Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G24314 Arabidopsis thaliana HOM05D007331 ORTHO05D009273 1.8e-87 325.9 162 100.0
AL6G35810 Arabidopsis lyrata HOM05D007331 ORTHO05D009273 1.5e-86 322.8 162 98.8
Carub.0006s2210 Capsella rubella HOM05D007331 ORTHO05D009273 8.1e-80 300.4 161 94.4
CARHR189150 Cardamine hirsuta HOM05D007331 ORTHO05D009273 1.1e-79 300.1 162 91.4
Sp2g23030 Schrenkiella parvula HOM05D007331 ORTHO05D009273 1.3e-72 276.6 164 86.0
A06p35140 Brassica napus HOM05D007331 ORTHO05D009273 4.8e-72 274.6 164 86.6
C07p43430 Brassica napus HOM05D007331 ORTHO05D009273 1.1e-71 273.5 159 87.4
BolC7t44869H Brassica oleracea HOM05D007331 ORTHO05D009273 1.1e-71 273.5 159 87.4
BcaNung01223 Brassica carinata HOM05D007331 ORTHO05D009273 7.6e-70 267.3 149 88.6
BraA06t26434Z Brassica rapa HOM05D007331 ORTHO05D009273 1.3e-69 266.5 174 81.6
Thhalv10005048m.g Eutrema salsugineum HOM05D007331 ORTHO05D009273 1.3e-69 266.5 166 83.7
THA.LOC104798905 Tarenaya hassleriana HOM05D007331 ORTHO05D009273 1.4e-68 263.1 165 79.4
Cfa016463 Carpinus fangiana HOM05D007331 ORTHO05D009273 7.6e-54 214.2 150 70.0
GSVIVG01010322001 Vitis vinifera HOM05D007331 ORTHO05D009273 1.7e-53 213.0 159 67.3
FvH4_7g32020 Fragaria vesca HOM05D007331 ORTHO05D009273 3.5e-51 205.3 160 62.5
QL09p007955 Quercus lobata HOM05D007331 ORTHO05D009273 3.5e-51 205.3 158 65.8
RcHm_v2.0_Chr1g0381631 Rosa chinensis HOM05D007331 ORTHO05D009273 6.1e-51 204.5 163 63.2
FAN01G2673 Fragaria x ananassa HOM05D007331 ORTHO05D009273 1.8e-50 203.0 160 61.9
CiPaw.05G198500 Carya illinoinensis HOM05D007331 ORTHO05D009273 6.7e-50 201.1 165 61.8
Haze_00231 Corylus avellana HOM05D007331 ORTHO05D009273 8.7e-50 200.7 186 58.1
CANSAT21G1988 Cannabis sativa HOM05D007331 ORTHO05D009273 2.5e-49 199.1 167 59.9
MD01G1223100 Malus domestica HOM05D007331 ORTHO05D009273 2.5e-49 199.1 159 62.9
Atru.chr12.2246 Acer truncatum HOM05D007331 ORTHO05D009273 3.3e-49 198.7 138 68.8
COL.COLO4_16795 Corchorus olitorius HOM05D007331 ORTHO05D009273 4.3e-49 198.4 145 66.2
Manes.05G191300 Manihot esculenta HOM05D007331 ORTHO05D009273 1.3e-48 196.8 133 71.4
Eucgr.K00396 Eucalyptus grandis HOM05D007331 ORTHO05D009273 2.8e-48 195.7 122 75.4
Gohir.A12G248800 Gossypium hirsutum HOM05D007331 ORTHO05D009273 2.8e-48 195.7 134 70.9
Gorai.008G267700 Gossypium raimondii HOM05D007331 ORTHO05D009273 4.8e-48 194.9 160 61.9
Prupe.2G313600 Prunus persica HOM05D007331 ORTHO05D009273 4.8e-48 194.9 134 69.4
Aa31LG11G3570 Aethionema arabicum HOM05D007331 ORTHO05D009273 1.4e-47 193.4 107 86.9
Dinv35349 Davidia involucrata HOM05D007331 ORTHO05D009273 1.4e-47 193.4 148 68.9
Ciclev10022582m.g Citrus clementina HOM05D007331 ORTHO05D009273 1.8e-47 193.0 156 62.2
Glyma.06G130800 Glycine max HOM05D007331 ORTHO05D009273 2.4e-47 192.6 153 61.4
Phvul.009G050900 Phaseolus vulgaris HOM05D007331 ORTHO05D009273 2.4e-47 192.6 162 61.7
ClCG05G009050 Citrullus lanatus HOM05D007331 ORTHO05D009273 3.1e-47 192.2 125 74.4
MELO3C019371.2 Cucumis melo HOM05D000442 ORTHO05D007032 9.0e-47 190.7 141 67.4
PGR142G4299 Punica granatum HOM05D007331 ORTHO05D009273 1.5e-46 189.9 160 63.1
CsaV3_3G019730 Cucumis sativus L. HOM05D007331 ORTHO05D009273 2.0e-46 189.5 141 66.7
Ca_16722_v3 Cicer arietinum L. HOM05D007331 ORTHO05D009273 2.6e-46 189.1 159 58.5
Sed0023714 Sechium edule HOM05D007331 ORTHO05D009273 2.6e-46 189.1 154 65.6
Duzib068G0233 Durio zibethinus HOM05D007331 ORTHO05D009273 3.4e-46 188.7 162 60.5
Glyma.04G234000 Glycine max HOM05D007331 ORTHO05D009273 1.0e-45 187.2 153 60.1
PSO063G7177 Papaver somniferum HOM05D007331 ORTHO05D009273 1.3e-45 186.8 154 65.6
Medtr3g491820 Medicago truncatula HOM05D007331 ORTHO05D009273 1.7e-45 186.4 156 59.0
PSO170G4979 Papaver somniferum HOM05D007331 ORTHO05D009273 1.7e-45 186.4 161 64.0
Cpa.g.sc3.102 Carica papaya HOM05D007331 ORTHO05D009273 3.8e-45 185.3 116 76.7
CDE04G0075 Ceratophyllum demersum HOM05D007331 ORTHO05D009273 5.0e-45 184.9 148 60.1
Potri.015G010700 Populus trichocarpa HOM05D007331 ORTHO05D009273 8.5e-45 184.1 135 65.9
Aqoxy5G04308 Aquilegia oxysepala HOM05D007331 ORTHO05D009273 1.1e-44 183.7 164 61.0
Sabra15G0008800 Salix brachista HOM05D007331 ORTHO05D009273 1.1e-44 183.7 135 67.4
DCAR_014548 Daucus carota HOM05D007331 ORTHO05D009273 2.5e-44 182.6 159 61.0
Psat5g075920 Pisum sativum HOM05D007331 ORTHO05D009273 7.2e-44 181.0 128 64.8
MSTRG.8644 Avicennia marina HOM05D007331 ORTHO05D009273 7.9e-43 177.6 115 73.0
Migut.F00197 Erythranthe guttata HOM05D007331 ORTHO05D009273 7.9e-43 177.6 164 57.3
Lalb_Chr08g0240101 Lupinus albus HOM05D007331 ORTHO05D009273 2.3e-42 176.0 154 56.5
TPR.G33621 Trifolium pratense HOM05D007331 ORTHO05D009273 2.3e-42 176.0 163 55.8
Thecc.03G201300 Theobroma cacao HOM05D007331 ORTHO05D009273 3.0e-42 175.6 159 58.5
SGA_v2.0_scaffold192G40527 Striga asiatica HOM05D007331 ORTHO05D009273 6.7e-42 174.5 150 61.3
Cc02_g01360 Coffea canephora HOM05D007331 ORTHO05D009273 1.5e-41 173.3 166 58.4
Nitab4.5_0005491g0010 Nicotiana tabacum HOM05D007331 ORTHO05D009273 4.3e-41 171.8 145 61.4
Sopen03g022780 Solanum pennellii HOM05D007331 ORTHO05D009273 1.3e-40 170.2 136 61.8
CAN.G481.32 Capsicum annuum HOM05D007331 ORTHO05D009273 2.8e-40 169.1 136 61.8
TWI39G0006 Tripterygium wilfordii HOM05D007331 ORTHO05D009273 2.8e-40 169.1 115 70.4
Lj1g0000536 Lotus japonicus HOM05D007331 ORTHO05D009273 6.3e-40 167.9 164 53.7
PGSC0003DMG400018546 Solanum tuberosum HOM05D007331 ORTHO05D009273 6.3e-40 167.9 157 55.4
HPP92_020186 Vanilla planifolia HOM05D007331 ORTHO05D009273 6.3e-40 167.9 141 59.6
Solyc03g082970.4 Solanum lycopersicum HOM05D007331 ORTHO05D009273 8.2e-40 167.5 115 69.6
Nn5g27567 Nelumbo nucifera HOM05D007331 ORTHO05D009273 3.1e-39 165.6 112 72.3
ATR0730G104 Amborella trichopoda HOM05D007331 ORTHO05D009273 9.1e-39 164.1 122 63.9
AUR62006072 Chenopodium quinoa HOM05D007331 ORTHO05D009273 1.5e-38 163.3 139 59.0
arahy.Tifrunner.gnm1.ann1.E13FL8 Arachis hypogaea HOM05D007331 ORTHO05D009273 2.0e-38 162.9 155 52.3
FAN06G3260 Fragaria x ananassa HOM05D007331 ORTHO05D009273 3.4e-38 162.2 107 72.0
CSS0016118 Camellia sinensis var. sinensis HOM05D007331 ORTHO05D009273 1.0e-37 160.6 107 73.8
VMungo1309G2222 Vigna mungo HOM05D007331 ORTHO05D009273 6.5e-37 157.9 111 68.5
Actinidia34232 Actinidia chinensis HOM05D007331 ORTHO05D009273 1.9e-36 156.4 100 76.0
arahy.Tifrunner.gnm1.ann1.US9W38 Arachis hypogaea HOM05D007331 ORTHO05D009273 3.2e-36 155.6 174 47.7
FAN10G2274 Fragaria x ananassa HOM05D007331 ORTHO05D009273 4.2e-36 155.2 102 70.6
FAN10G3896 Fragaria x ananassa HOM05D007331 ORTHO05D009273 4.2e-36 155.2 102 70.6
Peaxi162Scf00740g00023 Petunia axillaris HOM05D007331 ORTHO05D009273 7.2e-36 154.5 106 69.8
unitig_92.g28248 Utricularia gibba HOM05D007331 ORTHO05D009273 7.2e-36 154.5 156 54.5
COL.COLO4_06879 Corchorus olitorius HOM05D007331 ORTHO05D009273 6.1e-35 151.4 104 70.2
HanXRQChr07g0206431 Helianthus annuus HOM05D007331 ORTHO05D009273 7.9e-35 151.0 115 63.5
Zm00001eb361120 Zea mays HOM05D007331 ORTHO05D009273 1.8e-34 149.8 125 58.4
Zm00001eb155420 Zea mays HOM05D007331 ORTHO05D009273 3.0e-34 149.1 122 59.0
Os01g0705300 Oryza sativa ssp. japonica HOM05D007331 ORTHO05D009273 5.1e-34 148.3 125 59.2
ECA238G3436 Erigeron canadensis HOM05D007331 ORTHO05D009273 2.6e-33 146.0 132 55.3
Lsat_1_v5_gn_2_136240 Lactuca sativa HOM05D007331 ORTHO05D009273 4.4e-33 145.2 109 63.3
AUR62035555 Chenopodium quinoa HOM05D007331 ORTHO05D009273 5.7e-33 144.8 110 63.6
Ah.07g205440 Amaranthus hybridus HOM05D007331 ORTHO05D009273 1.7e-32 143.3 112 62.5
Nitab4.5_0000548g0030 Nicotiana tabacum HOM05D007331 ORTHO05D008325 2.4e-31 139.4 96 70.8
Hund11645 Selenicereus undatus HOM05D007331 ORTHO05D009273 5.3e-31 138.3 114 60.5
EL10Ac3g05257 Beta vulgaris HOM05D007331 ORTHO05D009273 7.0e-31 137.9 156 50.0
Oeu023663.2 Olea europaea HOM05D007331 ORTHO05D009273 2.0e-30 136.3 149 52.3
Rhsim03G0210700 Rhododendron simsii HOM05D007331 ORTHO05D009273 2.6e-30 136.0 153 48.4
Lj3P902T29 Lonicera japonica HOM05D007331 ORTHO05D009273 6.7e-26 121.3 83 67.5
MBI06_g33738_MAGBIO Magnolia biondii HOM05D007331 ORTHO05D009273 8.8e-26 120.9 98 63.3
vmacro06396 Vaccinium macrocarpon HOM05D007331 ORTHO05D009273 1.1e-23 114.0 93 57.0
Thecc.05G118900 Theobroma cacao HOM05D007331 ORTHO05D009273 9.8e-17 90.9 79 57.0
A02p40720 Brassica napus HOM05D007331 ORTHO05D009273 1.1e-12 77.4 42 83.3
BraA02t09018Z Brassica rapa HOM05D007331 ORTHO05D009273 1.1e-12 77.4 42 83.3
Actinidia08666 Actinidia chinensis HOM05D007331 ORTHO05D009273 6.1e-11 71.6 72 59.7
arahy.Tifrunner.gnm1.ann1.2NJ5KY Arachis hypogaea HOM05D007331 ORTHO05D009273 5.7e-09 65.1 69 50.7
AagrBONN_evm.TU.Sc2ySwM_368.2672 Anthoceros agrestis HOM05D007331 ORTHO05D009273 1.8e-07 60.1 90 34.4
Mapoly0073s0014 Marchantia polymorpha HOM05D007331 ORTHO05D009273 2.4e-07 59.7 140 28.6


User provided reference genes

Program Settings