Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 8.4e-162 573.5 274 100.0
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 3.4e-147 525.0 274 92.0
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 6.5e-138 494.2 275 86.5
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 2.9e-130 468.8 275 83.3
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 1.1e-124 450.3 277 81.6
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 1.1e-118 430.3 275 77.8
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 1.7e-117 426.4 280 77.9
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 3.7e-117 425.2 280 77.5
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 3.7e-117 425.2 280 77.5
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 3.1e-116 422.2 280 77.1
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 3.1e-116 422.2 280 77.1
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 4.5e-115 418.3 279 76.0
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 1.2e-99 367.1 283 66.8
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 4.3e-89 332.0 276 62.7
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 2.3e-58 229.9 269 47.2
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 2.5e-57 226.5 277 47.3
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 9.0e-55 218.0 266 47.0
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 4.4e-54 215.7 267 44.2
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 5.8e-54 215.3 273 44.7
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 9.9e-54 214.5 264 45.8
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 1.3e-53 214.2 239 47.7
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 1.7e-53 213.8 262 48.9
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 1.7e-53 213.8 240 45.4
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 2.2e-53 213.4 271 46.5
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 2.9e-53 213.0 261 48.3
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 1.1e-52 211.1 239 46.9
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 1.4e-52 210.7 268 43.3
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 1.9e-52 210.3 273 45.1
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 1.9e-52 210.3 260 45.4
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 1.9e-52 210.3 277 44.4
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 3.2e-52 209.5 252 46.0
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 4.2e-52 209.1 274 46.0
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 4.2e-52 209.1 244 46.7
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 7.1e-52 208.4 261 47.1
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 9.3e-52 208.0 271 43.2
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 9.3e-52 208.0 270 46.3
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 1.6e-51 207.2 268 45.5
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 1.6e-51 207.2 278 45.3
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 2.1e-51 206.8 270 44.1
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 2.7e-51 206.5 260 44.6
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 3.5e-51 206.1 247 47.4
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 3.5e-51 206.1 239 45.6
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 7.8e-51 204.9 262 46.6
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 7.8e-51 204.9 251 45.4
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 1.0e-50 204.5 280 45.7
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 1.3e-50 204.1 271 43.5
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 1.7e-50 203.8 239 46.9
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 1.7e-50 203.8 276 44.6
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 5.1e-50 202.2 260 44.6
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 8.7e-50 201.4 242 45.5
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 8.7e-50 201.4 264 42.0
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 1.1e-49 201.1 261 44.1
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 1.5e-49 200.7 262 45.0
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 1.9e-49 200.3 278 42.8
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 7.3e-49 198.4 243 44.9
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 7.3e-49 198.4 270 43.3
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 9.6e-49 198.0 243 44.9
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 1.3e-48 197.6 239 44.8
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 2.1e-48 196.8 243 44.4
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 3.6e-48 196.1 261 43.7
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 4.8e-48 195.7 261 42.9
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 4.8e-48 195.7 275 43.3
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 1.8e-47 193.7 259 40.9
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 4.0e-47 192.6 269 43.1
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 5.3e-47 192.2 262 40.1
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 5.3e-47 192.2 267 42.7
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 5.3e-47 192.2 266 41.7
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 9.0e-47 191.4 249 43.4
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 2.0e-46 190.3 267 44.2
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 2.6e-46 189.9 236 43.2
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 3.4e-46 189.5 235 44.7
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 4.5e-46 189.1 238 43.7
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 5.8e-46 188.7 276 43.1
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 3.8e-45 186.0 241 46.1
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 1.1e-44 184.5 258 42.2
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 1.4e-44 184.1 250 39.6
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 9.3e-44 181.4 260 40.4
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 1.2e-43 181.0 260 41.9
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 1.6e-43 180.6 262 41.6
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.1e-43 180.3 235 41.7
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 4.6e-43 179.1 243 41.6
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 6.7e-42 175.3 243 41.2
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 1.9e-41 173.7 238 41.2
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.9e-41 173.7 238 40.8
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 7.4e-41 171.8 238 42.0
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 7.4e-41 171.8 239 39.3
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 9.6e-41 171.4 235 42.1
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 3.7e-40 169.5 243 40.3
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 8.1e-40 168.3 276 39.5
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 3.1e-39 166.4 238 40.8
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 2.6e-38 163.3 231 40.7
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 2.9e-37 159.8 249 39.0
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 2.3e-34 150.2 237 39.2
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 3.0e-34 149.8 238 38.2
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 3.9e-34 149.4 234 37.6
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 1.1e-33 147.9 234 36.8
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 1.5e-33 147.5 234 36.8
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 1.5e-33 147.5 122 60.7
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 2.8e-32 143.3 225 38.2
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 3.7e-32 142.9 165 51.5
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 4.8e-32 142.5 238 37.0
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 6.2e-32 142.1 235 35.3
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 8.2e-32 141.7 241 34.4
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 1.1e-31 141.4 256 37.1
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 5.3e-31 139.0 234 35.5
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 2.6e-30 136.7 215 43.7
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 1.7e-29 134.0 136 53.7
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 1.7e-29 134.0 111 59.5
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 8.4e-29 131.7 143 52.4
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 1.4e-28 131.0 239 36.0
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 9.3e-28 128.3 185 41.1
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 1.1e-25 121.3 158 47.5
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.9e-25 120.6 241 34.0
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 1.6e-24 117.5 264 34.8
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 3.7e-24 116.3 214 36.9
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 8.2e-24 115.2 234 32.9
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 2.0e-22 110.5 178 39.3
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.6e-22 110.2 234 32.5
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 1.0e-21 108.2 253 32.0
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 6.5e-21 105.5 253 30.8
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 1.6e-19 100.9 242 31.8
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 1.0e-18 98.2 257 31.9
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 8.8e-18 95.1 236 33.5
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 2.8e-16 90.1 225 34.2
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 3.4e-14 83.2 225 32.0
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 4.5e-14 82.8 141 34.0
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 1.7e-13 80.9 274 28.5
A02p01110 Brassica napus HOM05D005944 ORTHO05D007188 4.4e-09 66.2 33 90.9
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 1.4e-07 61.2 60 46.7
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 1.2e-06 58.2 41 48.8


User provided reference genes

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