Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G23710 Arabidopsis thaliana HOM05D003762 ORTHO05D004374 4.2e-130 468.0 231 100.0
AL6G34980 Arabidopsis lyrata HOM05D003762 ORTHO05D004374 3.7e-110 401.7 231 83.5
Carub.0006s2146 Capsella rubella HOM05D003762 ORTHO05D004374 9.4e-106 387.1 231 81.0
CARHR189840 Cardamine hirsuta HOM05D003762 ORTHO05D004374 2.6e-95 352.4 232 72.0
Sp2g23520 Schrenkiella parvula HOM05D003762 ORTHO05D004374 7.7e-92 340.9 235 70.2
Thhalv10005351m.g Eutrema salsugineum HOM05D003762 ORTHO05D004374 5.0e-91 338.2 236 70.3
A06p34610 Brassica napus HOM05D003762 ORTHO05D004374 7.5e-87 324.3 235 66.4
BraA06t26389Z Brassica rapa HOM05D003762 ORTHO05D004374 7.5e-87 324.3 235 66.4
BcaNung01845 Brassica carinata HOM05D003762 ORTHO05D004374 4.8e-86 321.6 235 65.5
C07p43880 Brassica napus HOM05D003762 ORTHO05D004374 4.8e-86 321.6 235 65.5
BolC7t44916H Brassica oleracea HOM05D003762 ORTHO05D004374 4.8e-86 321.6 235 65.5
BolC9t53671H Brassica oleracea HOM05D003762 ORTHO05D004374 1.2e-73 280.4 236 62.3
BcaC04g23509 Brassica carinata HOM05D003762 ORTHO05D004374 3.0e-72 275.8 233 61.4
BcaB04g19852 Brassica carinata HOM05D003762 ORTHO05D004374 5.8e-71 271.6 236 59.7
BcaB04g19853 Brassica carinata HOM05D003762 ORTHO05D004374 5.8e-71 271.6 236 59.7
Aa31sc38G110 Aethionema arabicum HOM05D003762 ORTHO05D004374 5.4e-69 265.0 234 60.3
C09p07550 Brassica napus HOM05D003762 ORTHO05D004374 2.0e-68 263.1 232 60.3
THA.LOC104798921 Tarenaya hassleriana HOM05D003762 ORTHO05D004374 4.6e-68 261.9 233 57.9
BraA09t36329Z Brassica rapa HOM05D003762 ORTHO05D004374 2.1e-65 253.1 232 57.3
Aa31LG11G3050 Aethionema arabicum HOM05D003762 ORTHO05D004374 8.0e-65 251.1 234 56.4
A09p06830 Brassica napus HOM05D003762 ORTHO05D004374 4.0e-64 248.8 232 56.9
CiPaw.09G152500 Carya illinoinensis HOM05D003762 ORTHO05D004374 1.5e-58 230.3 233 51.5
Cpa.g.sc37.21 Carica papaya HOM05D003762 ORTHO05D004374 3.3e-58 229.2 234 50.9
Potri.018G000800 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.6e-58 228.4 233 52.4
Potri.001G003700 Populus trichocarpa HOM05D003762 ORTHO05D004374 1.2e-57 227.3 233 52.4
Sabra01G0002500 Salix brachista HOM05D003762 ORTHO05D004374 4.7e-57 225.3 233 52.4
Ciclev10026399m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.2e-55 220.7 237 48.9
Manes.04G114300 Manihot esculenta HOM05D003762 ORTHO05D004374 1.2e-55 220.7 233 49.4
QL01p011549 Quercus lobata HOM05D003762 ORTHO05D004374 1.2e-55 220.7 232 49.6
Cfa001979 Carpinus fangiana HOM05D003762 ORTHO05D004374 2.0e-55 219.9 233 49.4
Duzib160G0900 Durio zibethinus HOM05D003762 ORTHO05D004374 3.7e-54 215.7 233 48.1
Thecc.06G021200 Theobroma cacao HOM05D003762 ORTHO05D004374 1.1e-53 214.2 233 48.1
TWI56G0980 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 1.4e-53 213.8 233 47.2
Potri.003G033600 Populus trichocarpa HOM05D003762 ORTHO05D004374 3.2e-53 212.6 232 47.0
Nn1g05222 Nelumbo nucifera HOM05D003762 ORTHO05D004374 7.1e-53 211.5 233 48.1
GSVIVG01004444001 Vitis vinifera HOM05D003762 ORTHO05D004374 1.6e-52 210.3 234 49.1
TWI36G0443 Tripterygium wilfordii HOM05D003762 ORTHO05D004374 2.7e-52 209.5 233 47.2
Prupe.5G067300 Prunus persica HOM05D003762 ORTHO05D004374 4.6e-52 208.8 233 48.1
Aqoxy6G02090 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 7.8e-52 208.0 234 47.9
Prupe.1G576300 Prunus persica HOM05D003762 ORTHO05D004374 2.3e-51 206.5 233 48.1
ClCG02G018290 Citrullus lanatus HOM05D003762 ORTHO05D004374 6.6e-51 204.9 233 46.4
ClCG00G001180 Citrullus lanatus HOM05D003762 ORTHO05D004374 8.6e-51 204.5 237 47.3
ClCG10G003800 Citrullus lanatus HOM05D003762 ORTHO05D004374 8.6e-51 204.5 237 47.3
CsaV3_3G003760 Cucumis sativus L. HOM05D003762 ORTHO05D004374 8.6e-51 204.5 236 47.0
MELO3C014058.2 Cucumis melo HOM05D003762 ORTHO05D004374 1.1e-50 204.1 236 47.0
COL.COLO4_12944 Corchorus olitorius HOM05D003762 ORTHO05D004374 1.5e-50 203.8 239 44.8
Phvul.008G021700 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 1.5e-50 203.8 233 46.4
VMungo1383G0008 Vigna mungo HOM05D003762 ORTHO05D004374 1.5e-50 203.8 233 46.8
Dinv08128 Davidia involucrata HOM05D003762 ORTHO05D004374 2.5e-50 203.0 233 46.4
Gohir.A02G058000 Gossypium hirsutum HOM05D003762 ORTHO05D004374 3.3e-50 202.6 234 45.3
Gorai.005G071700 Gossypium raimondii HOM05D003762 ORTHO05D004374 3.3e-50 202.6 234 44.9
Atru.chr1.3040 Acer truncatum HOM05D003762 ORTHO05D004374 5.6e-50 201.8 233 45.9
Peaxi162Scf00053g00522 Petunia axillaris HOM05D003762 ORTHO05D004374 7.3e-50 201.4 229 45.4
Glyma.18G279200 Glycine max HOM05D003762 ORTHO05D004374 1.2e-49 200.7 233 46.4
Gohir.D02G063800 Gossypium hirsutum HOM05D003762 ORTHO05D004374 2.1e-49 199.9 234 44.4
Sed0021000 Sechium edule HOM05D003762 ORTHO05D004374 2.1e-49 199.9 233 45.1
Hma1.2p1_0515F.1_g170140 Hydrangea macrophylla HOM05D003762 ORTHO05D004374 6.2e-49 198.4 232 47.0
FAN09G0714 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-48 197.6 233 46.4
CSS0030442 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 1.4e-48 197.2 235 46.8
CAN.G812.32 Capsicum annuum HOM05D003762 ORTHO05D004374 1.8e-48 196.8 231 44.2
Lalb_Chr17g0343451 Lupinus albus HOM05D003762 ORTHO05D004374 1.8e-48 196.8 234 43.6
Cc08_g05300 Coffea canephora HOM05D003762 ORTHO05D004374 2.4e-48 196.4 234 44.4
CSS0038493 Camellia sinensis var. sinensis HOM05D003762 ORTHO05D004374 5.2e-48 195.3 235 46.4
FAN05G3809 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.2e-48 195.3 233 45.5
FAN14G5252 Fragaria x ananassa HOM05D003762 ORTHO05D004374 5.2e-48 195.3 233 45.5
arahy.Tifrunner.gnm1.ann1.VKA3KK Arachis hypogaea HOM05D003762 ORTHO05D004374 6.8e-48 194.9 215 45.1
arahy.Tifrunner.gnm1.ann1.IN3X4V Arachis hypogaea HOM05D003762 ORTHO05D004374 8.9e-48 194.5 215 45.1
MD15G1431400 Malus domestica HOM05D003762 ORTHO05D004374 1.2e-47 194.1 196 48.5
DCAR_002196 Daucus carota HOM05D003762 ORTHO05D004374 2.0e-47 193.4 233 46.4
Nitab4.5_0000255g0050 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.0e-47 193.4 230 44.3
PGR044G0538 Punica granatum HOM05D003762 ORTHO05D004374 2.0e-47 193.4 238 45.4
FvH4_6g29950 Fragaria vesca HOM05D003762 ORTHO05D004374 2.6e-47 193.0 233 45.1
FAN02G0052 Fragaria x ananassa HOM05D003762 ORTHO05D004374 2.6e-47 193.0 233 45.1
Nitab4.5_0000898g0100 Nicotiana tabacum HOM05D003762 ORTHO05D004374 2.6e-47 193.0 230 44.8
Sed0000714 Sechium edule HOM05D003762 ORTHO05D004374 2.6e-47 193.0 215 46.5
Actinidia15994 Actinidia chinensis HOM05D003762 ORTHO05D004374 3.4e-47 192.6 233 45.5
ECA246G1447 Erigeron canadensis HOM05D000759 ORTHO05D000574 3.4e-47 192.6 235 43.4
Eucgr.F01771 Eucalyptus grandis HOM05D003762 ORTHO05D004374 3.4e-47 192.6 235 44.3
ECA240G1229 Erigeron canadensis HOM05D003762 ORTHO05D004374 4.4e-47 192.2 236 44.5
GSVIVG01017309001 Vitis vinifera HOM05D003762 ORTHO05D004374 4.4e-47 192.2 227 47.1
vmacro11452 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 5.8e-47 191.8 234 45.3
MSTRG.11877 Avicennia marina HOM05D003762 ORTHO05D004374 9.9e-47 191.0 231 44.6
SGA_v2.0_scaffold120G32921 Striga asiatica HOM05D003762 ORTHO05D004374 9.9e-47 191.0 231 45.0
Rhsim05G0080000 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.3e-46 190.7 234 42.7
Migut.J01128 Erythranthe guttata HOM05D003762 ORTHO05D004374 4.9e-46 188.7 232 42.7
arahy.Tifrunner.gnm1.ann1.1PQR27 Arachis hypogaea HOM05D003762 ORTHO05D004374 1.1e-45 187.6 236 43.6
Aqoxy6G01949 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 3.2e-45 186.0 233 43.3
Phvul.010G127200 Phaseolus vulgaris HOM05D003762 ORTHO05D004374 4.2e-45 185.7 234 44.0
CANSAT35G0296 Cannabis sativa HOM05D003762 ORTHO05D004374 5.4e-45 185.3 233 45.1
SGA_v2.0_scaffold146G36137 Striga asiatica HOM05D003762 ORTHO05D004374 5.4e-45 185.3 230 44.3
arahy.Tifrunner.gnm1.ann1.RFRX47 Arachis hypogaea HOM05D003762 ORTHO05D004374 9.2e-45 184.5 236 42.8
DCAR_030901 Daucus carota HOM05D003762 ORTHO05D004374 9.2e-45 184.5 216 44.4
Lj1g0002607 Lotus japonicus HOM05D003762 ORTHO05D004374 9.2e-45 184.5 235 45.5
arahy.Tifrunner.gnm1.ann1.3GPH34 Arachis hypogaea HOM05D003762 ORTHO05D004374 7.8e-44 181.4 236 41.9
Sopen08g024260 Solanum pennellii HOM05D003762 ORTHO05D004374 7.8e-44 181.4 230 41.7
Ca_06841_v3 Cicer arietinum L. HOM05D003762 ORTHO05D004374 1.3e-43 180.6 234 42.3
Glyma.07G041800 Glycine max HOM05D003762 ORTHO05D004374 2.3e-43 179.9 230 43.5
Oeu056611.1 Olea europaea HOM05D003762 ORTHO05D004374 3.9e-43 179.1 231 41.6
MBI14_g44482_MAGBIO Magnolia biondii HOM05D003762 ORTHO05D004374 6.6e-43 178.3 225 41.3
Glyma.09G089900 Glycine max HOM05D003762 ORTHO05D004374 8.7e-43 177.9 219 44.3
PSO170G1737 Papaver somniferum HOM05D003762 ORTHO05D004374 8.7e-43 177.9 238 44.1
PSO455G0078 Papaver somniferum HOM05D003762 ORTHO05D004374 8.7e-43 177.9 233 44.2
RcHm_v2.0_Chr6g0271261 Rosa chinensis HOM05D003762 ORTHO05D004374 1.5e-42 177.2 234 43.2
Eucgr.J01004 Eucalyptus grandis HOM05D003762 ORTHO05D004374 1.9e-42 176.8 229 42.4
HanXRQChr03g0081311 Helianthus annuus HOM05D003762 ORTHO05D004374 5.6e-42 175.3 233 42.9
HanXRQChr17g0537091 Helianthus annuus HOM05D003762 ORTHO05D004374 5.6e-42 175.3 196 43.4
Rhsim11G0183700 Rhododendron simsii HOM05D003762 ORTHO05D004374 1.2e-41 174.1 226 41.2
RcHm_v2.0_Chr6g0271271 Rosa chinensis HOM05D003762 ORTHO05D004374 1.6e-41 173.7 234 42.7
SalBow2G2359 Salvia bowleyana HOM05D003762 ORTHO05D004374 2.1e-41 173.3 235 40.9
PGSC0003DMG402007612 Solanum tuberosum HOM05D003762 ORTHO05D004374 2.1e-41 173.3 230 40.4
Lsat_1_v5_gn_3_23460 Lactuca sativa HOM05D003762 ORTHO05D004374 3.6e-41 172.6 229 41.9
Lj8P331T26 Lonicera japonica HOM05D003762 ORTHO05D004374 3.6e-41 172.6 193 46.6
Psat4g001640 Pisum sativum HOM05D003762 ORTHO05D004374 3.6e-41 172.6 216 42.1
Hund13161 Selenicereus undatus HOM05D003762 ORTHO05D004374 8.1e-41 171.4 233 44.2
Ciclev10009494m.g Citrus clementina HOM05D003762 ORTHO05D004374 1.4e-40 170.6 233 40.8
RcHm_v2.0_Chr2g0135951 Rosa chinensis HOM05D003762 ORTHO05D004374 1.4e-40 170.6 233 42.5
Sc24g0003260 Simmondsia chinensis HOM05D003762 ORTHO05D004374 2.4e-40 169.9 233 42.1
AUR62024643 Chenopodium quinoa HOM05D003762 ORTHO05D004374 4.0e-40 169.1 234 42.3
TPR.G19896 Trifolium pratense HOM05D003762 ORTHO05D004374 2.6e-39 166.4 215 40.9
Haze_16536 Corylus avellana HOM05D003762 ORTHO05D004374 7.6e-39 164.9 204 45.1
Ah.03g133930 Amaranthus hybridus HOM05D003762 ORTHO05D004374 4.9e-38 162.2 235 43.8
Peaxi162Scf00573g00044 Petunia axillaris HOM05D003762 ORTHO05D004374 1.1e-37 161.0 231 39.4
PGSC0003DMG400003846 Solanum tuberosum HOM05D003762 ORTHO05D004374 1.4e-37 160.6 211 40.3
unitig_0.g2831 Utricularia gibba HOM05D003762 ORTHO05D004374 1.2e-36 157.5 214 37.9
Zm00001eb386260 Zea mays HOM05D003762 ORTHO05D004374 7.8e-36 154.8 213 35.2
Medtr7g109780 Medicago truncatula HOM05D003762 ORTHO05D004374 1.7e-35 153.7 196 40.3
QL03p059502 Quercus lobata HOM05D003762 ORTHO05D004374 2.3e-35 153.3 232 34.5
Zm00001eb276730 Zea mays HOM05D003762 ORTHO05D004374 3.0e-35 152.9 214 33.6
HPP92_015034 Vanilla planifolia HOM05D003762 ORTHO05D004374 3.9e-35 152.5 205 40.5
CAN.G1683.1 Capsicum annuum HOM05D003762 ORTHO05D004374 1.5e-34 150.6 202 42.1
FAN09G1243 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.5e-34 150.6 234 38.0
Atru.chr1.3022 Acer truncatum HOM05D003762 ORTHO05D004374 1.9e-34 150.2 156 47.4
CAN.G2872.1 Capsicum annuum HOM05D003762 ORTHO05D004374 7.3e-34 148.3 202 41.6
ATR0580G255 Amborella trichopoda HOM05D003762 ORTHO05D004374 9.6e-34 147.9 230 39.1
TPR.G20064 Trifolium pratense HOM05D003762 ORTHO05D004374 2.1e-33 146.7 231 38.5
TAR625G0731 Trochodendron aralioides HOM05D003762 ORTHO05D004374 1.8e-32 143.7 189 41.8
TAR636G2311 Trochodendron aralioides HOM05D003762 ORTHO05D004374 3.1e-32 142.9 156 45.5
Medtr0003s0690 Medicago truncatula HOM05D003762 ORTHO05D004374 9.0e-32 141.4 179 41.3
Solyc08g075580.3 Solanum lycopersicum HOM05D003762 ORTHO05D004374 5.8e-31 138.7 153 45.1
VMungo0331G0552 Vigna mungo HOM05D003762 ORTHO05D004374 4.9e-30 135.6 216 38.9
HPP92_015113 Vanilla planifolia HOM05D003762 ORTHO05D004374 8.4e-30 134.8 158 44.3
Oeu056610.1 Olea europaea HOM05D003762 ORTHO05D004374 1.1e-29 134.4 149 45.0
PSO455G0143 Papaver somniferum HOM05D003762 ORTHO05D004374 2.4e-29 133.3 229 39.3
AagrBONN_evm.TU.Sc2ySwM_228.1250 Anthoceros agrestis HOM05D003762 ORTHO05D004374 4.2e-29 132.5 218 34.4
MELO3C007348.2 Cucumis melo HOM05D003762 ORTHO05D004374 5.4e-29 132.1 200 40.5
vmacro16904 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 7.1e-29 131.7 166 39.8
Zm00001eb356740 Zea mays HOM05D003762 ORTHO05D004374 1.2e-28 131.0 194 33.5
Mapoly0090s0008 Marchantia polymorpha HOM05D003762 ORTHO05D004374 3.9e-27 125.9 208 36.5
MD08G1239800 Malus domestica HOM05D003762 ORTHO05D004374 8.1e-25 118.2 116 50.9
Rhsim12G0192200 Rhododendron simsii HOM05D003762 ORTHO05D004374 8.1e-25 118.2 146 43.8
FAN02G2701 Fragaria x ananassa HOM05D003762 ORTHO05D004374 1.1e-24 117.9 211 36.0
VMungo0720G1683 Vigna mungo HOM05D003762 ORTHO05D004374 9.0e-24 114.8 139 43.2
Pp3c22_6800 Physcomitrium patens HOM05D003762 ORTHO05D004374 2.0e-23 113.6 202 30.2
QL06p036898 Quercus lobata HOM05D003762 ORTHO05D004374 3.8e-22 109.4 124 46.8
Lsat_1_v5_gn_3_23440 Lactuca sativa HOM05D003762 ORTHO05D004374 2.5e-21 106.7 180 33.3
MCO15G473 Micromonas commoda HOM05D003762 ORTHO05D004374 4.2e-21 105.9 220 31.4
Cre07.g314950 Chlamydomonas reinhardtii HOM05D003762 ORTHO05D004374 1.0e-19 101.3 217 29.0
HanXRQChr03g0081131 Helianthus annuus HOM05D003762 ORTHO05D004374 1.3e-19 100.9 80 58.8
Oeu039594.1 Olea europaea HOM05D003762 ORTHO05D004374 1.1e-18 97.8 164 36.6
Nitab4.5_0009310g0060 Nicotiana tabacum HOM05D003762 ORTHO05D004374 1.5e-18 97.4 113 43.4
Atru.chr1.3024 Acer truncatum HOM05D003762 ORTHO05D004374 4.3e-18 95.9 113 43.4
FAN05G0849 Fragaria x ananassa HOM05D003762 ORTHO05D004374 7.4e-18 95.1 202 33.2
Aqoxy6G01956 Aquilegia oxysepala HOM05D003762 ORTHO05D004374 6.5e-14 82.0 94 46.8
AUR62011796 Chenopodium quinoa HOM05D003762 ORTHO05D004374 1.1e-13 81.3 120 40.0
FAN14G0588 Fragaria x ananassa HOM05D003762 ORTHO05D004374 4.2e-13 79.3 127 37.0
SEGI_04069 Sequoiadendron giganteum HOM05D003762 ORTHO05D004374 4.2e-13 79.3 80 43.8
Potri.003G221301 Populus trichocarpa HOM05D003762 ORTHO05D004374 5.5e-13 79.0 113 40.7
FvH4_6g41460 Fragaria vesca HOM05D003762 ORTHO05D004374 2.1e-12 77.0 127 36.2
Nn1g05046 Nelumbo nucifera HOM05D002280 ORTHO05D002322 7.9e-12 75.1 70 50.0
Os06g0603400 Oryza sativa ssp. japonica HOM05D003762 ORTHO05D004374 1.5e-10 70.9 56 57.1
QL05p029016 Quercus lobata HOM05D003762 ORTHO05D004374 3.3e-10 69.7 96 40.6
vmacro18986 Vaccinium macrocarpon HOM05D003762 ORTHO05D004374 3.7e-09 66.2 217 26.7
VMungo1383G0391 Vigna mungo HOM05D003762 ORTHO05D004374 1.1e-08 64.7 102 34.3
PRCOL_00004812 Prasinoderma coloniale HOM05D003762 ORTHO05D004374 6.9e-08 62.0 147 27.2
Nitab4.5_0009310g0070 Nicotiana tabacum HOM05D003419 ORTHO05D004374 4.5e-07 59.3 93 40.9
Nitab4.5_0004267g0010 Nicotiana tabacum HOM05D003762 ORTHO05D004374 6.5e-06 55.5 76 40.8


User provided reference genes

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