Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G22110 Arabidopsis thaliana HOM05D006175 ORTHO05D008081 3.3e-308 1060.8 527 100.0
AL6G33090 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 4.4e-300 1033.9 527 97.0
Carub.0006s1975 Capsella rubella HOM05D006175 ORTHO05D008081 2.8e-291 1004.6 527 94.7
Aa31LG1G13320 Aethionema arabicum HOM05D006175 ORTHO05D008081 7.5e-268 926.8 526 87.3
Thhalv10001961m.g Eutrema salsugineum HOM05D006175 ORTHO05D008081 1.2e-265 919.5 521 86.9
SpUn0288_0010 Schrenkiella parvula HOM05D006175 ORTHO05D008081 3.0e-264 914.8 521 86.9
BcaC01g04929 Brassica carinata HOM05D006175 ORTHO05D008081 1.6e-254 882.5 521 84.3
C03p31990 Brassica napus HOM05D006175 ORTHO05D008081 2.1e-254 882.1 521 84.3
A03p26700 Brassica napus HOM05D006175 ORTHO05D008081 1.1e-253 879.8 521 83.9
BolC3t15542H Brassica oleracea HOM05D006175 ORTHO05D008081 1.4e-253 879.4 521 83.9
THA.LOC104810934 Tarenaya hassleriana HOM05D006175 ORTHO05D008081 2.0e-252 875.5 528 81.6
BraA03t11882Z Brassica rapa HOM05D006175 ORTHO05D008081 1.9e-250 869.0 525 83.0
BcaB01g03058 Brassica carinata HOM05D006175 ORTHO05D008081 6.4e-243 844.0 521 81.4
Ciclev10019690m.g Citrus clementina HOM05D006175 ORTHO05D008081 1.2e-228 796.6 529 75.4
Gohir.D05G004300 Gossypium hirsutum HOM05D006175 ORTHO05D008081 3.3e-223 778.5 524 73.7
Gohir.A05G003900 Gossypium hirsutum HOM05D006175 ORTHO05D008081 8.1e-222 773.9 526 72.8
Potri.012G039300 Populus trichocarpa HOM05D006175 ORTHO05D008081 2.6e-220 768.8 539 71.4
Atru.chr3.1303 Acer truncatum HOM05D006175 ORTHO05D008081 4.5e-220 768.1 528 73.1
Duzib168G0906 Durio zibethinus HOM05D006175 ORTHO05D008081 1.3e-219 766.5 555 69.5
Cfa020669 Carpinus fangiana HOM05D006175 ORTHO05D008081 4.9e-219 764.6 527 71.7
Thecc.03G068300 Theobroma cacao HOM05D006175 ORTHO05D008081 1.9e-218 762.7 523 72.7
Eucgr.H00594 Eucalyptus grandis HOM05D006175 ORTHO05D008081 2.5e-218 762.3 525 70.7
TWI60G0630 Tripterygium wilfordii HOM05D006175 ORTHO05D008081 4.6e-217 758.1 520 71.9
CANSAT01G2997 Cannabis sativa HOM05D006175 ORTHO05D008081 3.9e-216 755.0 527 70.2
Phvul.004G144700 Phaseolus vulgaris HOM05D006175 ORTHO05D008081 5.1e-216 754.6 526 71.1
Gorai.009G004100 Gossypium raimondii HOM05D006175 ORTHO05D008081 8.7e-216 753.8 529 71.6
CiPaw.15G150200 Carya illinoinensis HOM05D006175 ORTHO05D008081 1.9e-215 752.7 534 70.4
PGR083G2599 Punica granatum HOM05D006175 ORTHO05D008081 1.6e-214 749.6 525 69.5
Sed0010232 Sechium edule HOM05D006175 ORTHO05D008081 1.1e-213 746.9 524 70.4
VMungo0464G1920 Vigna mungo HOM05D006175 ORTHO05D008081 1.1e-213 746.9 531 69.3
arahy.Tifrunner.gnm1.ann1.R57YID Arachis hypogaea HOM05D006175 ORTHO05D008081 5.3e-213 744.6 535 69.7
GSVIVG01008158001 Vitis vinifera HOM05D006175 ORTHO05D008081 5.3e-213 744.6 524 71.2
Lj2g0014656 Lotus japonicus HOM05D006175 ORTHO05D008081 6.9e-213 744.2 531 69.3
MELO3C001937.2 Cucumis melo HOM05D006175 ORTHO05D008081 1.2e-212 743.4 525 69.9
QL10p033089 Quercus lobata HOM05D006175 ORTHO05D008081 1.5e-212 743.0 566 66.8
Glyma.16G218700 Glycine max HOM05D006175 ORTHO05D008081 3.4e-212 741.9 519 69.6
arahy.Tifrunner.gnm1.ann1.SV5NHS Arachis hypogaea HOM05D006175 ORTHO05D008081 1.4e-210 736.5 544 68.6
ClCG04G012690 Citrullus lanatus HOM05D006175 ORTHO05D008081 9.3e-210 733.8 529 69.4
CsaV3_1G032270 Cucumis sativus L. HOM05D006175 ORTHO05D008081 6.0e-209 731.1 525 69.7
Oeu019145.1 Olea europaea HOM05D006175 ORTHO05D008081 6.0e-209 731.1 536 67.5
PGSC0003DMG400031043 Solanum tuberosum HOM05D006175 ORTHO05D008081 1.8e-208 729.6 525 68.0
Cc04_g09090 Coffea canephora HOM05D006175 ORTHO05D008081 3.3e-207 725.3 527 68.5
Solyc03g098250.4 Solanum lycopersicum HOM05D006175 ORTHO05D008081 3.3e-207 725.3 525 67.6
FvH4_5g17980 Fragaria vesca HOM05D006175 ORTHO05D008081 1.2e-204 716.8 521 68.1
Sopen03g028960 Solanum pennellii HOM05D006175 ORTHO05D008081 2.0e-204 716.1 525 67.4
Sabra12G0027800 Salix brachista HOM05D006175 ORTHO05D008081 2.6e-204 715.7 541 68.2
DCAR_023267 Daucus carota HOM05D006175 ORTHO05D008081 2.9e-203 712.2 565 64.6
Migut.O00238 Erythranthe guttata HOM05D006175 ORTHO05D008081 2.9e-203 712.2 530 67.0
Cpa.g.sc103.12 Carica papaya HOM05D006175 ORTHO05D008081 4.6e-201 704.9 522 68.0
RcHm_v2.0_Chr7g0177621 Rosa chinensis HOM05D006175 ORTHO05D008081 4.6e-201 704.9 537 65.9
CAN.G637.8 Capsicum annuum HOM05D006175 ORTHO05D008081 5.1e-200 701.4 526 66.5
Aqoxy2G03817 Aquilegia oxysepala HOM05D006175 ORTHO05D008081 3.3e-199 698.7 525 66.3
PSO782G5703 Papaver somniferum HOM05D006175 ORTHO05D008081 2.8e-198 695.7 523 66.0
Prupe.8G055400 Prunus persica HOM05D006175 ORTHO05D008081 3.7e-198 695.3 532 66.0
Zm00001eb037700 Zea mays HOM05D006175 ORTHO05D008081 3.7e-198 695.3 524 64.7
Medtr6g075170 Medicago truncatula HOM05D006175 ORTHO05D008081 4.8e-198 694.9 527 66.0
ECA238G0751 Erigeron canadensis HOM05D006175 ORTHO05D008081 8.2e-198 694.1 522 65.7
PSO063G7422 Papaver somniferum HOM05D006175 ORTHO05D008081 1.8e-197 693.0 523 65.6
TAR622G0246 Trochodendron aralioides HOM05D006175 ORTHO05D008081 1.8e-197 693.0 477 72.5
Manes.03G098800 Manihot esculenta HOM05D006175 ORTHO05D008081 3.1e-197 692.2 490 70.4
TPR.G28014 Trifolium pratense HOM05D006175 ORTHO05D008081 3.1e-197 692.2 549 63.8
SHI32102 Sapria himalayana HOM05D006175 ORTHO05D008081 2.6e-196 689.1 559 63.1
SGA_v2.0_scaffold90G27775 Striga asiatica HOM05D006175 ORTHO05D008081 1.7e-195 686.4 530 65.7
Sc10g0008900 Simmondsia chinensis HOM05D006175 ORTHO05D008081 1.4e-194 683.3 533 63.4
SEGI_25528 Sequoiadendron giganteum HOM05D006175 ORTHO05D008081 3.2e-194 682.2 531 63.3
Peaxi162Scf00171g00431 Petunia axillaris HOM05D006175 ORTHO05D008081 1.2e-193 680.2 530 64.9
EL10Ac3g05085 Beta vulgaris HOM05D006175 ORTHO05D008081 4.7e-193 678.3 521 64.3
Dinv02367 Davidia involucrata HOM05D006175 ORTHO05D008081 7.9e-193 677.6 526 67.3
SalBow5G1258 Salvia bowleyana HOM05D006175 ORTHO05D008081 5.1e-192 674.9 543 63.2
Os05g0160800 Oryza sativa ssp. japonica HOM05D006175 ORTHO05D008081 2.8e-190 669.1 503 65.2
Lsat_1_v5_gn_2_15241 Lactuca sativa HOM05D006175 ORTHO05D008081 1.2e-188 663.7 523 63.3
MD06G1235400 Malus domestica HOM05D006175 ORTHO05D008081 3.8e-187 658.7 531 64.6
CSS0011699 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D008081 6.3e-182 641.3 544 61.9
vmacro03513 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 4.5e-180 635.2 609 56.3
Nitab4.5_0005973g0040 Nicotiana tabacum HOM05D006175 ORTHO05D008081 3.0e-176 622.5 545 60.2
Lj5A165T85 Lonicera japonica HOM05D006175 ORTHO05D008081 8.8e-176 620.9 480 66.0
COL.COLO4_27108 Corchorus olitorius HOM05D006175 ORTHO05D008081 2.2e-171 606.3 509 61.5
Ah.04g156800 Amaranthus hybridus HOM05D006175 ORTHO05D008081 1.8e-168 596.7 521 57.6
Haze_18963 Corylus avellana HOM05D006175 ORTHO05D008081 1.7e-166 590.1 521 59.1
Hund09784 Selenicereus undatus HOM05D006175 ORTHO05D008081 3.7e-166 589.0 522 59.4
Pp3c16_3220 Physcomitrium patens HOM05D006175 ORTHO05D008081 7.7e-164 581.3 525 53.3
AUR62002056 Chenopodium quinoa HOM05D006175 ORTHO05D008081 2.8e-161 572.8 583 52.8
SMO089G0008 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 3.0e-160 569.3 529 53.3
ATR0598G269 Amborella trichopoda HOM05D006175 ORTHO05D008081 4.9e-158 562.0 530 55.5
Nitab4.5_0001180g0190 Nicotiana tabacum HOM05D006175 ORTHO05D008081 4.0e-152 542.3 534 55.2
vmacro01251 Vaccinium macrocarpon HOM05D006175 ORTHO05D008081 4.0e-152 542.3 622 50.8
AUR62028170 Chenopodium quinoa HOM05D006175 ORTHO05D008081 5.8e-151 538.5 521 53.9
Mapoly0003s0120 Marchantia polymorpha HOM05D006175 ORTHO05D008081 9.8e-151 537.7 523 50.1
HPP92_019162 Vanilla planifolia HOM05D006175 ORTHO05D008081 3.3e-146 522.7 523 53.3
SMO200G0091 Selaginella moellendorffii HOM05D006175 ORTHO05D008081 4.7e-145 518.8 535 49.3
Prupe.5G240100 Prunus persica HOM05D006175 ORTHO05D008081 4.0e-144 515.8 553 53.2
Lalb_Chr22g0353691 Lupinus albus HOM05D006175 ORTHO05D008081 5.6e-138 495.4 301 78.1
HanXRQChr05g0129731 Helianthus annuus HOM05D006175 ORTHO05D008081 1.1e-133 481.1 316 72.2
Rhsim06G0000100 Rhododendron simsii HOM05D006175 ORTHO05D008081 9.3e-125 451.4 300 69.7
HanXRQChr11g0338981 Helianthus annuus HOM05D006175 ORTHO05D008081 4.3e-122 442.6 301 70.8
AagrBONN_evm.TU.Sc2ySwM_369.495 Anthoceros agrestis HOM05D006175 ORTHO05D008081 9.6e-122 441.4 530 43.6
Psat6g072600 Pisum sativum HOM05D006175 ORTHO05D008081 7.9e-116 421.8 554 46.8
MD14G1242400 Malus domestica HOM05D006175 ORTHO05D008081 2.5e-114 416.8 453 52.1
AL4G26880 Arabidopsis lyrata HOM05D006175 ORTHO05D008081 7.6e-103 378.6 371 57.1
FAN18G1603 Fragaria x ananassa HOM05D006175 ORTHO05D008081 1.1e-101 374.8 232 75.9
unitig_0.g1094 Utricularia gibba HOM05D006175 ORTHO05D008081 6.7e-99 365.5 561 41.2
Glyma.09G169100 Glycine max HOM05D006175 ORTHO05D008081 3.1e-96 356.7 309 60.5
MCO14G014 Micromonas commoda HOM05D006175 ORTHO05D008081 1.3e-94 351.3 629 33.2
Cre10.g424200 Chlamydomonas reinhardtii HOM05D006175 ORTHO05D008081 1.1e-82 311.6 570 34.9
PRCOL_00003367 Prasinoderma coloniale HOM05D006175 ORTHO05D008081 4.1e-72 276.6 566 33.6
VMungo1215G0683 Vigna mungo HOM05D006175 ORTHO05D008081 2.9e-62 243.8 221 57.9
Lalb_Chr22g0353701 Lupinus albus HOM05D006175 ORTHO05D008081 1.2e-60 238.4 211 59.7
AUR62043421 Chenopodium quinoa HOM05D006175 ORTHO05D008081 3.7e-57 226.9 173 63.6
FAN04G2119 Fragaria x ananassa HOM05D006175 ORTHO05D008081 8.0e-52 209.1 203 57.1
FAN08G2730 Fragaria x ananassa HOM05D006175 ORTHO05D008081 4.0e-51 206.8 203 56.2
FAN13G0892 Fragaria x ananassa HOM05D006175 ORTHO05D008081 8.8e-51 205.7 203 56.2
HanXRQChr05g0129721 Helianthus annuus HOM05D006175 ORTHO05D008081 3.4e-50 203.8 209 53.1
HanXRQChr11g0338971 Helianthus annuus HOM05D006175 ORTHO05D008081 6.3e-49 199.5 205 53.7
CDE04G1443 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.6e-42 177.6 104 76.9
CDE04G2185 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 2.9e-33 147.5 85 77.6
Ca_23674_v3 Cicer arietinum L. HOM05D006175 ORTHO05D008081 5.4e-32 143.3 181 44.2
Thecc.10G092900 Theobroma cacao HOM05D006175 ORTHO05D008952 8.3e-25 119.4 131 54.2
CDE04G3312 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 6.0e-23 113.2 325 28.6
Cfa025039 Carpinus fangiana HOM05D006175 ORTHO05D008081 1.0e-22 112.5 441 24.0
Thecc.04G242900 Theobroma cacao HOM05D006175 ORTHO05D008081 6.8e-11 73.2 48 72.9
BcaC05g28616 Brassica carinata HOM05D002760 ORTHO05D001361 1.5e-10 72.0 31 93.5
A07p06810 Brassica napus HOM05D002760 ORTHO05D003169 1.5e-10 72.0 31 93.5
BNapus_Darmor_BZH_scaffold_38p01460 Brassica napus HOM05D002760 ORTHO05D003169 1.5e-10 72.0 31 93.5
BraA03t12607Z Brassica rapa HOM05D002760 ORTHO05D003169 1.5e-10 72.0 31 93.5
C05p47240 Brassica napus HOM05D002760 ORTHO05D003169 4.4e-10 70.5 31 90.3
CSS0024377 Camellia sinensis var. sinensis HOM05D006175 ORTHO05D043346 4.4e-10 70.5 48 70.8
CDE04G3394 Ceratophyllum demersum HOM05D006175 ORTHO05D008081 1.6e-07 62.0 78 43.6


User provided reference genes

Program Settings