Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G13030 Arabidopsis thaliana HOM05D004119 ORTHO05D004797 0.0e+00 1286.9 634 100.0
Carub.0006s1120 Capsella rubella HOM05D004119 ORTHO05D004797 0.0e+00 1245.0 634 96.1
Thhalv10012956m.g Eutrema salsugineum HOM05D004119 ORTHO05D004797 0.0e+00 1226.5 635 95.1
CARHR200430 Cardamine hirsuta HOM05D004119 ORTHO05D004797 0.0e+00 1212.6 634 94.0
Sp6g30940 Schrenkiella parvula HOM05D004119 ORTHO05D004797 0.0e+00 1194.9 635 92.4
AL6G23620 Arabidopsis lyrata HOM05D004119 ORTHO05D004797 0.0e+00 1176.0 586 98.3
C09p64070 Brassica napus HOM05D004119 ORTHO05D004797 0.0e+00 1157.5 639 90.1
BolC9t59244H Brassica oleracea HOM05D004119 ORTHO05D004797 0.0e+00 1151.0 639 89.7
BraA10t44578Z Brassica rapa HOM05D004119 ORTHO05D004797 0.0e+00 1129.0 643 88.2
A10p25160 Brassica napus HOM05D004119 ORTHO05D004797 0.0e+00 1128.2 643 88.2
Aa31LG3G14630 Aethionema arabicum HOM05D004119 ORTHO05D004797 0.0e+00 1122.5 643 87.7
C03p06720 Brassica napus HOM05D004119 ORTHO05D004797 0.0e+00 1089.3 642 84.7
BraA03t09916Z Brassica rapa HOM05D004119 ORTHO05D004797 0.0e+00 1088.9 638 85.1
THA.LOC104811125 Tarenaya hassleriana HOM05D004119 ORTHO05D004797 0.0e+00 1088.2 642 83.3
A03p05770 Brassica napus HOM05D004119 ORTHO05D004797 0.0e+00 1084.7 638 85.0
BolC3t13178H Brassica oleracea HOM05D004119 ORTHO05D004797 0.0e+00 1080.9 641 84.4
BcaB01g05381 Brassica carinata HOM05D004119 ORTHO05D004797 7.6e-307 1056.6 639 82.8
Atru.chr3.2434 Acer truncatum HOM05D004119 ORTHO05D004797 6.0e-288 993.8 637 77.7
Atru.chr3.2433 Acer truncatum HOM05D004119 ORTHO05D004797 1.0e-287 993.0 637 77.6
CANSAT54G1702 Cannabis sativa HOM05D004119 ORTHO05D004797 5.6e-286 987.3 616 78.2
Dinv36315 Davidia involucrata HOM05D004119 ORTHO05D004797 5.6e-286 987.3 638 76.6
TWI60G0817 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 2.8e-285 984.9 635 77.0
CiPaw.14G126500 Carya illinoinensis HOM05D004119 ORTHO05D004797 4.8e-285 984.2 582 81.3
CsaV3_1G042400 Cucumis sativus L. HOM05D004119 ORTHO05D004797 1.2e-283 979.5 609 77.8
Potri.001G013900 Populus trichocarpa HOM05D004119 ORTHO05D004797 1.5e-283 979.2 641 75.2
GSVIVG01025352001 Vitis vinifera HOM05D004119 ORTHO05D004797 1.5e-283 979.2 630 75.9
Manes.14G015300 Manihot esculenta HOM05D004119 ORTHO05D004797 2.0e-283 978.8 586 80.7
Sabra01G0010200 Salix brachista HOM05D004119 ORTHO05D004797 9.9e-283 976.5 620 76.3
ClCG03G013650 Citrullus lanatus HOM05D004119 ORTHO05D004797 1.3e-282 976.1 602 77.7
QL01p009105 Quercus lobata HOM05D004119 ORTHO05D004797 1.3e-282 976.1 642 75.4
TWI32G0563 Tripterygium wilfordii HOM05D004119 ORTHO05D004797 1.3e-282 976.1 638 76.0
Cpa.g.sc117.3 Carica papaya HOM05D004119 ORTHO05D004797 2.2e-282 975.3 630 76.3
Ciclev10014571m.g Citrus clementina HOM05D004119 ORTHO05D004797 2.9e-282 974.9 618 78.0
Hma1.2p1_1169F.1_g263240 Hydrangea macrophylla HOM05D004119 ORTHO05D004797 1.1e-281 973.0 658 72.3
MELO3C015675.2 Cucumis melo HOM05D004119 ORTHO05D004797 1.4e-281 972.6 609 77.5
PGR119G0026 Punica granatum HOM05D004119 ORTHO05D004797 3.2e-281 971.5 573 80.5
MD03G1018700 Malus domestica HOM05D004119 ORTHO05D004797 7.1e-281 970.3 629 75.7
FAN25G0197 Fragaria x ananassa HOM05D004119 ORTHO05D004797 1.6e-280 969.1 634 74.8
Thecc.09G219300 Theobroma cacao HOM05D004119 ORTHO05D004797 1.6e-280 969.1 621 76.8
Prupe.6G017800 Prunus persica HOM05D004119 ORTHO05D004797 3.5e-280 968.0 625 75.7
COL.COLO4_10388 Corchorus olitorius HOM05D004119 ORTHO05D004797 2.3e-279 965.3 584 80.1
FAN11G1732 Fragaria x ananassa HOM05D004119 ORTHO05D004797 3.9e-279 964.5 610 76.2
FvH4_3g43840 Fragaria vesca HOM05D004119 ORTHO05D004797 5.1e-279 964.1 634 74.0
Duzib168G2002 Durio zibethinus HOM05D004119 ORTHO05D004797 8.7e-279 963.4 630 75.7
CiPaw.13G168300 Carya illinoinensis HOM05D004119 ORTHO05D004797 1.1e-278 963.0 579 79.4
RcHm_v2.0_Chr5g0079321 Rosa chinensis HOM05D004119 ORTHO05D004797 1.1e-278 963.0 611 75.6
DCAR_002029 Daucus carota HOM05D004119 ORTHO05D004797 3.3e-278 961.4 566 80.2
Cc01_g03810 Coffea canephora HOM05D004119 ORTHO05D004797 7.4e-278 960.3 582 78.2
CSS0046641 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 2.1e-277 958.7 639 74.6
MD11G1020700 Malus domestica HOM05D004119 ORTHO05D004797 2.1e-277 958.7 618 75.9
Eucgr.B02600 Eucalyptus grandis HOM05D004119 ORTHO05D004797 4.8e-277 957.6 583 78.6
Peaxi162Scf00403g00212 Petunia axillaris HOM05D004119 ORTHO05D004797 3.1e-276 954.9 610 75.4
Sed0015121 Sechium edule HOM05D004119 ORTHO05D004797 6.9e-276 953.7 588 77.6
Aqoxy2G00086 Aquilegia oxysepala HOM05D004119 ORTHO05D004797 4.5e-275 951.0 570 79.1
Haze_23030 Corylus avellana HOM05D004119 ORTHO05D004797 4.5e-275 951.0 689 70.1
PSO384G1641 Papaver somniferum HOM05D004119 ORTHO05D004797 4.5e-275 951.0 589 76.6
Nitab4.5_0001568g0150 Nicotiana tabacum HOM05D004119 ORTHO05D004797 5.8e-275 950.7 637 73.9
SGA_v2.0_scaffold3G01554 Striga asiatica HOM05D004119 ORTHO05D004797 1.7e-274 949.1 639 73.1
SalBow2G0171 Salvia bowleyana HOM05D004119 ORTHO05D004797 2.2e-274 948.7 654 71.6
Sopen01g002470 Solanum pennellii HOM05D004119 ORTHO05D004797 6.5e-274 947.2 569 78.4
Lalb_Chr02g0144391 Lupinus albus HOM05D004119 ORTHO05D004797 1.4e-273 946.0 570 79.3
Oeu043306.1 Olea europaea HOM05D004119 ORTHO05D004797 1.9e-273 945.7 585 77.4
PSO339G4050 Papaver somniferum HOM05D004119 ORTHO05D004797 1.9e-273 945.7 589 76.1
Gorai.004G018600 Gossypium raimondii HOM05D004119 ORTHO05D004797 4.2e-273 944.5 632 74.2
Migut.N02286 Erythranthe guttata HOM05D004119 ORTHO05D004797 1.6e-272 942.6 621 73.6
Gohir.A08G012900 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.1e-272 942.2 622 74.6
Gohir.D08G023300 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.1e-272 942.2 632 74.1
Lsat_1_v5_gn_6_49801 Lactuca sativa HOM05D004119 ORTHO05D004797 2.7e-272 941.8 605 74.4
MSTRG.12487 Avicennia marina HOM05D004119 ORTHO05D004797 4.6e-272 941.0 642 72.3
AUR62019225 Chenopodium quinoa HOM05D004119 ORTHO05D004797 4.6e-272 941.0 570 78.4
Nn2g15648 Nelumbo nucifera HOM05D004119 ORTHO05D004797 6.0e-272 940.6 587 77.2
Solyc01g006490.4 Solanum lycopersicum HOM05D004119 ORTHO05D004797 7.9e-272 940.3 618 73.6
Nitab4.5_0004389g0050 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.0e-271 939.9 619 72.7
Phvul.007G003400 Phaseolus vulgaris HOM05D004119 ORTHO05D004797 3.0e-271 938.3 570 77.9
AUR62000053 Chenopodium quinoa HOM05D004119 ORTHO05D004797 3.9e-271 937.9 570 78.6
CAN.G649.14 Capsicum annuum HOM05D004119 ORTHO05D004797 5.1e-271 937.6 617 73.6
Peaxi162Scf00062g01417 Petunia axillaris HOM05D004119 ORTHO05D004797 6.7e-271 937.2 621 72.5
Sed0006721 Sechium edule HOM05D004119 ORTHO05D004797 6.7e-271 937.2 578 77.3
VMungo0720G1960 Vigna mungo HOM05D004119 ORTHO05D004797 8.7e-271 936.8 570 77.5
PGSC0003DMG400032205 Solanum tuberosum HOM05D004119 ORTHO05D004797 1.5e-270 936.0 569 77.9
Gohir.D05G069700 Gossypium hirsutum HOM05D004119 ORTHO05D004797 2.5e-270 935.3 582 76.6
Gohir.A05G066800 Gossypium hirsutum HOM05D004119 ORTHO05D004797 4.3e-270 934.5 582 77.0
FAN21G0229 Fragaria x ananassa HOM05D004119 ORTHO05D004797 5.7e-270 934.1 625 73.9
MSTRG.18400 Avicennia marina HOM05D004119 ORTHO05D004797 9.7e-270 933.3 584 76.7
ATR0605G198 Amborella trichopoda HOM05D004119 ORTHO05D004797 1.6e-269 932.6 547 80.3
Lalb_Chr21g0307631 Lupinus albus HOM05D004119 ORTHO05D004797 2.2e-269 932.2 605 74.9
Gorai.009G070700 Gossypium raimondii HOM05D004119 ORTHO05D004797 1.1e-268 929.9 582 76.5
Lj5g0022671 Lotus japonicus HOM05D004119 ORTHO05D004797 1.1e-268 929.9 571 77.2
Oeu055814.1 Olea europaea HOM05D004119 ORTHO05D004797 2.4e-268 928.7 588 76.7
HanXRQChr02g0056721 Helianthus annuus HOM05D004119 ORTHO05D004797 5.3e-268 927.5 547 79.0
ECA233G2530 Erigeron canadensis HOM05D004119 ORTHO05D004797 7.7e-267 923.7 563 77.6
Glyma.20G246800 Glycine max HOM05D004119 ORTHO05D004797 1.3e-266 922.9 543 80.3
HanXRQChr11g0345481 Helianthus annuus HOM05D004119 ORTHO05D004797 1.3e-266 922.9 579 74.6
Medtr1g116875 Medicago truncatula HOM05D004119 ORTHO05D004797 1.1e-265 919.8 602 74.3
Nitab4.5_0001146g0130 Nicotiana tabacum HOM05D004119 ORTHO05D004797 1.1e-265 919.8 637 72.2
vmacro12703 Vaccinium macrocarpon HOM05D004119 ORTHO05D004797 1.4e-265 919.5 528 82.0
Ca_11408_v3 Cicer arietinum L. HOM05D004119 ORTHO05D004797 3.2e-265 918.3 564 77.3
ECA248G2677 Erigeron canadensis HOM05D004119 ORTHO05D004797 6.1e-264 914.1 586 74.4
HanXRQChr13g0404241 Helianthus annuus HOM05D004119 ORTHO05D004797 1.8e-263 912.5 619 71.7
Psat6g242880 Pisum sativum HOM05D004119 ORTHO05D004797 2.3e-263 912.1 604 73.5
Lj1C433G5 Lonicera japonica HOM05D004119 ORTHO05D004797 8.8e-263 910.2 612 73.5
TPR.G8893 Trifolium pratense HOM05D004119 ORTHO05D004797 4.3e-262 907.9 531 80.4
Solyc12g100200.2 Solanum lycopersicum HOM05D004119 ORTHO05D004797 8.2e-261 903.7 616 71.3
Os06g0320700 Oryza sativa ssp. japonica HOM05D004119 ORTHO05D004797 1.1e-260 903.3 546 76.9
Sopen12g034830 Solanum pennellii HOM05D004119 ORTHO05D004797 4.1e-260 901.4 616 71.4
Rhsim01G0187100 Rhododendron simsii HOM05D004119 ORTHO05D004797 5.0e-258 894.4 698 65.0
Lsat_1_v5_gn_1_68000 Lactuca sativa HOM05D004119 ORTHO05D004797 7.4e-254 880.6 575 74.1
CAN.G575.41 Capsicum annuum HOM05D004119 ORTHO05D004797 1.7e-253 879.4 627 68.4
CDE04G3728 Ceratophyllum demersum HOM05D004119 ORTHO05D004797 3.1e-252 875.2 532 77.1
HPP92_018953 Vanilla planifolia HOM05D004119 ORTHO05D004797 1.3e-250 869.8 638 67.7
SEGI_31462 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 7.7e-243 844.0 634 66.4
Lj2C671G7 Lonicera japonica HOM05D004119 ORTHO05D004797 1.1e-241 840.1 578 71.5
Actinidia06316 Actinidia chinensis HOM05D004119 ORTHO05D004797 5.3e-236 821.2 600 68.7
Hund21812 Selenicereus undatus HOM05D004119 ORTHO05D004797 2.9e-234 815.5 509 77.6
Pp3c9_22190 Physcomitrium patens HOM05D004119 ORTHO05D004797 1.2e-230 803.5 573 66.1
Mapoly0063s0012 Marchantia polymorpha HOM05D004119 ORTHO05D004797 3.4e-230 802.0 587 65.4
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 1.1e-228 797.0 570 70.0
AagrBONN_evm.TU.Sc2ySwM_344.3798 Anthoceros agrestis HOM05D004119 ORTHO05D004797 3.5e-227 792.0 549 68.7
Sc16g0011910 Simmondsia chinensis HOM05D004119 ORTHO05D004797 3.5e-227 792.0 448 83.7
Lj1A436T13 Lonicera japonica HOM05D004119 ORTHO05D004797 9.5e-225 783.9 448 82.1
MBI04_g46409_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 5.2e-223 778.1 548 70.1
FAN16G3698 Fragaria x ananassa HOM05D004119 ORTHO05D004797 7.0e-220 767.7 439 82.2
SMO134G0253 Selaginella moellendorffii HOM05D004119 ORTHO05D004797 4.3e-209 731.9 517 68.9
TAR623G1465 Trochodendron aralioides HOM05D004119 ORTHO05D004797 2.9e-189 666.0 552 63.6
SEGI_38661 Sequoiadendron giganteum HOM05D004119 ORTHO05D004797 8.4e-189 664.5 452 69.7
CBR_g38091 Chara braunii HOM05D004119 ORTHO05D004797 8.1e-184 647.9 538 59.1
Zm00001eb381770 Zea mays HOM05D004119 ORTHO05D004797 5.4e-172 608.6 361 78.9
PGR119G0420 Punica granatum HOM05D004119 ORTHO05D004797 5.1e-162 575.5 344 79.4
Nn7g36025 Nelumbo nucifera HOM05D004119 ORTHO05D004797 1.4e-148 530.8 586 50.9
Cre16.g648900 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.3e-144 517.7 567 47.6
EL10Ac4g10322 Beta vulgaris HOM05D004119 ORTHO05D004797 4.8e-144 515.8 364 72.3
Dinv08059 Davidia involucrata HOM05D004119 ORTHO05D004797 7.7e-142 508.4 539 54.2
Oeu024459.1 Olea europaea HOM05D004119 ORTHO05D004797 3.6e-139 499.6 417 62.6
CSS0049397 Camellia sinensis var. sinensis HOM05D004119 ORTHO05D004797 1.7e-136 490.7 278 82.4
arahy.Tifrunner.gnm1.ann1.ZPWD91 Arachis hypogaea HOM05D004119 ORTHO05D004797 8.5e-133 478.4 280 78.2
arahy.Tifrunner.gnm1.ann1.J6MIXF Arachis hypogaea HOM05D004119 ORTHO05D004797 6.1e-131 472.2 318 75.8
PRCOL_00001378 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.8e-111 407.5 573 41.2
Psat3g017080 Pisum sativum HOM05D004119 ORTHO05D004797 3.7e-104 383.3 287 63.8
Cre02.g108250 Chlamydomonas reinhardtii HOM05D004119 ORTHO05D004797 1.1e-92 345.1 645 35.7
RcHm_v2.0_Chr5g0079021 Rosa chinensis HOM05D004119 ORTHO05D004797 9.8e-89 332.0 184 83.2
FvH4_3g45150 Fragaria vesca HOM05D004119 ORTHO05D004797 6.4e-88 329.3 263 66.2
Pp3s34_210 Physcomitrium patens HOM05D000198 ORTHO05D004797 2.1e-78 297.7 497 36.4
Cfa025573 Carpinus fangiana HOM05D004119 ORTHO05D004797 3.5e-78 297.0 593 34.9
TAR369G0071 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.9e-77 293.5 179 77.7
Glyma.10G296266 Glycine max HOM05D004119 ORTHO05D004797 5.1e-77 293.1 188 73.4
RcHm_v2.0_Chr5g0079011 Rosa chinensis HOM05D004119 ORTHO05D004797 2.5e-76 290.8 179 75.4
Lj1P432T25 Lonicera japonica HOM05D004119 ORTHO05D004797 8.1e-75 285.8 164 82.3
PRCOL_00005150 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.2e-73 282.0 585 33.0
MCO09G196 Micromonas commoda HOM05D004119 ORTHO05D004797 3.5e-70 270.4 609 34.0
TAR369G0199 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.4e-65 253.8 140 84.3
Actinidia39374 Actinidia chinensis HOM05D004119 ORTHO05D004797 4.6e-62 243.4 321 43.9
Psat3g137640 Pisum sativum HOM05D004119 ORTHO05D004797 1.5e-60 238.4 159 69.8
PRCOL_00005494 Prasinoderma coloniale HOM05D004119 ORTHO05D004797 1.3e-59 235.3 596 30.7
TAR362G0095 Trochodendron aralioides HOM05D004119 ORTHO05D004797 6.9e-50 203.0 117 80.3
MD11G1020000 Malus domestica HOM05D004119 ORTHO05D004797 5.5e-47 193.4 120 80.0
Manes.06G169401 Manihot esculenta HOM05D004119 ORTHO05D004797 3.3e-44 184.1 107 81.3
Ca_11410_v3 Cicer arietinum L. HOM05D004698 ORTHO05D005699 2.1e-43 181.4 106 80.2
VMungo0720G3038 Vigna mungo HOM05D004119 ORTHO05D004797 5.0e-40 170.2 155 56.1
TAR362G1239 Trochodendron aralioides HOM05D004119 ORTHO05D004797 4.8e-35 153.7 114 64.9
Lj1A436G11 Lonicera japonica HOM05D004119 ORTHO05D004797 2.1e-30 138.3 93 73.1
TAR369G0705 Trochodendron aralioides HOM05D004119 ORTHO05D004797 3.0e-29 134.4 105 64.8
MBI04_g37845_MAGBIO Magnolia biondii HOM05D004119 ORTHO05D004797 4.3e-28 130.6 65 92.3
TPR.G14880 Trifolium pratense HOM05D004119 ORTHO05D004797 7.4e-28 129.8 77 74.0
Hund21661 Selenicereus undatus HOM05D002401 ORTHO05D007109 6.3e-27 126.7 67 82.1
Lsat_1_v5_gn_4_11801 Lactuca sativa HOM05D004119 ORTHO05D004797 4.5e-25 120.6 137 46.7
BraA01t00507Z Brassica rapa HOM05D004119 ORTHO05D004797 1.5e-20 105.5 72 79.2
RcHm_v2.0_Chr5g0079031 Rosa chinensis HOM05D004119 ORTHO05D004797 4.8e-19 100.5 64 75.0
RcHm_v2.0_Chr5g0079041 Rosa chinensis HOM05D004119 ORTHO05D004797 8.2e-11 73.2 66 54.5
TAR633G0263 Trochodendron aralioides HOM05D004119 ORTHO05D004797 9.1e-10 69.7 54 63.0
TPR.G25082 Trifolium pratense HOM05D004119 ORTHO05D004797 1.2e-09 69.3 78 52.6
Actinidia39373 Actinidia chinensis HOM05D004119 ORTHO05D004797 3.5e-09 67.8 60 60.0
HanXRQChr13g0426091 Helianthus annuus HOM05D004119 ORTHO05D004797 1.7e-08 65.5 38 76.3


User provided reference genes

Program Settings