Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G13220 Arabidopsis thaliana HOM05D006285 ORTHO05D007249 3.0e-94 348.6 186 100.0
AL6G23830 Arabidopsis lyrata HOM05D006285 ORTHO05D007249 8.1e-84 313.9 186 90.3
Thhalv10014724m.g Eutrema salsugineum HOM05D006285 ORTHO05D007249 2.5e-77 292.4 187 85.6
Carub.0006s1139 Capsella rubella HOM05D006285 ORTHO05D007249 2.8e-76 288.9 193 86.0
A10p24990 Brassica napus HOM05D006285 ORTHO05D007249 1.9e-69 266.2 185 78.4
BolC2t06542H Brassica oleracea HOM05D006285 ORTHO05D007249 1.9e-69 266.2 185 77.8
BraA10t44561Z Brassica rapa HOM05D006285 ORTHO05D007249 1.9e-69 266.2 185 78.4
BraA02t05154Z Brassica rapa HOM05D006285 ORTHO05D007249 2.5e-69 265.8 186 77.4
A02p01780 Brassica napus HOM05D006285 ORTHO05D007249 4.3e-69 265.0 186 76.9
BcaNung01870 Brassica carinata HOM05D006285 ORTHO05D007249 5.7e-69 264.6 186 77.4
BcaNung01871 Brassica carinata HOM05D006285 ORTHO05D007249 5.7e-69 264.6 186 77.4
BcaC04g19135 Brassica carinata HOM05D006285 ORTHO05D007249 2.8e-68 262.3 185 77.8
BolC9t59226H Brassica oleracea HOM05D006285 ORTHO05D007249 4.8e-68 261.5 186 78.0
C02p05990 Brassica napus HOM05D006285 ORTHO05D007249 1.4e-67 260.0 185 76.8
C09p63860 Brassica napus HOM05D006285 ORTHO05D007249 1.8e-67 259.6 186 77.4
Sp6g30770 Schrenkiella parvula HOM05D006285 ORTHO05D007249 2.4e-67 259.2 185 77.3
BcaNung01167 Brassica carinata HOM05D006285 ORTHO05D007249 7.7e-66 254.2 186 76.3
C03p06880 Brassica napus HOM05D006285 ORTHO05D007249 2.7e-63 245.7 185 74.1
BolC3t13190H Brassica oleracea HOM05D006285 ORTHO05D007249 2.7e-63 245.7 185 74.1
A03p05870 Brassica napus HOM05D006285 ORTHO05D007249 1.8e-62 243.0 185 73.5
BraA03t09926Z Brassica rapa HOM05D006285 ORTHO05D007249 1.8e-62 243.0 185 73.5
Aa31LG3G14440 Aethionema arabicum HOM05D006285 ORTHO05D007249 1.1e-56 223.8 182 69.8
THA.LOC104803190 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 6.3e-52 208.0 199 60.3
THA.LOC104825472 Tarenaya hassleriana HOM05D006285 ORTHO05D007249 5.3e-51 204.9 199 60.3
CARHR200230 Cardamine hirsuta HOM05D006285 ORTHO05D007249 9.1e-51 204.1 175 70.3
QL03p050117 Quercus lobata HOM05D006285 ORTHO05D007249 5.2e-38 161.8 186 50.5
Ciclev10032858m.g Citrus clementina HOM05D006285 ORTHO05D007249 2.6e-37 159.5 185 54.6
Thecc.02G195800 Theobroma cacao HOM05D006285 ORTHO05D007249 5.7e-37 158.3 192 50.5
Gohir.D01G019500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 1.1e-35 154.1 195 52.8
Gorai.002G021800 Gossypium raimondii HOM05D006285 ORTHO05D007249 1.1e-35 154.1 195 52.8
Gorai.005G196200 Gossypium raimondii HOM05D006285 ORTHO05D007249 2.4e-35 152.9 193 50.3
Potri.003G165000 Populus trichocarpa HOM05D006285 ORTHO05D007249 2.4e-35 152.9 193 49.2
Potri.001G062500 Populus trichocarpa HOM05D006285 ORTHO05D007249 3.1e-35 152.5 191 49.7
Gohir.A03G151500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 3.5e-34 149.1 193 49.2
CANSAT01G0254 Cannabis sativa HOM05D006285 ORTHO05D007249 5.9e-34 148.3 191 48.2
Manes.09G186200 Manihot esculenta HOM05D006285 ORTHO05D007249 5.9e-34 148.3 193 48.7
Gohir.D02G174500 Gossypium hirsutum HOM05D006285 ORTHO05D007249 7.7e-34 147.9 193 49.2
Oeu044502.1 Olea europaea HOM05D006285 ORTHO05D007249 1.0e-33 147.5 188 52.7
COL.COLO4_20246 Corchorus olitorius HOM05D006285 ORTHO05D007249 1.7e-33 146.7 193 48.2
Duzib248G1203 Durio zibethinus HOM05D006285 ORTHO05D007249 1.5e-32 143.7 193 49.7
Sabra03G0120200 Salix brachista HOM05D006285 ORTHO05D007249 1.9e-32 143.3 208 44.2
Prupe.1G218500 Prunus persica HOM05D006285 ORTHO05D007249 2.5e-32 142.9 211 44.5
Sabra01G0044900 Salix brachista HOM05D006285 ORTHO05D007249 2.5e-32 142.9 191 47.1
BcaB01g05368 Brassica carinata HOM05D006285 ORTHO05D007249 3.2e-32 142.5 185 50.8
CiPaw.06G107800 Carya illinoinensis HOM05D006285 ORTHO05D007249 5.5e-32 141.7 191 47.6
GSVIVG01000967001 Vitis vinifera HOM05D006285 ORTHO05D007249 7.2e-32 141.4 192 46.9
Cfa009427 Carpinus fangiana HOM05D006285 ORTHO05D007249 8.0e-31 137.9 186 46.2
CiPaw.05G103600 Carya illinoinensis HOM05D006285 ORTHO05D007249 1.0e-30 137.5 192 46.4
Duzib052G0121 Durio zibethinus HOM05D006285 ORTHO05D007249 1.4e-30 137.1 191 46.6
PGR057G0008 Punica granatum HOM05D006285 ORTHO05D007249 1.4e-30 137.1 188 45.7
PGR119G0305 Punica granatum HOM05D006285 ORTHO05D007249 1.4e-30 137.1 188 45.7
TWI18G1468 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 6.8e-30 134.8 193 44.0
CSS0034430 Camellia sinensis var. sinensis HOM05D006285 ORTHO05D007249 8.8e-30 134.4 206 45.6
Haze_12478 Corylus avellana HOM05D006285 ORTHO05D007249 8.8e-30 134.4 186 45.7
TAR622G0521 Trochodendron aralioides HOM05D006285 ORTHO05D007249 8.8e-30 134.4 195 44.6
MD13G1127100 Malus domestica HOM05D006285 ORTHO05D007249 2.6e-29 132.9 199 45.2
Dinv19860 Davidia involucrata HOM05D006285 ORTHO05D007249 4.4e-29 132.1 196 45.4
ClCG06G001800 Citrullus lanatus HOM05D006285 ORTHO05D007249 9.8e-29 131.0 187 45.5
Actinidia34008 Actinidia chinensis HOM05D006285 ORTHO05D007249 1.3e-28 130.6 201 42.8
Cpa.g.sc207.10 Carica papaya HOM05D006285 ORTHO05D007249 1.3e-28 130.6 178 48.3
Actinidia09609 Actinidia chinensis HOM05D006285 ORTHO05D007249 2.2e-28 129.8 204 42.2
MELO3C022348.2 Cucumis melo HOM05D006285 ORTHO05D007249 8.3e-28 127.9 189 44.4
Rhsim12G0098900 Rhododendron simsii HOM05D006285 ORTHO05D007249 8.3e-28 127.9 194 44.3
Atru.chr11.2411 Acer truncatum HOM05D006285 ORTHO05D007249 1.4e-27 127.1 185 45.4
CsaV3_6G007840 Cucumis sativus L. HOM05D006285 ORTHO05D007249 7.0e-27 124.8 188 44.1
Actinidia22128 Actinidia chinensis HOM05D006285 ORTHO05D007249 1.2e-26 124.0 188 44.7
Manes.08G102800 Manihot esculenta HOM05D006285 ORTHO05D007249 2.7e-26 122.9 154 46.1
MD16G1127400 Malus domestica HOM05D006285 ORTHO05D007249 7.7e-26 121.3 201 43.8
Actinidia30601 Actinidia chinensis HOM05D006285 ORTHO05D007249 1.3e-25 120.6 186 42.5
Sed0027998 Sechium edule HOM05D006285 ORTHO05D007249 2.9e-25 119.4 186 44.6
TAR374G0139 Trochodendron aralioides HOM05D006285 ORTHO05D007249 8.6e-25 117.9 196 43.4
EL10Ac6g13588 Beta vulgaris HOM05D006285 ORTHO05D007249 4.2e-24 115.5 187 43.3
MSTRG.467 Avicennia marina HOM05D006285 ORTHO05D007249 2.1e-23 113.2 186 41.9
Gohir.A01G021000 Gossypium hirsutum HOM05D006285 ORTHO05D007249 6.1e-23 111.7 129 53.5
Oeu019430.1 Olea europaea HOM05D006285 ORTHO05D007249 8.0e-23 111.3 143 49.7
PGR102G0288 Punica granatum HOM05D006285 ORTHO05D007249 1.8e-22 110.2 190 41.6
MSTRG.8043 Avicennia marina HOM05D006285 ORTHO05D007249 8.9e-22 107.8 187 42.2
Peaxi162Scf00128g00175 Petunia axillaris HOM05D006285 ORTHO05D007249 2.0e-21 106.7 186 38.7
TWI36G1029 Tripterygium wilfordii HOM05D006285 ORTHO05D007249 2.0e-21 106.7 148 45.9
ATR0582G164 Amborella trichopoda HOM05D006285 ORTHO05D007249 5.7e-21 105.1 199 39.2
CDE06G1494 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 9.8e-21 104.4 187 39.0
Nn4g22189 Nelumbo nucifera HOM05D006285 ORTHO05D007249 2.2e-20 103.2 143 44.1
Aqoxy5G03206 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 8.3e-20 101.3 181 42.0
PSO478G0022 Papaver somniferum HOM05D006285 ORTHO05D007249 2.4e-19 99.8 210 37.1
Eucgr.G01954 Eucalyptus grandis HOM05D006285 ORTHO05D007249 3.1e-19 99.4 148 45.3
PGSC0003DMG400006480 Solanum tuberosum HOM05D006285 ORTHO05D007249 3.1e-19 99.4 186 38.7
PSO017G1512 Papaver somniferum HOM05D006285 ORTHO05D007249 5.4e-19 98.6 210 38.1
MELO3C017797.2 Cucumis melo HOM05D006285 ORTHO05D007249 7.0e-19 98.2 189 40.2
CsaV3_4G002460 Cucumis sativus L. HOM05D006285 ORTHO05D007249 1.6e-18 97.1 191 39.3
PSO732G0051 Papaver somniferum HOM05D006285 ORTHO05D007249 2.3e-17 93.2 194 36.6
PSO675G2785 Papaver somniferum HOM05D006285 ORTHO05D007249 1.5e-16 90.5 198 35.9
Lsat_1_v5_gn_3_31461 Lactuca sativa HOM05D006285 ORTHO05D007249 4.3e-16 89.0 182 41.2
Migut.K01038 Erythranthe guttata HOM05D006285 ORTHO05D007249 1.6e-15 87.0 181 38.1
Ah.03g135710 Amaranthus hybridus HOM05D000002 ORTHO05D000047 4.7e-15 85.5 134 41.8
FAN07G2449 Fragaria x ananassa HOM05D006285 ORTHO05D007249 8.0e-15 84.7 211 37.0
FAN12G2625 Fragaria x ananassa HOM05D006285 ORTHO05D007249 1.0e-14 84.3 213 35.7
FvH4_4g23000 Fragaria vesca HOM05D006285 ORTHO05D007249 5.2e-14 82.0 212 34.4
FAN17G1869 Fragaria x ananassa HOM05D006285 ORTHO05D007249 5.2e-14 82.0 211 35.5
MBI07_g36277_MAGBIO Magnolia biondii HOM05D006285 ORTHO05D007249 6.8e-14 81.6 192 35.4
SalBow2G0692 Salvia bowleyana HOM05D006285 ORTHO05D007249 8.9e-14 81.3 121 44.6
ECA233G3183 Erigeron canadensis HOM05D006285 ORTHO05D007249 1.5e-13 80.5 168 36.3
Nn3g16318 Nelumbo nucifera HOM05D006285 ORTHO05D007249 2.6e-13 79.7 171 33.3
Oeu055473.1 Olea europaea HOM05D006285 ORTHO05D007249 3.4e-13 79.3 186 33.9
Sc04g0010480 Simmondsia chinensis HOM05D006285 ORTHO05D007249 1.3e-12 77.4 156 37.2
HanXRQChr17g0540471 Helianthus annuus HOM05D006285 ORTHO05D007249 1.7e-12 77.0 180 33.3
RcHm_v2.0_Chr4g0429271 Rosa chinensis HOM05D006285 ORTHO05D007249 1.7e-12 77.0 200 37.0
HanXRQChr06g0175041 Helianthus annuus HOM05D006285 ORTHO05D007249 6.4e-12 75.1 152 38.2
Sc11g0000190 Simmondsia chinensis HOM05D006285 ORTHO05D007249 1.1e-11 74.3 136 39.0
HanXRQChr08g0210081 Helianthus annuus HOM05D006285 ORTHO05D007249 4.1e-11 72.4 159 37.1
Eucgr.B03545 Eucalyptus grandis HOM05D006285 ORTHO05D007249 5.4e-11 72.0 199 34.2
Rhsim12G0019500 Rhododendron simsii HOM05D006285 ORTHO05D007249 2.0e-10 70.1 153 35.3
ECA246G0706 Erigeron canadensis HOM05D006285 ORTHO05D007249 4.6e-10 68.9 209 30.6
CDE02G4729 Ceratophyllum demersum HOM05D006285 ORTHO05D007249 6.0e-10 68.6 132 36.4
CAN.G1179.3 Capsicum annuum HOM05D006285 ORTHO05D000105 3.0e-09 66.2 145 39.3
Aqoxy3G01789 Aquilegia oxysepala HOM05D006285 ORTHO05D007249 6.6e-09 65.1 117 42.7
AUR62028862 Chenopodium quinoa HOM05D006285 ORTHO05D007249 1.1e-08 64.3 104 42.3
Gohir.A05G034800 Gossypium hirsutum HOM05D001047 ORTHO05D000768 4.3e-08 62.4 110 42.7
HPP92_023090 Vanilla planifolia HOM05D006285 ORTHO05D007249 4.3e-08 62.4 188 31.4
Gohir.D05G036200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 7.3e-08 61.6 110 42.7
Gorai.009G036800 Gossypium raimondii HOM05D001047 ORTHO05D000768 7.3e-08 61.6 110 42.7
SEGI_20867 Sequoiadendron giganteum HOM05D006285 ORTHO05D007249 1.6e-07 60.5 143 34.3
ClCG07G011740 Citrullus lanatus HOM05D006285 ORTHO05D007249 3.6e-07 59.3 92 40.2
Sc18g0002760 Simmondsia chinensis HOM05D001047 ORTHO05D000768 4.7e-07 58.9 176 31.2
Lalb_Chr08g0232941 Lupinus albus HOM05D001047 ORTHO05D000768 8.0e-07 58.2 112 34.8
Os04g0395800 Oryza sativa ssp. japonica HOM05D006285 ORTHO05D007249 3.1e-06 56.2 85 43.5
DCAR_028473 Daucus carota HOM05D001047 ORTHO05D000768 4.0e-06 55.8 82 43.9
PGR142G0888 Punica granatum HOM05D001047 ORTHO05D000768 4.0e-06 55.8 107 39.3
Glyma.09G077500 Glycine max HOM05D001047 ORTHO05D000768 5.2e-06 55.5 116 35.3
Sopen01g005240 Solanum pennellii HOM05D015436 ORTHO05D018126 5.2e-06 55.5 83 43.4
AUR62005696 Chenopodium quinoa HOM05D006285 ORTHO05D007249 6.8e-06 55.1 167 31.7
Glyma.15G184900 Glycine max HOM05D001047 ORTHO05D000768 6.8e-06 55.1 116 35.3
Phvul.009G221800 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 8.9e-06 54.7 115 35.7
vmacro17112 Vaccinium macrocarpon HOM05D001047 ORTHO05D000768 8.9e-06 54.7 206 27.7
VMungo1309G1373 Vigna mungo HOM05D001047 ORTHO05D000768 8.9e-06 54.7 122 35.2


User provided reference genes

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