Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 1.2e-302 1042.3 525 100.0
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 2.7e-257 891.7 486 92.6
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 1.1e-234 816.6 477 86.4
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 1.7e-227 792.7 479 83.3
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 2.9e-227 792.0 478 83.1
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 1.6e-225 786.2 481 83.2
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 5.8e-220 767.7 484 80.8
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 2.9e-219 765.4 519 76.5
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 6.4e-219 764.2 495 79.8
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 5.4e-218 761.1 529 75.4
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 3.0e-208 728.8 468 79.9
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 8.7e-192 674.1 466 70.6
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 4.1e-181 638.6 473 67.0
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 1.8e-149 533.5 479 56.8
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 2.0e-148 530.0 474 55.7
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 5.6e-146 521.9 474 54.9
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 5.6e-146 521.9 469 55.7
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 9.5e-146 521.2 475 54.9
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 3.6e-145 519.2 470 54.9
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 8.0e-145 518.1 474 54.4
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 2.3e-144 516.5 470 54.7
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 2.6e-143 513.1 471 54.4
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 5.7e-143 511.9 475 55.2
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 9.8e-143 511.1 474 54.9
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.3e-142 510.8 467 54.4
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 1.0e-139 501.1 469 53.5
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.7e-139 500.4 469 53.3
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 6.2e-137 491.9 493 51.3
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 9.8e-135 484.6 481 53.0
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 2.2e-134 483.4 491 49.3
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 2.4e-133 479.9 478 49.6
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 3.2e-133 479.6 463 52.1
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 4.1e-133 479.2 467 51.2
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 7.0e-133 478.4 468 51.1
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 1.6e-132 477.2 479 51.4
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 6.0e-132 475.3 464 50.6
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 1.3e-131 474.2 476 51.5
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 1.3e-131 474.2 477 53.2
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 1.7e-131 473.8 476 51.5
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.7e-131 473.8 478 50.8
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 2.3e-131 473.4 470 51.3
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 5.0e-131 472.2 494 48.6
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 8.6e-131 471.5 490 51.6
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 1.1e-130 471.1 474 51.9
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 1.9e-130 470.3 476 52.3
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 4.3e-130 469.2 446 53.1
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 1.2e-129 467.6 478 50.4
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 1.1e-128 464.5 488 49.8
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 1.1e-128 464.5 470 48.9
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 2.0e-127 460.3 471 51.6
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 5.8e-127 458.8 479 47.8
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 7.5e-127 458.4 471 48.2
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 5.4e-125 452.2 487 48.7
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 6.0e-124 448.7 456 48.2
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 1.3e-123 447.6 478 50.0
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 3.9e-123 446.0 469 49.3
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 4.3e-122 442.6 518 45.8
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 2.8e-121 439.9 469 48.4
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 6.2e-121 438.7 478 48.7
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 1.4e-120 437.6 481 47.6
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 2.2e-118 430.3 380 55.3
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 1.1e-117 427.9 486 47.9
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 1.7e-115 420.6 526 44.9
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 3.9e-115 419.5 484 46.3
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 9.6e-114 414.8 457 48.4
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 2.8e-113 413.3 386 53.6
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 3.6e-113 412.9 476 46.2
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 6.2e-113 412.1 507 42.2
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 2.4e-109 400.2 479 45.5
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 2.7e-108 396.7 481 46.4
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 4.6e-108 396.0 467 45.2
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 1.5e-106 391.0 386 49.2
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 1.5e-106 391.0 520 42.5
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 3.3e-106 389.8 485 46.6
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 9.0e-104 381.7 567 39.7
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 9.0e-104 381.7 383 51.2
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 1.2e-103 381.3 387 50.1
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 1.6e-100 370.9 438 46.6
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 3.5e-100 369.8 507 39.8
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 1.3e-99 367.9 450 44.4
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.8e-99 367.5 468 43.4
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 1.5e-98 364.4 473 44.6
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.5e-98 363.6 480 42.9
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 2.3e-91 340.5 329 48.9
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 2.8e-89 333.6 500 39.4
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 2.6e-87 327.0 480 37.9
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 2.9e-86 323.6 322 50.9
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 5.5e-85 319.3 326 46.0
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 9.0e-80 302.0 477 36.9
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 1.2e-76 291.6 257 55.3
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 5.0e-70 269.6 484 34.3
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 9.4e-69 265.4 289 45.3
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 1.0e-67 261.9 325 46.5
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.7e-65 254.6 290 43.4
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 8.2e-65 252.3 287 44.3
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 2.5e-61 240.7 516 31.8
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 4.7e-60 236.5 278 42.1
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 8.2e-57 225.7 194 57.7
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 2.1e-52 211.1 172 61.0
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 9.7e-50 202.2 304 37.8
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 5.3e-48 196.4 471 29.7
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 1.7e-46 191.4 157 58.6
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 2.9e-46 190.7 231 44.6
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 7.2e-45 186.0 190 45.3
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 9.8e-42 175.6 189 47.6
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 1.3e-41 175.3 194 47.4
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 7.3e-29 132.9 130 49.2
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 9.5e-29 132.5 164 45.1
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.0e-27 129.0 355 26.8
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 1.7e-25 121.7 191 37.2
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 3.9e-22 110.5 90 58.9
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 5.6e-21 106.7 91 58.2
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 2.6e-18 97.8 281 32.0
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 4.9e-17 93.6 150 40.7
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 2.0e-15 88.2 135 39.3
MCO05G648 Micromonas commoda HOM05D006389 ORTHO05D007863 2.7e-15 87.8 367 27.2
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 3.3e-13 80.9 53 66.0
vmacro04177 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 2.7e-07 61.2 72 40.3
SEGI_20259 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 3.5e-07 60.8 71 40.8
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 4.6e-07 60.5 88 37.5


User provided reference genes

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