Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G08600 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 0.0e+00 1569.3 846 100.0
AL6G19330 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 0.0e+00 1137.1 840 75.8
Carub.0006s0757 Capsella rubella HOM05D000880 ORTHO05D004760 0.0e+00 1106.7 839 74.0
Sp6g02280 Schrenkiella parvula HOM05D000880 ORTHO05D004760 5.7e-310 1067.4 876 70.4
Thhalv10028424m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 5.0e-306 1054.3 868 68.1
AT4G02400 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 3.1e-300 1035.0 855 70.4
AL6G50720 Arabidopsis lyrata HOM05D000880 ORTHO05D004760 2.0e-299 1032.3 863 68.6
Carub.0006s3476 Capsella rubella HOM05D000880 ORTHO05D004760 2.3e-298 1028.9 856 70.6
Aa31LG5G2040 Aethionema arabicum HOM05D000880 ORTHO05D004760 2.1e-296 1022.3 885 67.5
BolC2t09905H Brassica oleracea HOM05D000880 ORTHO05D004760 6.1e-296 1020.8 880 67.7
BcaC03g16120 Brassica carinata HOM05D000880 ORTHO05D004760 1.2e-294 1016.5 864 68.1
CARHR250590 Cardamine hirsuta HOM05D000880 ORTHO05D004760 3.2e-292 1008.4 868 67.1
A02p24660 Brassica napus HOM05D000880 ORTHO05D004760 2.3e-287 992.3 874 66.4
C02p38920 Brassica napus HOM05D000880 ORTHO05D004760 2.6e-286 988.8 878 66.7
BcaB05g23626 Brassica carinata HOM05D000880 ORTHO05D004760 7.0e-284 980.7 857 64.8
BraA02t07457Z Brassica rapa HOM05D000880 ORTHO05D004760 4.7e-280 968.0 875 65.1
Thhalv10015339m.g Eutrema salsugineum HOM05D000880 ORTHO05D004760 6.0e-275 951.0 831 67.4
THA.LOC104801276 Tarenaya hassleriana HOM05D000880 ORTHO05D004760 3.2e-236 822.4 878 57.1
A09p01860 Brassica napus HOM05D000880 ORTHO05D004760 2.7e-235 819.3 852 58.8
BcaNung04048 Brassica carinata HOM05D000880 ORTHO05D004760 4.8e-232 808.5 859 58.1
Dinv33059 Davidia involucrata HOM05D000880 ORTHO05D004760 1.0e-202 711.1 900 49.0
Cpa.g.sc229.11 Carica papaya HOM05D000880 ORTHO05D004760 1.4e-199 700.7 909 49.0
GSVIVG01028028001 Vitis vinifera HOM05D000880 ORTHO05D004760 2.4e-199 699.9 883 48.8
Thecc.01G301500 Theobroma cacao HOM05D000880 ORTHO05D004760 1.2e-198 697.6 899 47.8
Manes.01G219900 Manihot esculenta HOM05D000880 ORTHO05D004760 7.2e-196 688.3 909 47.7
CSS0046847 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.1e-195 686.8 898 47.4
Ciclev10027776m.g Citrus clementina HOM05D000880 ORTHO05D004760 3.6e-195 686.0 899 47.8
Duzib138G0681 Durio zibethinus HOM05D000880 ORTHO05D004760 3.0e-194 682.9 873 47.3
Gohir.D12G133800 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.0e-194 682.9 886 49.5
PGSC0003DMG400023908 Solanum tuberosum HOM05D000880 ORTHO05D004760 4.0e-194 682.6 869 48.4
Nitab4.5_0002995g0010 Nicotiana tabacum HOM05D000880 ORTHO05D004760 8.8e-194 681.4 894 47.5
Solyc09g005760.3 Solanum lycopersicum HOM05D000880 ORTHO05D004760 8.8e-194 681.4 883 47.9
Gorai.008G144800 Gossypium raimondii HOM05D000880 ORTHO05D004760 2.6e-193 679.9 886 49.4
Oeu000551.1 Olea europaea HOM05D000880 ORTHO05D004760 3.4e-193 679.5 878 47.9
Sopen09g001650 Solanum pennellii HOM05D000880 ORTHO05D004760 7.5e-193 678.3 898 47.2
Lj2A1196T50 Lonicera japonica HOM05D000880 ORTHO05D004760 9.8e-193 677.9 905 46.3
QL12p028379 Quercus lobata HOM05D000880 ORTHO05D004760 2.2e-192 676.8 886 47.5
CAN.G125.1 Capsicum annuum HOM05D000880 ORTHO05D004760 2.8e-192 676.4 899 47.2
CSS0022271 Camellia sinensis var. sinensis HOM05D000880 ORTHO05D004760 2.0e-190 670.2 865 48.0
Atru.chr3.2809 Acer truncatum HOM05D000880 ORTHO05D004760 2.7e-190 669.8 887 47.5
Hma1.2p1_0494F.1_g165220 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 2.7e-190 669.8 895 47.7
Gohir.A12G130000 Gossypium hirsutum HOM05D000880 ORTHO05D004760 5.9e-190 668.7 912 47.6
Eucgr.K03490 Eucalyptus grandis HOM05D000880 ORTHO05D004760 7.7e-190 668.3 899 47.7
TAR362G0476 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.5e-188 662.1 919 46.1
SalBow7G4572 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.2e-187 661.0 905 46.4
CANSAT25G3354 Cannabis sativa HOM05D000880 ORTHO05D004760 8.0e-187 658.3 894 47.2
PGR044G0963 Punica granatum HOM05D000880 ORTHO05D004760 4.0e-186 656.0 878 47.0
Cc01_g20920 Coffea canephora HOM05D000880 ORTHO05D004760 5.2e-186 655.6 892 47.3
Potri.014G128300 Populus trichocarpa HOM05D000880 ORTHO05D004760 8.8e-186 654.8 872 46.1
Sc04g0008900 Simmondsia chinensis HOM05D000880 ORTHO05D004760 3.4e-185 652.9 884 46.0
MELO3C015997.2 Cucumis melo HOM05D000880 ORTHO05D004760 6.3e-184 648.7 881 45.4
CsaV3_7G029310 Cucumis sativus L. HOM05D000880 ORTHO05D004760 8.3e-184 648.3 881 45.3
CiPaw.07G109900 Carya illinoinensis HOM05D000880 ORTHO05D004760 1.1e-183 647.9 884 46.6
Migut.C01322 Erythranthe guttata HOM05D000880 ORTHO05D004760 1.8e-183 647.1 879 46.6
Haze_04946 Corylus avellana HOM05D000880 ORTHO05D004760 2.4e-183 646.7 826 48.4
Cfa005904 Carpinus fangiana HOM05D000880 ORTHO05D004760 2.0e-182 643.7 865 48.0
Potri.002G203700 Populus trichocarpa HOM05D000880 ORTHO05D004760 7.7e-182 641.7 883 45.5
ClCG09G005830 Citrullus lanatus HOM05D000880 ORTHO05D004760 1.7e-181 640.6 872 45.5
SalBow5G3782 Salvia bowleyana HOM05D000880 ORTHO05D004760 1.5e-180 637.5 886 46.5
Sed0027832 Sechium edule HOM05D000880 ORTHO05D004760 7.3e-180 635.2 893 44.8
BcaB01g02051 Brassica carinata HOM05D000880 ORTHO05D004760 1.2e-179 634.4 726 55.0
Lalb_Chr18g0046951 Lupinus albus HOM05D000880 ORTHO05D004760 1.2e-179 634.4 880 45.8
Sabra02G0155400 Salix brachista HOM05D000880 ORTHO05D004760 1.0e-178 631.3 905 44.6
Hund25319 Selenicereus undatus HOM05D000880 ORTHO05D004760 1.8e-178 630.6 887 44.8
COL.COLO4_23336 Corchorus olitorius HOM05D000880 ORTHO05D004760 3.0e-178 629.8 858 45.6
Nn3g21505 Nelumbo nucifera HOM05D000880 ORTHO05D004760 8.9e-178 628.2 860 46.9
Sed0021307 Sechium edule HOM05D000880 ORTHO05D004760 6.4e-176 622.1 867 44.9
SGA_v2.0_scaffold24G10608 Striga asiatica HOM05D000880 ORTHO05D004760 1.1e-175 621.3 867 46.4
TWI14G0456 Tripterygium wilfordii HOM05D000880 ORTHO05D004760 1.1e-175 621.3 905 46.1
Peaxi162Scf00039g00620 Petunia axillaris HOM05D000880 ORTHO05D004760 4.1e-175 619.4 834 46.8
Ah.07g202710 Amaranthus hybridus HOM05D000880 ORTHO05D004760 1.0e-173 614.8 867 44.8
PSO541G5609 Papaver somniferum HOM05D000880 ORTHO05D004760 1.1e-172 611.3 881 44.0
RcHm_v2.0_Chr6g0294141 Rosa chinensis HOM05D000880 ORTHO05D004760 1.1e-172 611.3 877 44.8
DCAR_015239 Daucus carota HOM05D000880 ORTHO05D004760 1.6e-171 607.4 827 46.8
vmacro15153 Vaccinium macrocarpon HOM05D000880 ORTHO05D004760 1.6e-171 607.4 850 46.0
MD11G1308900 Malus domestica HOM05D000880 ORTHO05D004760 1.4e-170 604.4 900 44.3
PSO675G6830 Papaver somniferum HOM05D000880 ORTHO05D004760 1.4e-170 604.4 888 44.1
FAN20G0148 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.1e-170 603.2 878 44.8
EL10Ac9g22871 Beta vulgaris HOM05D000880 ORTHO05D004760 8.9e-170 601.7 827 45.6
FAN27G2693 Fragaria x ananassa HOM05D000880 ORTHO05D004760 1.5e-169 600.9 865 45.1
Lj1g0000333 Lotus japonicus HOM05D000880 ORTHO05D004760 2.0e-169 600.5 886 44.5
Aqoxy2G02932 Aquilegia oxysepala HOM05D000880 ORTHO05D004760 3.4e-169 599.7 881 45.1
arahy.Tifrunner.gnm1.ann1.FAXC2W Arachis hypogaea HOM05D000880 ORTHO05D004760 3.7e-168 596.3 899 44.5
Glyma.19G211500 Glycine max HOM05D000880 ORTHO05D004760 6.4e-168 595.5 877 45.2
AUR62026599 Chenopodium quinoa HOM05D000880 ORTHO05D004760 1.9e-167 594.0 859 44.0
FAN24G3174 Fragaria x ananassa HOM05D000880 ORTHO05D007053 1.9e-167 594.0 871 44.3
MD03G1289000 Malus domestica HOM05D000880 ORTHO05D004760 1.9e-167 594.0 895 44.8
Phvul.001G207700 Phaseolus vulgaris HOM05D000880 ORTHO05D004760 9.2e-167 591.7 873 45.4
Glyma.03G214900 Glycine max HOM05D000880 ORTHO05D004760 1.6e-166 590.9 869 44.9
arahy.Tifrunner.gnm1.ann1.DCE7TU Arachis hypogaea HOM05D000880 ORTHO05D004760 3.5e-166 589.7 901 44.0
Psat3g021720 Pisum sativum HOM05D000880 ORTHO05D004760 4.6e-166 589.3 876 44.1
FAN15G1023 Fragaria x ananassa HOM05D000880 ORTHO05D007053 3.9e-165 586.3 871 44.1
Rhsim11G0035900 Rhododendron simsii HOM05D000880 ORTHO05D004760 7.3e-164 582.0 801 46.2
Rhsim01G0285600 Rhododendron simsii HOM05D000880 ORTHO05D004760 6.2e-163 578.9 810 45.9
Lsat_1_v5_gn_5_191521 Lactuca sativa HOM05D000880 ORTHO05D004760 2.3e-162 577.0 865 45.2
HanXRQChr01g0001311 Helianthus annuus HOM05D000880 ORTHO05D004760 6.8e-162 575.5 854 44.4
FvH4_2g25830 Fragaria vesca HOM05D000880 ORTHO05D004760 2.2e-160 570.5 834 44.1
MSTRG.25483 Avicennia marina HOM05D000880 ORTHO05D004760 1.1e-159 568.2 740 47.0
Ca_09177_v3 Cicer arietinum L. HOM05D000880 ORTHO05D004760 2.4e-159 567.0 882 43.0
TPR.G9606 Trifolium pratense HOM05D000880 ORTHO05D004760 4.1e-159 566.2 865 42.7
Os03g0343300 Oryza sativa ssp. japonica HOM05D000880 ORTHO05D004760 2.5e-156 557.0 865 43.6
unitig_747.g21560 Utricularia gibba HOM05D000880 ORTHO05D004760 3.3e-156 556.6 876 43.7
AUR62005314 Chenopodium quinoa HOM05D000880 ORTHO05D004760 4.7e-155 552.7 871 41.8
HPP92_011847 Vanilla planifolia HOM05D000880 ORTHO05D004760 5.2e-154 549.3 887 41.7
Medtr7g108730 Medicago truncatula HOM05D000880 ORTHO05D004760 1.1e-151 541.6 885 41.5
C09p01900 Brassica napus HOM05D000880 ORTHO05D004760 6.0e-150 535.8 860 44.3
BolC9t53125H Brassica oleracea HOM05D000880 ORTHO05D004760 6.0e-150 535.8 860 44.3
Zm00001eb016440 Zea mays HOM05D000880 ORTHO05D004760 1.0e-149 535.0 853 41.7
Hma1.2p1_1471F.1_g285620 Hydrangea macrophylla HOM05D000880 ORTHO05D004760 2.3e-149 533.9 763 46.5
Nitab4.5_0004207g0040 Nicotiana tabacum HOM05D000880 ORTHO05D004760 2.3e-149 533.9 775 43.4
ATR0100G058 Amborella trichopoda HOM05D000880 ORTHO05D004760 1.9e-148 530.8 856 40.8
ECA248G0121 Erigeron canadensis HOM05D000880 ORTHO05D004760 3.2e-143 513.5 862 41.5
PSO478G4138 Papaver somniferum HOM05D000880 ORTHO05D004760 2.3e-141 507.3 727 44.7
Medtr3g113240 Medicago truncatula HOM05D000880 ORTHO05D004760 2.5e-140 503.8 862 40.7
Oeu028138.2 Olea europaea HOM05D000880 ORTHO05D004760 2.8e-131 473.8 771 41.4
Nitab4.5_0007049g0030 Nicotiana tabacum HOM05D000880 ORTHO05D004760 2.7e-126 457.2 616 44.8
Actinidia26752 Actinidia chinensis HOM05D000880 ORTHO05D004760 1.2e-121 441.8 574 49.1
Atru.chr5.2474 Acer truncatum HOM05D000880 ORTHO05D004760 2.6e-113 414.1 631 43.4
SEGI_18392 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.2e-112 411.0 1046 33.8
Medtr7g091790 Medicago truncatula HOM05D000880 ORTHO05D004760 2.9e-112 410.6 829 35.9
CDE05G0797 Ceratophyllum demersum HOM05D000880 ORTHO05D004760 3.6e-110 403.7 847 36.7
Prupe.8G262300 Prunus persica HOM05D000880 ORTHO05D004760 4.3e-108 396.7 646 43.3
BolC4t25292H Brassica oleracea HOM05D000880 ORTHO05D004760 1.1e-106 392.1 386 62.4
BcaC02g09729 Brassica carinata HOM05D000880 ORTHO05D004760 1.5e-105 388.3 386 62.2
BcaC07g42028 Brassica carinata HOM05D000880 ORTHO05D004760 2.5e-103 380.9 406 59.9
C02p30160 Brassica napus HOM05D000880 ORTHO05D004760 4.2e-103 380.2 390 60.3
BcaC06g34728 Brassica carinata HOM05D000880 ORTHO05D004760 7.4e-100 369.4 350 64.9
SMO146G0364 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 2.9e-96 357.5 893 32.9
Mapoly0012s0035 Marchantia polymorpha HOM05D000880 ORTHO05D004760 1.0e-88 332.4 1035 30.7
C08p50820 Brassica napus HOM05D000880 ORTHO05D004760 2.2e-83 314.7 386 54.7
MBI19_g43564_MAGBIO Magnolia biondii HOM05D000880 ORTHO05D004760 6.3e-83 313.2 394 48.0
VMungo1383G0181 Vigna mungo HOM05D000880 ORTHO05D004760 1.4e-82 312.0 432 45.1
BcaC03g15404 Brassica carinata HOM05D000880 ORTHO05D001048 3.5e-81 307.4 286 66.1
PSO541G3373 Papaver somniferum HOM05D000880 ORTHO05D004760 2.9e-80 304.3 446 44.2
BolC8t52610H Brassica oleracea HOM05D000880 ORTHO05D004760 5.7e-76 290.0 289 62.6
BcaC08g44566 Brassica carinata HOM05D000880 ORTHO05D004760 9.8e-76 289.3 350 54.0
Pp3c9_17240 Physcomitrium patens HOM05D000880 ORTHO05D004760 6.5e-72 276.6 975 30.3
PSO782G1438 Papaver somniferum HOM05D000880 ORTHO05D004760 5.5e-71 273.5 442 41.2
BraA04t17148Z Brassica rapa HOM05D000880 ORTHO05D004760 6.1e-70 270.0 292 59.2
AagrBONN_evm.TU.Sc2ySwM_117.3282 Anthoceros agrestis HOM05D000880 ORTHO05D004760 8.0e-70 269.6 955 29.6
A04p15040 Brassica napus HOM05D000880 ORTHO05D004760 6.8e-69 266.5 293 59.0
VMungo1383G0715 Vigna mungo HOM05D000880 ORTHO05D004760 5.0e-64 250.4 190 66.3
MSTRG.25474 Avicennia marina HOM05D000880 ORTHO05D004760 2.5e-63 248.1 203 61.1
A09p11280 Brassica napus HOM05D000880 ORTHO05D004760 3.3e-63 247.7 285 57.5
PGR003G0015 Punica granatum HOM05D000880 ORTHO05D004760 2.1e-62 245.0 327 44.0
A04p00500 Brassica napus HOM05D000880 ORTHO05D004760 6.1e-62 243.4 285 56.8
Medtr8g058740 Medicago truncatula HOM05D000880 ORTHO05D004760 4.0e-61 240.7 338 42.6
TAR633G1122 Trochodendron aralioides HOM05D000880 ORTHO05D004760 5.7e-60 236.9 249 50.2
TAR636G2791 Trochodendron aralioides HOM05D000880 ORTHO05D004760 1.1e-58 232.6 286 45.1
CBR_g19437 Chara braunii HOM05D000880 ORTHO05D004760 2.7e-57 228.0 975 24.9
MCO13G364 Micromonas commoda HOM05D000880 ORTHO05D004760 1.1e-53 216.1 729 29.4
PSO210G4167 Papaver somniferum HOM05D000880 ORTHO05D004760 2.2e-51 208.4 309 45.0
A10p23840 Brassica napus HOM05D000880 ORTHO05D004760 3.2e-50 204.5 194 62.9
C07p40760 Brassica napus HOM05D000880 ORTHO05D004760 9.5e-47 193.0 160 68.8
PRCOL_00002788 Prasinoderma coloniale HOM05D000880 ORTHO05D004760 4.0e-45 187.6 661 27.7
Oeu000538.1 Olea europaea HOM05D000880 ORTHO05D004760 7.1e-42 176.8 260 41.2
SEGI_12067 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.8e-38 164.9 327 37.0
SEGI_30897 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 1.1e-37 162.9 160 53.8
CAN.G1465.7 Capsicum annuum HOM05D000880 ORTHO05D004760 4.1e-34 151.0 112 66.1
Gohir.D12G134950 Gossypium hirsutum HOM05D000880 ORTHO05D004760 3.3e-31 141.4 177 50.8
Gorai.008G145900 Gossypium raimondii HOM05D000880 ORTHO05D004760 4.3e-31 141.0 172 50.0
SMO146G0006 Selaginella moellendorffii HOM05D000880 ORTHO05D004760 8.1e-30 136.7 184 41.8
Cfa026849 Carpinus fangiana HOM05D000880 ORTHO05D004760 6.9e-29 133.7 671 26.1
TAR627G0201 Trochodendron aralioides HOM05D000880 ORTHO05D004760 2.2e-27 128.6 302 31.8
Cre11.g478950 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 5.4e-26 124.0 155 40.0
Cre11.g478966 Chlamydomonas reinhardtii HOM05D000880 ORTHO05D004760 5.4e-26 124.0 155 40.0
CAN.G1018.15 Capsicum annuum HOM05D000880 ORTHO05D004760 1.6e-22 112.5 133 46.6
AT5G36980 Arabidopsis thaliana HOM05D000880 ORTHO05D004760 2.1e-17 95.5 180 39.4
Gohir.A12G131050 Gossypium hirsutum HOM05D000880 ORTHO05D004760 2.7e-17 95.1 124 46.8
SEGI_39037 Sequoiadendron giganteum HOM05D000880 ORTHO05D004760 2.0e-12 79.0 121 43.8
BcaB04g17655 Brassica carinata HOM05D005969 ORTHO05D007407 2.7e-09 68.6 58 62.1
Actinidia21043 Actinidia chinensis HOM05D000203 ORTHO05D000135 2.5e-07 62.0 215 25.1
A04p15050 Brassica napus HOM05D000880 ORTHO05D014501 1.6e-06 59.3 47 68.1
CAN.G1015.4 Capsicum annuum HOM05D004625 ORTHO05D006054 1.6e-06 59.3 50 54.0


User provided reference genes

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