Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 2.9e-257 891.3 442 100.0
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 2.5e-224 781.9 441 87.8
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 9.2e-219 763.5 435 85.1
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.6e-215 752.7 443 84.4
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 2.6e-213 745.3 430 83.7
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.5e-208 729.6 434 81.3
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 3.3e-208 728.4 448 79.7
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 2.1e-207 725.7 454 78.6
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 4.0e-206 721.5 450 78.9
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 5.3e-206 721.1 455 78.5
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 7.6e-205 717.2 456 78.7
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.9e-203 712.6 382 91.6
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 4.2e-203 711.4 456 78.5
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 2.3e-201 705.7 455 76.7
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 7.6e-189 664.1 426 77.7
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.4e-158 563.5 431 62.6
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.2e-157 560.5 431 62.4
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 2.9e-156 555.8 432 63.4
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.1e-155 553.9 432 63.4
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.1e-155 553.9 434 62.0
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.1e-155 553.9 432 63.0
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.5e-155 552.7 432 63.0
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 3.2e-155 552.4 428 62.6
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.2e-154 550.4 434 62.4
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 2.1e-154 549.7 437 62.9
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 2.1e-154 549.7 432 63.0
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 3.6e-154 548.9 431 61.5
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 6.1e-154 548.1 433 61.7
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 6.1e-154 548.1 432 62.5
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 3.0e-153 545.8 441 61.7
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 3.9e-153 545.4 434 60.6
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 1.5e-152 543.5 435 60.5
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.5e-152 543.5 437 61.3
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.5e-152 543.5 432 63.7
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 4.4e-152 542.0 437 60.6
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.3e-151 540.4 437 62.0
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.7e-151 540.0 435 61.4
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 1.7e-151 540.0 435 61.4
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 4.8e-151 538.5 411 63.0
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.1e-150 537.3 435 60.9
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 1.4e-150 537.0 429 61.1
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.8e-150 536.6 432 60.9
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 9.1e-150 534.3 429 59.9
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 2.6e-149 532.7 433 59.4
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 3.5e-149 532.3 429 60.4
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 3.8e-148 528.9 437 59.7
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 6.5e-148 528.1 429 59.7
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.5e-147 526.9 433 59.1
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.9e-147 526.6 433 59.4
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 7.2e-147 524.6 461 56.2
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 2.1e-146 523.1 437 58.6
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 8.0e-146 521.2 430 60.7
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 1.4e-145 520.4 433 58.9
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 1.8e-145 520.0 431 58.2
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.8e-145 520.0 437 58.6
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 2.3e-145 519.6 438 58.7
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.3e-145 519.6 435 58.2
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 4.0e-145 518.8 438 58.9
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 6.8e-145 518.1 390 64.9
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 3.4e-144 515.8 436 57.1
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 4.4e-144 515.4 433 57.0
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 5.7e-144 515.0 458 55.9
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.7e-143 513.5 434 58.8
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 2.8e-143 512.7 436 58.3
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 8.3e-143 511.1 430 60.0
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 1.8e-142 510.0 429 57.6
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.8e-142 510.0 450 57.1
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.6e-141 506.9 451 55.7
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 3.5e-141 505.8 431 57.8
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 3.5e-141 505.8 444 57.7
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 4.5e-141 505.4 433 57.0
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 7.7e-141 504.6 417 57.3
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 6.5e-140 501.5 452 55.1
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 5.5e-139 498.4 390 63.3
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.5e-136 490.3 435 56.6
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.6e-136 489.6 401 59.4
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 2.6e-136 489.6 401 59.4
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 2.6e-136 489.6 436 56.9
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 7.5e-136 488.0 436 55.5
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 9.8e-136 487.6 403 59.8
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 2.2e-135 486.5 437 57.0
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 1.1e-134 484.2 436 54.1
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 5.4e-134 481.9 429 57.3
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 9.1e-134 481.1 446 54.7
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 3.5e-133 479.2 439 57.2
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 2.3e-132 476.5 444 60.8
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 3.8e-132 475.7 462 53.9
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 5.0e-132 475.3 435 53.8
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 3.3e-131 472.6 439 56.7
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 4.2e-131 472.2 405 57.0
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 1.5e-128 463.8 419 55.4
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.6e-125 453.8 435 53.3
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.2e-122 444.1 431 53.4
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 3.6e-122 442.6 431 53.4
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 4.7e-122 442.2 433 51.0
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 8.0e-122 441.4 377 56.8
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 1.8e-121 440.3 363 60.9
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 3.4e-120 436.0 395 56.5
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 5.8e-120 435.3 386 54.7
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 9.8e-120 434.5 361 57.1
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 9.8e-120 434.5 395 56.2
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.7e-119 433.7 437 49.9
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.2e-119 433.3 382 56.8
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 1.1e-118 431.0 432 52.5
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.1e-118 431.0 428 51.9
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.9e-118 430.3 344 61.9
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.0e-117 426.8 430 51.4
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.0e-116 424.5 350 60.3
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.9e-115 420.2 435 51.7
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.8e-113 413.7 433 50.3
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 3.4e-112 409.5 398 51.0
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.4e-112 409.1 304 63.8
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 1.6e-109 400.6 299 64.5
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.1e-107 394.4 438 48.4
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 9.5e-107 391.3 442 49.1
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.6e-106 390.6 468 45.9
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.2e-103 380.2 353 55.0
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 1.4e-102 377.5 436 48.6
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.2e-101 374.4 328 55.2
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 9.6e-99 364.8 386 48.4
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 1.6e-90 337.4 283 57.6
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 3.9e-84 316.2 322 50.0
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 4.0e-81 306.2 347 45.8
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 8.7e-76 288.5 275 52.4
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 1.1e-75 288.1 233 58.4
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.5e-75 287.0 275 50.9
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.5e-72 277.7 275 49.8
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 5.8e-72 275.8 275 49.8
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.7e-71 274.2 328 40.5
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 6.0e-69 265.8 292 45.2
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.5e-67 261.2 275 48.7
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 3.1e-65 253.4 157 80.3
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.5e-64 251.1 177 73.4
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.6e-64 250.4 163 77.3
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 4.5e-64 249.6 157 79.6
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 1.4e-62 244.6 154 79.2
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 7.1e-62 242.3 156 76.9
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 7.9e-61 238.8 370 36.5
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 5.3e-57 226.1 184 66.3
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 2.6e-56 223.8 513 34.1
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.6e-56 223.8 154 74.0
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 5.9e-56 222.6 141 78.7
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 9.4e-54 215.3 131 87.0
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 7.4e-51 205.7 133 79.7
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 7.4e-51 205.7 275 40.0
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.2e-50 204.1 223 46.6
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 1.1e-49 201.8 162 54.9
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 8.5e-47 192.2 183 57.4
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 7.2e-46 189.1 122 74.6
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.0e-44 183.7 231 41.1
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 3.1e-41 173.7 99 88.9
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 5.3e-41 172.9 462 29.2
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 5.9e-40 169.5 155 51.0
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 1.9e-38 164.5 178 53.4
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 1.1e-35 155.2 106 70.8
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.2e-32 145.2 303 33.3
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 7.2e-30 136.0 130 55.4
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 4.4e-27 126.7 147 47.6
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.4e-25 121.7 68 91.2
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 3.8e-23 113.6 248 31.9
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 1.8e-20 104.8 58 91.4
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 2.6e-19 100.9 119 41.2
BraA07t29344Z Brassica rapa HOM05D004012 ORTHO05D004752 3.4e-19 100.5 51 86.3
BraA03t15035Z Brassica rapa HOM05D004012 ORTHO05D004752 4.4e-19 100.1 50 88.0
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 5.7e-19 99.8 55 90.9
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 7.7e-16 89.4 242 30.2
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.9e-14 84.7 99 42.4
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 7.5e-11 72.8 53 62.3
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 2.0e-08 64.7 68 39.7


User provided reference genes

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