Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 2.2e-234 815.8 610 100.0
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 1.5e-222 776.5 610 96.6
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 1.1e-201 707.2 609 90.6
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 5.0e-191 671.8 608 86.3
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 8.6e-191 671.0 607 87.8
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 4.6e-184 648.7 613 86.8
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 4.6e-184 648.7 613 86.8
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 1.4e-180 637.1 614 86.0
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 1.2e-179 634.0 614 86.0
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 9.9e-171 604.4 613 83.5
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 4.9e-162 575.5 407 73.7
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 7.9e-136 488.4 355 72.1
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 1.3e-125 454.5 627 65.1
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 2.2e-93 347.4 416 48.8
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 1.5e-86 324.7 403 47.4
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 1.6e-83 314.7 402 46.5
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 4.6e-83 313.2 412 44.9
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 4.6e-83 313.2 410 43.7
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 1.3e-82 311.6 329 49.2
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 1.7e-82 311.2 329 48.6
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 1.7e-82 311.2 329 49.5
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 2.3e-82 310.8 328 49.4
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 1.5e-81 308.1 403 44.7
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 3.3e-81 307.0 409 45.2
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 3.3e-81 307.0 329 48.0
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 7.3e-81 305.8 325 50.8
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.6e-80 304.7 410 44.6
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 3.6e-80 303.5 363 47.4
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 4.0e-79 300.1 389 45.2
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 9.8e-78 295.4 412 44.4
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 3.7e-77 293.5 372 45.4
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 4.9e-77 293.1 364 45.6
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 6.4e-77 292.7 415 42.9
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 6.4e-77 292.7 407 44.5
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 1.4e-76 291.6 367 45.2
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 1.9e-76 291.2 384 45.8
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 4.1e-76 290.0 368 46.2
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 5.4e-76 289.7 393 44.3
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 7.0e-76 289.3 364 45.3
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 2.0e-75 287.7 412 42.7
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 4.6e-75 286.6 409 42.8
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 2.3e-74 284.3 377 43.2
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 3.0e-74 283.9 328 47.3
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 6.6e-74 282.7 399 44.1
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 2.5e-73 280.8 388 42.0
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 3.3e-73 280.4 393 43.5
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 2.8e-72 277.3 389 43.2
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 1.1e-71 275.4 420 40.0
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 4.0e-71 273.5 412 39.8
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 1.5e-70 271.6 323 45.8
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 2.4e-68 264.2 395 40.3
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 4.1e-68 263.5 394 40.4
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 5.4e-68 263.1 369 43.4
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 1.2e-67 261.9 382 41.4
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 2.7e-67 260.8 382 41.1
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 7.8e-67 259.2 410 40.0
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 2.5e-65 254.2 327 43.1
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 1.2e-64 251.9 416 40.6
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 3.4e-62 243.8 392 38.3
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 8.4e-61 239.2 337 40.1
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 7.1e-60 236.1 413 38.3
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 1.6e-59 235.0 379 38.3
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 3.5e-59 233.8 345 39.7
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 3.3e-57 227.3 357 37.5
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 4.4e-54 216.9 312 42.3
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 5.8e-54 216.5 325 41.2
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 7.6e-54 216.1 360 34.4
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 1.4e-52 211.8 326 40.8
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 2.7e-51 207.6 294 43.5
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 3.5e-51 207.2 238 47.9
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 3.5e-51 207.2 299 43.5
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 4.6e-51 206.8 241 46.9
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 3.9e-50 203.8 304 41.8
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 6.6e-50 203.0 336 36.0
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.1e-49 202.2 343 35.3
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 1.1e-49 202.2 202 52.5
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 4.3e-49 200.3 323 42.1
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 5.6e-49 199.9 362 34.5
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 7.3e-49 199.5 379 33.2
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 1.3e-48 198.7 192 54.2
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 2.8e-48 197.6 192 52.6
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.8e-47 194.9 341 34.6
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 5.8e-46 189.9 239 43.1
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.1e-44 185.7 340 36.8
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 7.1e-44 183.0 236 42.8
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.3e-42 178.7 353 32.6
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 1.7e-42 178.3 234 41.9
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 3.9e-42 177.2 245 38.4
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 2.5e-41 174.5 185 48.6
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 8.1e-40 169.5 231 42.9
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 4.0e-39 167.2 192 46.9
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 5.3e-39 166.8 294 35.0
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 9.0e-39 166.0 313 38.0
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 9.0e-39 166.0 245 39.2
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.3e-37 162.2 307 35.8
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 6.4e-37 159.8 237 42.2
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 5.6e-33 146.7 290 33.8
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 1.0e-29 136.0 165 44.8
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 9.3e-28 129.4 119 54.6
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 1.2e-22 112.5 165 38.2
Atru.chr11.1056 Acer truncatum HOM05D007280 ORTHO05D009108 1.8e-15 88.6 66 62.1
Sp7g18820 Schrenkiella parvula HOM05D005973 ORTHO05D007285 1.5e-06 58.9 202 27.7
Nitab4.5_0005943g0060 Nicotiana tabacum HOM05D006842 ORTHO05D008908 7.7e-06 56.6 179 20.7


User provided reference genes

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