7.2149 Acer truncatum HOM05D004668 ORTHO05D006460 1.9e-255 885.6 517 83.4
Solyc08g068340.3 Solanum lycopersicum HOM05D004668 ORTHO05D006460 1.9e-255 885.6 519 82.3
Sopen08g022190 Solanum pennellii HOM05D004668 ORTHO05D006460 1.9e-255 885.6 519 82.3
CSS0043453 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 2.4e-255 885.2 518 83.2
PGSC0003DMG400010841 Solanum tuberosum HOM05D004668 ORTHO05D006460 2.4e-255 885.2 519 82.1
Dinv30261 Davidia involucrata HOM05D004668 ORTHO05D006460 3.2e-255 884.8 519 82.3
Migut.A00230 Erythranthe guttata HOM05D004668 ORTHO05D006460 3.2e-255 884.8 520 83.5
Lj8A596T25 Lonicera japonica HOM05D004668 ORTHO05D006460 3.2e-255 884.8 520 82.5
Gohir.D06G095700 Gossypium hirsutum HOM05D004668 ORTHO05D006460 4.2e-255 884.4 522 83.1
Ca_15614_v3 Cicer arietinum L. HOM05D004668 ORTHO05D006460 5.5e-255 884.0 516 83.5
CSS0016357 Camellia sinensis var. sinensis HOM05D004668 ORTHO05D006460 7.1e-255 883.6 520 82.3
Gohir.A05G047900 Gossypium hirsutum HOM05D004668 ORTHO05D006460 9.3e-255 883.2 522 82.4
Gohir.D05G049800 Gossypium hirsutum HOM05D004668 ORTHO05D006460 1.6e-254 882.5 522 82.6
TWI63G0192 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 4.6e-254 880.9 518 82.8
Duzib150G0487 Durio zibethinus HOM05D004668 ORTHO05D006460 6.0e-254 880.6 522 82.4
FAN15G0799 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.8e-253 879.0 503 84.5
FAN20G1164 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.8e-253 879.0 503 84.9
Lalb_Chr11g0064411 Lupinus albus HOM05D004668 ORTHO05D006460 2.3e-253 878.6 521 81.4
Potri.018G038500 Populus trichocarpa HOM05D004668 ORTHO05D006460 2.3e-253 878.6 521 81.2
TAR383G0581 Trochodendron aralioides HOM05D004668 ORTHO05D006460 2.3e-253 878.6 527 80.6
TWI23G1109 Tripterygium wilfordii HOM05D004668 ORTHO05D006460 3.0e-253 878.2 521 82.1
MSTRG.1654 Avicennia marina HOM05D004668 ORTHO05D006460 3.9e-253 877.9 500 83.8
COL.COLO4_18686 Corchorus olitorius HOM05D004668 ORTHO05D006460 5.1e-253 877.5 522 82.0
Medtr3g110068 Medicago truncatula HOM05D004668 ORTHO05D006460 5.1e-253 877.5 509 83.1
TAR626G0558 Trochodendron aralioides HOM05D004668 ORTHO05D006460 6.7e-253 877.1 504 83.3
Nn3g18078 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.5e-252 875.9 527 79.9
AUR62009316 Chenopodium quinoa HOM05D004668 ORTHO05D006460 1.9e-252 875.5 501 83.4
SalBow8G2719 Salvia bowleyana HOM05D004668 ORTHO05D006460 2.5e-252 875.2 505 82.8
Psat5g022480 Pisum sativum HOM05D004668 ORTHO05D006460 1.3e-251 872.8 500 83.4
RcHm_v2.0_Chr6g0305871 Rosa chinensis HOM05D004668 ORTHO05D006460 1.6e-251 872.5 494 86.0
Hund03417 Selenicereus undatus HOM05D004668 ORTHO05D006460 2.1e-251 872.1 527 80.3
CsaV3_3G048680 Cucumis sativus L. HOM05D004668 ORTHO05D006460 2.8e-251 871.7 507 83.8
MELO3C003453.2 Cucumis melo HOM05D004668 ORTHO05D006460 3.7e-251 871.3 507 83.6
Peaxi162Scf00523g00013 Petunia axillaris HOM05D004668 ORTHO05D006460 3.7e-251 871.3 555 77.7
Haze_21865 Corylus avellana HOM05D004668 ORTHO05D006460 6.2e-251 870.5 539 79.2
Actinidia13314 Actinidia chinensis HOM05D004668 ORTHO05D006460 8.2e-251 870.2 518 81.3
TPR.G1330 Trifolium pratense HOM05D004668 ORTHO05D006460 8.2e-251 870.2 516 81.8
Lsat_1_v5_gn_5_33301 Lactuca sativa HOM05D004668 ORTHO05D006460 1.8e-250 869.0 514 82.7
ClCG11G015260 Citrullus lanatus HOM05D004668 ORTHO05D006460 2.4e-250 868.6 507 83.4
Lalb_Chr08g0243231 Lupinus albus HOM05D004668 ORTHO05D006460 2.4e-250 868.6 499 83.0
Sed0009143 Sechium edule HOM05D004668 ORTHO05D006460 4.0e-250 867.8 507 82.4
FvH4_2g36000 Fragaria vesca HOM05D004668 ORTHO05D006460 9.0e-250 866.7 492 85.4
FAN27G2976 Fragaria x ananassa HOM05D004668 ORTHO05D006460 1.2e-249 866.3 494 85.0
Nn2g11692 Nelumbo nucifera HOM05D004668 ORTHO05D006460 1.2e-249 866.3 526 78.9
Sed0007190 Sechium edule HOM05D004668 ORTHO05D006460 2.0e-249 865.5 507 82.4
MBI01_g15706_MAGBIO Magnolia biondii HOM05D004668 ORTHO05D006460 3.4e-249 864.8 525 79.4
EL10Ac2g04059 Beta vulgaris HOM05D004668 ORTHO05D006460 1.7e-248 862.4 498 82.5
PSO782G3981 Papaver somniferum HOM05D004668 ORTHO05D006460 2.2e-248 862.1 523 79.9
Sc24g0002000 Simmondsia chinensis HOM05D004668 ORTHO05D006460 2.2e-248 862.1 504 81.3
AUR62029669 Chenopodium quinoa HOM05D004668 ORTHO05D006460 2.9e-248 861.7 525 79.6
HanXRQChr08g0236271 Helianthus annuus HOM05D004668 ORTHO05D006460 4.9e-248 860.9 511 82.2
ECA246G0301 Erigeron canadensis HOM05D004668 ORTHO05D006460 1.9e-247 859.0 520 80.8
PSO566G0146 Papaver somniferum HOM05D004668 ORTHO05D006460 5.5e-247 857.4 523 79.2
Aqoxy7G01598 Aquilegia oxysepala HOM05D004668 ORTHO05D006460 1.0e-245 853.2 533 78.6
Lalb_Chr23g0269511 Lupinus albus HOM05D004668 ORTHO05D006460 1.8e-245 852.4 513 79.5
Sabra18G0038900 Salix brachista HOM05D004668 ORTHO05D006460 3.0e-245 851.7 530 78.5
SGA_v2.0_scaffold169G38650 Striga asiatica HOM05D004668 ORTHO05D006460 1.6e-243 845.9 518 79.5
CDE04G3150 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 8.5e-240 833.6 503 77.5
ATR0315G076 Amborella trichopoda HOM05D004668 ORTHO05D006460 1.2e-238 829.7 510 76.5
CDE02G2035 Ceratophyllum demersum HOM05D004668 ORTHO05D006460 1.2e-238 829.7 512 77.3
HPP92_023911 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.7e-232 809.3 529 72.6
SGA_v2.0_scaffold163G38083 Striga asiatica HOM05D004668 ORTHO05D006460 3.2e-231 805.1 502 77.9
unitig_748.g7800 Utricularia gibba HOM05D004668 ORTHO05D006460 2.3e-229 798.9 500 77.6
SHI18650 Sapria himalayana HOM05D004668 ORTHO05D006460 8.2e-227 790.4 565 70.1
HPP92_023943 Vanilla planifolia HOM05D004668 ORTHO05D006460 1.2e-225 786.6 529 71.1
Sp2g21880 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.9e-223 779.2 525 77.3
CARHR289290 Cardamine hirsuta HOM05D004668 ORTHO05D006460 1.2e-222 776.5 413 93.0
Zm00001eb119330 Zea mays HOM05D004668 ORTHO05D006460 2.0e-220 769.2 507 72.0
Sp2g21870 Schrenkiella parvula HOM05D004668 ORTHO05D006460 1.7e-219 766.1 526 76.0
Mapoly0007s0280 Marchantia polymorpha HOM05D004668 ORTHO05D006460 3.7e-219 765.0 503 70.8
Zm00001eb339230 Zea mays HOM05D004668 ORTHO05D006460 1.1e-218 763.5 508 71.9
Os05g0227700 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 1.2e-217 760.0 502 72.1
Pp3c21_22430 Physcomitrium patens HOM05D004668 ORTHO05D006460 3.5e-217 758.4 503 69.8
Pp3s48_70 Physcomitrium patens HOM05D004668 ORTHO05D006460 2.2e-216 755.7 503 69.6
Os01g0229100 Oryza sativa ssp. japonica HOM05D004668 ORTHO05D006460 2.9e-216 755.4 507 69.8
Actinidia31228 Actinidia chinensis HOM05D004668 ORTHO05D006460 2.0e-212 742.7 474 78.3
Mapoly0008s0020 Marchantia polymorpha HOM05D004668 ORTHO05D006460 7.5e-212 740.7 506 67.8
SEGI_23309 Sequoiadendron giganteum HOM05D004668 ORTHO05D006460 4.2e-207 724.9 504 68.7
Sabra06G0188700 Salix brachista HOM05D004668 ORTHO05D006460 4.2e-199 698.4 398 86.2
CBR_g38842 Chara braunii HOM05D004668 ORTHO05D006460 5.2e-197 691.4 493 65.3
AUR62043617 Chenopodium quinoa HOM05D004668 ORTHO05D006460 3.3e-191 672.2 501 69.5
AagrBONN_evm.TU.Sc2ySwM_344.1641 Anthoceros agrestis HOM05D004668 ORTHO05D006460 3.3e-183 645.6 504 62.5
SMO118G0091 Selaginella moellendorffii HOM05D004668 ORTHO05D006460 3.3e-183 645.6 524 58.4
GSVIVG01035660001 Vitis vinifera HOM05D004668 ORTHO05D006460 1.8e-181 639.8 380 82.1
Cpa.g.sc78.74 Carica papaya HOM05D004668 ORTHO05D006460 3.2e-170 602.4 347 85.9
Duzib187G0091 Durio zibethinus HOM05D004668 ORTHO05D006460 4.1e-170 602.1 420 73.8
Hma1.2p1_0140F.1_g063460 Hydrangea macrophylla HOM05D004668 ORTHO05D006460 2.9e-163 579.3 345 82.0
BcaC03g17894 Brassica carinata HOM05D004668 ORTHO05D006460 2.1e-161 573.2 355 82.8
PRCOL_00004532 Prasinoderma coloniale HOM05D004668 ORTHO05D006460 6.2e-150 535.0 492 51.4
Oeu012190.1 Olea europaea HOM05D004668 ORTHO05D006460 1.4e-149 533.9 501 56.1
AL6G38760 Arabidopsis lyrata HOM05D004668 ORTHO05D006460 2.4e-149 533.1 356 79.2
CAN.G21.33 Capsicum annuum HOM05D004668 ORTHO05D006460 9.9e-140 501.1 287 82.2
vmacro05363 Vaccinium macrocarpon HOM05D004668 ORTHO05D006460 6.0e-137 491.9 290 80.0
MCO02G037 Micromonas commoda HOM05D004668 ORTHO05D006460 1.1e-133 481.1 510 50.0
Dinv14234 Davidia involucrata HOM05D004668 ORTHO05D006460 7.1e-130 468.4 276 83.7
Cre17.g697450 Chlamydomonas reinhardtii HOM05D004668 ORTHO05D006460 4.3e-127 459.1 502 48.0
C02p59370 Brassica napus HOM05D004668 ORTHO05D006460 7.7e-124 448.4 285 81.4
Dinv14235 Davidia involucrata HOM05D004668 ORTHO05D024316 3.8e-91 339.7 190 82.6
Cfa026236 Carpinus fangiana HOM05D004668 ORTHO05D123177 2.3e-83 313.9 412 41.3
HanXRQChr06g0165701 Helianthus annuus HOM05D004668 ORTHO05D220881 2.8e-57 227.3 318 43.4
HanXRQChr06g0165631 Helianthus annuus HOM05D004668 ORTHO05D220789 1.4e-56 224.9 348 41.4
CARHR187670 Cardamine hirsuta HOM05D004668 ORTHO05D024316 1.6e-49 201.4 120 81.7
BolC2t12000H Brassica oleracea HOM05D004668 ORTHO05D006460 6.9e-40 169.5 94 89.4
CARHR187660 Cardamine hirsuta HOM05D004668 ORTHO05D024316 7.6e-31 139.4 93 74.2
Nitab4.5_0000052g0210 Nicotiana tabacum HOM05D004668 ORTHO05D044669 4.9e-30 136.7 79 78.5
Cc08_g09150 Coffea canephora HOM05D004668 ORTHO05D044669 1.0e-22 112.5 68 73.5
BcaC03g17896 Brassica carinata HOM05D004668 ORTHO05D024316 2.7e-20 104.4 76 65.8
SGA_v2.0_scaffold47G17509 Striga asiatica HOM05D004668 ORTHO05D405290 7.6e-15 86.3 72 62.5
Medtr3g109300 Medicago truncatula HOM05D000944 ORTHO05D003581 4.2e-13 80.5 103 48.5
RcHm_v2.0_Chr3g0458091 Rosa chinensis HOM05D001034 ORTHO05D000955 5.7e-10 70.1 48 62.5
RcHm_v2.0_Chr6g0279321 Rosa chinensis HOM05D004668 ORTHO05D000955 3.4e-07 60.8 35 74.3


User provided reference genes

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