Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G19470 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 3.0e-215 751.5 366 100.0
AL6G30960 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 5.9e-203 710.7 366 94.3
Thhalv10013889m.g Eutrema salsugineum HOM05D006224 ORTHO05D007691 2.1e-168 595.9 374 80.2
AL6G30950 Arabidopsis lyrata HOM05D006224 ORTHO05D007691 8.0e-168 594.0 374 79.7
Carub.0006s1780 Capsella rubella HOM05D006224 ORTHO05D007691 3.7e-165 585.1 379 77.0
AT5G19460 Arabidopsis thaliana HOM05D006224 ORTHO05D007691 7.0e-164 580.9 378 76.5
Sp6g24950 Schrenkiella parvula HOM05D006224 ORTHO05D007691 9.2e-164 580.5 376 78.2
BolC9t58538H Brassica oleracea HOM05D006224 ORTHO05D007691 3.3e-161 572.0 377 77.5
A10p20240 Brassica napus HOM05D006224 ORTHO05D007691 7.5e-150 534.3 358 76.5
C09p56840 Brassica napus HOM05D006224 ORTHO05D007691 4.1e-148 528.5 377 73.2
Aa31LG11G5060 Aethionema arabicum HOM05D006224 ORTHO05D007691 7.8e-147 524.2 359 71.6
BraA10t44095Z Brassica rapa HOM05D006224 ORTHO05D007691 4.7e-136 488.4 332 75.6
THA.LOC104799742 Tarenaya hassleriana HOM05D006224 ORTHO05D007691 1.1e-124 450.7 279 76.0
QL02p086060 Quercus lobata HOM05D006224 ORTHO05D007691 2.1e-123 446.4 358 62.6
Atru.chr7.1298 Acer truncatum HOM05D006224 ORTHO05D007691 6.6e-122 441.4 331 63.7
Dinv41578 Davidia involucrata HOM05D006224 ORTHO05D007691 7.4e-121 438.0 333 63.7
Ciclev10008608m.g Citrus clementina HOM05D006224 ORTHO05D007691 9.6e-121 437.6 360 59.2
Cfa003290 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.3e-120 437.2 355 61.7
Actinidia07421 Actinidia chinensis HOM05D006224 ORTHO05D007691 3.6e-120 435.6 371 62.0
Cpa.g.sc23.139 Carica papaya HOM05D006224 ORTHO05D007691 2.4e-119 433.0 345 61.7
Gorai.004G279400 Gossypium raimondii HOM05D006224 ORTHO05D007691 3.1e-119 432.6 360 58.1
Gohir.D08G261300 Gossypium hirsutum HOM05D006224 ORTHO05D007691 6.9e-119 431.4 360 57.8
Thecc.09G114600 Theobroma cacao HOM05D006224 ORTHO05D007691 9.0e-119 431.0 316 64.6
MD15G1189600 Malus domestica HOM05D006224 ORTHO05D007691 4.5e-118 428.7 348 60.1
Manes.16G071100 Manihot esculenta HOM05D006224 ORTHO05D007691 9.9e-118 427.6 317 64.4
GSVIVG01015431001 Vitis vinifera HOM05D006224 ORTHO05D007691 1.3e-117 427.2 350 60.6
Gohir.A08G240600 Gossypium hirsutum HOM05D006224 ORTHO05D007691 2.2e-117 426.4 360 57.2
QL02p086023 Quercus lobata HOM05D006224 ORTHO05D007691 1.1e-116 424.1 361 59.8
GSVIVG01015429001 Vitis vinifera HOM05D006224 ORTHO05D007691 2.4e-116 422.9 350 59.7
TWI34G0303 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 4.2e-116 422.2 367 57.8
Potri.006G157700 Populus trichocarpa HOM05D006224 ORTHO05D007691 5.5e-116 421.8 321 63.6
TWI34G1467 Tripterygium wilfordii HOM05D006224 ORTHO05D007691 9.3e-116 421.0 336 61.9
Haze_25683 Corylus avellana HOM05D006224 ORTHO05D007691 1.6e-115 420.2 379 57.0
Eucgr.E02819 Eucalyptus grandis HOM05D006224 ORTHO05D007691 1.6e-115 420.2 365 57.5
Ciclev10008605m.g Citrus clementina HOM05D006224 ORTHO05D007691 3.5e-115 419.1 360 56.9
Cc06_g09350 Coffea canephora HOM05D006224 ORTHO05D007691 3.5e-115 419.1 372 57.5
TAR383G0021 Trochodendron aralioides HOM05D006224 ORTHO05D007691 4.6e-115 418.7 323 61.9
Lalb_Chr14g0371331 Lupinus albus HOM05D006224 ORTHO05D007691 1.8e-114 416.8 384 58.3
CiPaw.03G235000 Carya illinoinensis HOM05D006224 ORTHO05D007691 2.3e-114 416.4 326 62.6
VMungo0464G0392 Vigna mungo HOM05D006224 ORTHO05D007691 6.7e-114 414.8 321 63.6
Lsat_1_v5_gn_8_94740 Lactuca sativa HOM05D006224 ORTHO05D007691 8.7e-114 414.5 318 62.3
Migut.K00473 Erythranthe guttata HOM05D006224 ORTHO05D007691 3.3e-113 412.5 338 60.4
FvH4_1g05360 Fragaria vesca HOM05D006224 ORTHO05D007691 9.6e-113 411.0 346 59.2
Ca_30117_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 1.3e-112 410.6 316 64.2
PSO782G3139 Papaver somniferum HOM05D006224 ORTHO05D007691 1.6e-112 410.2 322 60.2
PGR042G0994 Punica granatum HOM05D006224 ORTHO05D007691 2.1e-112 409.8 401 52.6
vmacro06195 Vaccinium macrocarpon HOM05D006224 ORTHO05D007691 2.1e-112 409.8 379 56.2
Duzib187G0885 Durio zibethinus HOM05D006224 ORTHO05D007691 2.8e-112 409.5 338 60.1
CANSAT56G1593 Cannabis sativa HOM05D006224 ORTHO05D007691 3.7e-112 409.1 367 57.2
Glyma.09G187600 Glycine max HOM05D006224 ORTHO05D007691 4.8e-112 408.7 359 57.9
Lj2g0020407 Lotus japonicus HOM05D006224 ORTHO05D007691 1.4e-111 407.1 366 58.5
FAN23G1546 Fragaria x ananassa HOM05D006224 ORTHO05D007691 1.8e-111 406.8 313 61.3
HanXRQChr05g0138301 Helianthus annuus HOM05D006224 ORTHO05D007691 1.8e-111 406.8 374 55.1
PSO063G0773 Papaver somniferum HOM05D006224 ORTHO05D007691 1.8e-111 406.8 333 58.0
Sed0009228 Sechium edule HOM05D006224 ORTHO05D007691 1.8e-111 406.8 357 55.2
CANSAT56G0016 Cannabis sativa HOM05D006224 ORTHO05D007691 2.4e-111 406.4 367 57.2
AUR62011028 Chenopodium quinoa HOM05D006224 ORTHO05D007691 4.0e-111 405.6 341 58.9
RcHm_v2.0_Chr2g0091041 Rosa chinensis HOM05D006224 ORTHO05D007691 5.3e-111 405.2 313 62.0
Aqoxy5G03788 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 9.0e-111 404.4 317 59.6
FAN19G0264 Fragaria x ananassa HOM05D006224 ORTHO05D007691 9.0e-111 404.4 351 58.1
SalBow1G0968 Salvia bowleyana HOM05D006224 ORTHO05D007691 9.0e-111 404.4 385 54.0
Hund26119 Selenicereus undatus HOM05D006224 ORTHO05D007691 1.2e-110 404.1 370 56.2
HPP92_009101 Vanilla planifolia HOM05D006224 ORTHO05D007691 2.6e-110 402.9 336 58.0
MELO3C025318.2 Cucumis melo HOM05D006224 ORTHO05D007691 5.8e-110 401.7 364 54.7
FAN26G2363 Fragaria x ananassa HOM05D006224 ORTHO05D007691 5.8e-110 401.7 313 61.0
DCAR_010440 Daucus carota HOM05D006224 ORTHO05D007691 1.0e-109 401.0 330 60.0
Phvul.004G160700 Phaseolus vulgaris HOM05D006224 ORTHO05D007691 1.0e-109 401.0 372 56.7
arahy.Tifrunner.gnm1.ann1.X15ZNM Arachis hypogaea HOM05D006224 ORTHO05D007691 1.4e-108 397.1 368 56.2
Medtr6g086510 Medicago truncatula HOM05D006224 ORTHO05D007691 1.9e-108 396.7 372 55.9
Glyma.18G076000 Glycine max HOM05D006224 ORTHO05D007691 3.2e-108 396.0 374 55.9
Nitab4.5_0002361g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 3.2e-108 396.0 317 61.5
ClCG06G010400 Citrullus lanatus HOM05D006224 ORTHO05D007691 4.2e-108 395.6 357 54.1
arahy.Tifrunner.gnm1.ann1.NKB3PQ Arachis hypogaea HOM05D006224 ORTHO05D007691 7.1e-108 394.8 370 56.2
Zm00001eb309830 Zea mays HOM05D006224 ORTHO05D007691 1.2e-107 394.0 296 61.1
Rhsim03G0244800 Rhododendron simsii HOM05D006224 ORTHO05D007691 1.6e-107 393.7 372 53.5
Solyc07g009170.4 Solanum lycopersicum HOM05D006224 ORTHO05D007691 2.1e-107 393.3 345 56.5
CDE04G0176 Ceratophyllum demersum HOM05D006224 ORTHO05D007691 2.7e-107 392.9 371 54.7
Nitab4.5_0013433g0030 Nicotiana tabacum HOM05D006224 ORTHO05D007691 2.7e-107 392.9 316 61.4
Sopen07g017160 Solanum pennellii HOM05D006224 ORTHO05D007691 4.6e-107 392.1 345 57.1
PGSC0003DMG400024204 Solanum tuberosum HOM05D006224 ORTHO05D007691 4.6e-107 392.1 367 55.0
Psat1g037920 Pisum sativum HOM05D006224 ORTHO05D007691 6.0e-107 391.7 298 64.8
CsaV3_1G030820 Cucumis sativus L. HOM05D006224 ORTHO05D007691 7.9e-107 391.3 357 54.9
ClCG00G002210 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.0e-106 391.0 313 59.4
ClCG06G010410 Citrullus lanatus HOM05D006224 ORTHO05D007691 1.0e-106 391.0 313 59.4
Sc08g0007140 Simmondsia chinensis HOM05D006224 ORTHO05D007691 3.0e-106 389.4 345 58.8
MBI06_g04550_MAGBIO Magnolia biondii HOM05D006224 ORTHO05D007691 6.7e-106 388.3 371 53.9
ATR0037G051 Amborella trichopoda HOM05D006224 ORTHO05D007691 1.1e-105 387.5 333 55.9
Sabra06G0124600 Salix brachista HOM05D006224 ORTHO05D007691 1.1e-105 387.5 311 61.1
EL10Ac8g18541 Beta vulgaris HOM05D006224 ORTHO05D007691 2.1e-104 383.3 338 56.5
FAN28G2414 Fragaria x ananassa HOM05D006224 ORTHO05D007691 8.2e-104 381.3 331 56.8
Ca_25513_v3 Cicer arietinum L. HOM05D006224 ORTHO05D007691 6.9e-103 378.3 280 66.8
CSS0033373 Camellia sinensis var. sinensis HOM05D006224 ORTHO05D007691 1.5e-102 377.1 335 59.1
ClCG00G002580 Citrullus lanatus HOM05D006224 ORTHO05D007691 2.6e-102 376.3 341 54.0
SGA_v2.0_scaffold23G10152 Striga asiatica HOM05D006224 ORTHO05D007691 4.5e-102 375.6 372 54.3
Peaxi162Scf00560g00629 Petunia axillaris HOM05D006224 ORTHO05D007691 2.5e-100 369.8 371 53.4
ECA236G3755 Erigeron canadensis HOM05D006224 ORTHO05D007691 7.2e-100 368.2 278 63.3
Aqoxy5G03790 Aquilegia oxysepala HOM05D006224 ORTHO05D007691 1.6e-99 367.1 341 53.7
FAN26G3318 Fragaria x ananassa HOM05D006224 ORTHO05D007691 5.7e-97 358.6 342 53.5
Oeu060631.1 Olea europaea HOM05D006224 ORTHO05D007691 7.4e-97 358.2 341 56.0
TPR.G31456 Trifolium pratense HOM05D006224 ORTHO05D007691 8.2e-96 354.8 330 56.1
CAN.G929.19 Capsicum annuum HOM05D006224 ORTHO05D007691 3.1e-95 352.8 273 62.3
TPR.G31453 Trifolium pratense HOM05D006224 ORTHO05D007691 3.8e-93 345.9 337 52.8
Nn8g39262 Nelumbo nucifera HOM05D006224 ORTHO05D007691 1.4e-92 344.0 370 50.0
Pp3c12_9090 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.7e-88 330.5 299 52.5
Mapoly0084s0007 Marchantia polymorpha HOM05D006224 ORTHO05D007691 6.3e-88 328.6 305 51.1
Potri.006G157800 Populus trichocarpa HOM05D006224 ORTHO05D007691 1.8e-87 327.0 321 53.6
SMO347G0504 Selaginella moellendorffii HOM05D006224 ORTHO05D007691 3.0e-82 309.7 286 52.8
Cre13.g582201 Chlamydomonas reinhardtii HOM05D006224 ORTHO05D007691 6.7e-82 308.5 296 52.0
Peaxi162Scf00560g00615 Petunia axillaris HOM05D006224 ORTHO05D007691 1.9e-76 290.4 327 48.6
Lj7A644T17 Lonicera japonica HOM05D006224 ORTHO05D007691 3.2e-76 289.7 360 45.6
HanXRQChr05g0139161 Helianthus annuus HOM05D006224 ORTHO05D007691 2.0e-73 280.4 353 46.7
AagrBONN_evm.TU.Sc2ySwM_228.2202 Anthoceros agrestis HOM05D006224 ORTHO05D007691 1.6e-67 260.8 213 56.8
Prupe.7G186600 Prunus persica HOM05D006224 ORTHO05D007691 8.0e-67 258.5 208 60.6
unitig_748.g7154 Utricularia gibba HOM05D006224 ORTHO05D007691 5.2e-66 255.8 211 58.3
Pp3c6_16000 Physcomitrium patens HOM05D006224 ORTHO05D007691 1.4e-63 247.7 295 42.7
MCO11G748 Micromonas commoda HOM05D006224 ORTHO05D007691 1.7e-61 240.7 286 43.7
Pp3c3_27400 Physcomitrium patens HOM05D006224 ORTHO05D007691 8.0e-59 231.9 288 39.9
AUR62033400 Chenopodium quinoa HOM05D006224 ORTHO05D007691 1.8e-58 230.7 267 48.3
PRCOL_00004258 Prasinoderma coloniale HOM05D006224 ORTHO05D007691 4.4e-57 226.1 290 43.1
CARHR193460 Cardamine hirsuta HOM05D006224 ORTHO05D007691 5.7e-57 225.7 129 82.2
Os09g0322200 Oryza sativa ssp. japonica HOM05D006224 ORTHO05D007691 1.2e-35 154.8 147 51.0
unitig_748.g7155 Utricularia gibba HOM05D006224 ORTHO05D007691 5.1e-29 132.9 84 69.0
Ah.09g227190 Amaranthus hybridus HOM05D006224 ORTHO05D007691 1.9e-28 131.0 90 67.8
Cfa025487 Carpinus fangiana HOM05D006224 ORTHO05D007691 1.2e-27 128.3 250 33.6
SEGI_32758 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 6.2e-19 99.4 70 61.4
MSTRG.26438 Avicennia marina HOM05D006224 ORTHO05D007691 3.1e-10 70.5 108 42.6
SEGI_12041 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 1.3e-08 65.1 69 50.7
vmacro11393 Vaccinium macrocarpon HOM05D003441 ORTHO05D004516 2.2e-08 64.3 42 64.3
SEGI_03040 Sequoiadendron giganteum HOM05D006224 ORTHO05D007691 5.4e-07 59.7 36 66.7


User provided reference genes

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