Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G07890 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 5.2e-208 727.6 410 100.0
AL6G18220 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 2.3e-192 675.6 410 91.5
CARHR205310 Cardamine hirsuta HOM05D006409 ORTHO05D008250 6.9e-176 620.9 410 85.1
Sp6g35060 Schrenkiella parvula HOM05D006409 ORTHO05D008250 7.6e-167 590.9 411 80.8
Thhalv10013673m.g Eutrema salsugineum HOM05D006409 ORTHO05D008250 5.4e-165 584.7 409 80.2
BolC9t59643H Brassica oleracea HOM05D006409 ORTHO05D008250 2.2e-158 562.8 413 77.7
A10p28660 Brassica napus HOM05D006409 ORTHO05D008250 1.6e-156 556.6 410 77.6
Carub.0006s0678 Capsella rubella HOM05D006409 ORTHO05D008250 1.3e-155 553.5 410 78.0
C09p68980 Brassica napus HOM05D006409 ORTHO05D006405 1.8e-155 553.1 412 77.2
BcaC06g32511 Brassica carinata HOM05D001913 ORTHO05D008250 4.8e-153 545.0 390 78.5
BcaNung06903 Brassica carinata HOM05D006409 ORTHO05D008250 1.4e-152 543.5 411 76.9
C03p03950 Brassica napus HOM05D006409 ORTHO05D008250 1.2e-151 540.4 415 75.9
BolC3t12932H Brassica oleracea HOM05D006409 ORTHO05D008250 1.2e-151 540.4 415 75.9
BraA10t44915Z Brassica rapa HOM05D001913 ORTHO05D006405 9.3e-149 530.8 392 78.1
BcaB01g05645 Brassica carinata HOM05D006409 ORTHO05D008250 1.5e-146 523.5 421 74.3
A03p03510 Brassica napus HOM05D006409 ORTHO05D008250 4.8e-145 518.5 415 74.2
BraA03t09701Z Brassica rapa HOM05D006409 ORTHO05D008250 1.2e-143 513.8 416 74.0
AL8G37860 Arabidopsis lyrata HOM05D006409 ORTHO05D008250 1.8e-115 420.2 411 62.0
Carub.0008s2186 Capsella rubella HOM05D006409 ORTHO05D008250 3.4e-114 416.0 397 61.5
THA.LOC104818336 Tarenaya hassleriana HOM05D006409 ORTHO05D008250 7.0e-112 408.3 402 59.7
BcaC02g08700 Brassica carinata HOM05D006409 ORTHO05D008250 5.5e-101 372.1 287 72.5
AT5G61200 Arabidopsis thaliana HOM05D006409 ORTHO05D008250 5.0e-94 349.0 410 55.1
C04p51620 Brassica napus HOM05D006409 ORTHO05D008250 6.2e-92 342.0 293 68.6
Sabra15G0078400 Salix brachista HOM05D006409 ORTHO05D008250 2.2e-89 333.6 374 53.5
BcaC02g08698 Brassica carinata HOM05D006409 ORTHO05D008250 1.9e-88 330.5 287 67.2
Potri.015G048900 Populus trichocarpa HOM05D006409 ORTHO05D008250 1.2e-87 327.8 383 53.5
TAR629G2567 Trochodendron aralioides HOM05D006409 ORTHO05D008250 4.7e-84 315.8 389 50.1
Ciclev10020474m.g Citrus clementina HOM05D006409 ORTHO05D008250 6.2e-84 315.5 396 49.2
Thecc.03G097200 Theobroma cacao HOM05D006409 ORTHO05D008250 9.8e-82 308.1 379 49.9
QL10p018676 Quercus lobata HOM05D006409 ORTHO05D008250 5.4e-80 302.4 385 47.8
Duzib084G0027 Durio zibethinus HOM05D006409 ORTHO05D008250 1.2e-79 301.2 383 48.3
MD14G1208800 Malus domestica HOM05D006409 ORTHO05D008250 1.3e-78 297.7 394 48.7
Dinv38786 Davidia involucrata HOM05D006409 ORTHO05D008250 2.3e-78 297.0 387 48.6
Aqoxy3G03581 Aquilegia oxysepala HOM05D006409 ORTHO05D008250 2.1e-76 290.4 399 47.9
CANSAT80G1113 Cannabis sativa HOM05D006409 ORTHO05D008250 4.0e-75 286.2 387 47.5
Manes.14G084000 Manihot esculenta HOM05D006409 ORTHO05D008250 3.4e-74 283.1 382 48.4
Cpa.g.sc94.9 Carica papaya HOM05D006409 ORTHO05D008250 7.6e-74 282.0 397 47.1
BcaC02g08699 Brassica carinata HOM05D006409 ORTHO05D008250 3.7e-73 279.6 212 72.6
Prupe.5G201100 Prunus persica HOM05D006409 ORTHO05D008250 8.4e-73 278.5 385 47.3
CiPaw.11G050000 Carya illinoinensis HOM05D006409 ORTHO05D008250 2.4e-72 276.9 385 46.5
Rhsim08G0148500 Rhododendron simsii HOM05D006409 ORTHO05D008250 1.6e-71 274.2 384 46.6
Nitab4.5_0001961g0070 Nicotiana tabacum HOM05D006409 ORTHO05D008250 2.1e-71 273.9 390 45.4
PGR083G0341 Punica granatum HOM05D006409 ORTHO05D008250 8.6e-70 268.5 360 47.2
Gohir.D12G183500 Gossypium hirsutum HOM05D006409 ORTHO05D008250 7.3e-69 265.4 383 45.4
Gorai.008G196800 Gossypium raimondii HOM05D006409 ORTHO05D008250 7.3e-69 265.4 380 45.8
FAN18G2755 Fragaria x ananassa HOM05D006409 ORTHO05D008250 1.2e-68 264.6 381 46.5
FAN13G1588 Fragaria x ananassa HOM05D006409 ORTHO05D008250 6.2e-68 262.3 379 46.7
Cfa019299 Carpinus fangiana HOM05D006409 ORTHO05D008250 1.4e-67 261.2 391 44.5
Lj4g0024886 Lotus japonicus HOM05D006409 ORTHO05D008250 1.4e-67 261.2 387 44.4
Sopen12g016610 Solanum pennellii HOM05D006409 ORTHO05D008250 9.9e-66 255.0 390 43.6
Oeu014392.1 Olea europaea HOM05D006409 ORTHO05D006262 1.7e-65 254.2 395 42.0
TWI81G1094 Tripterygium wilfordii HOM05D006409 ORTHO05D008250 2.9e-65 253.4 394 44.4
Nitab4.5_0005160g0050 Nicotiana tabacum HOM05D006409 ORTHO05D008250 3.8e-65 253.1 399 43.4
Eucgr.B00571 Eucalyptus grandis HOM05D006409 ORTHO05D008250 9.3e-64 248.4 377 43.8
Actinidia09250 Actinidia chinensis HOM05D006409 ORTHO05D008250 2.1e-63 247.3 350 45.4
PSO302G0195 Papaver somniferum HOM05D006409 ORTHO05D008250 1.0e-62 245.0 385 41.6
RcHm_v2.0_Chr7g0182601 Rosa chinensis HOM05D006409 ORTHO05D008250 1.3e-62 244.6 385 43.4
Gohir.A12G180800 Gossypium hirsutum HOM05D006409 ORTHO05D008250 2.3e-62 243.8 385 43.1
COL.COLO4_22753 Corchorus olitorius HOM05D006409 ORTHO05D008250 6.6e-62 242.3 381 42.3
PGSC0003DMG400012806 Solanum tuberosum HOM05D006409 ORTHO05D008250 1.5e-61 241.1 418 40.4
MELO3C002015.2 Cucumis melo HOM05D006409 ORTHO05D008250 2.5e-61 240.4 381 43.0
GSVIVG01007923001 Vitis vinifera HOM05D006409 ORTHO05D008250 2.5e-61 240.4 406 42.4
Glyma.17G076800 Glycine max HOM05D006409 ORTHO05D008250 2.1e-60 237.3 385 42.6
Peaxi162Scf00106g00081 Petunia axillaris HOM05D006409 ORTHO05D008250 6.2e-60 235.7 405 41.7
DCAR_026015 Daucus carota HOM05D006409 ORTHO05D008250 1.8e-59 234.2 385 43.1
Cc00_g02320 Coffea canephora HOM05D006409 ORTHO05D008250 3.1e-59 233.4 380 41.8
CsaV3_1G005860 Cucumis sativus L. HOM05D006409 ORTHO05D008250 3.1e-59 233.4 377 42.4
PSO017G5610 Papaver somniferum HOM05D006409 ORTHO05D008250 4.0e-59 233.0 376 42.3
arahy.Tifrunner.gnm1.ann1.PS4SMH Arachis hypogaea HOM05D006409 ORTHO05D008250 5.3e-59 232.6 373 42.4
PSO478G4763 Papaver somniferum HOM05D006409 ORTHO05D008250 9.0e-59 231.9 376 41.8
Glyma.05G022800 Glycine max HOM05D006409 ORTHO05D008250 1.5e-58 231.1 386 42.2
VMungo1215G3198 Vigna mungo HOM05D006409 ORTHO05D008250 2.0e-58 230.7 367 45.0
Solyc12g036300.3 Solanum lycopersicum HOM05D006409 ORTHO05D008250 7.6e-58 228.8 390 41.0
arahy.Tifrunner.gnm1.ann1.4D2E4C Arachis hypogaea HOM05D006409 ORTHO05D008250 3.8e-57 226.5 373 41.3
Phvul.L001604 Phaseolus vulgaris HOM05D006409 ORTHO05D008250 1.1e-56 224.9 341 42.8
CANSAT80G0413 Cannabis sativa HOM05D006409 ORTHO05D008250 2.4e-56 223.8 350 43.4
MSTRG.22971 Avicennia marina HOM05D006409 ORTHO05D008250 5.4e-56 222.6 404 38.4
Atru.chr9.377 Acer truncatum HOM05D006409 ORTHO05D008250 6.0e-55 219.2 309 45.0
FAN08G0388 Fragaria x ananassa HOM05D006409 ORTHO05D008250 6.0e-55 219.2 381 42.8
vmacro17591 Vaccinium macrocarpon HOM05D006409 ORTHO05D008250 6.6e-54 215.7 453 38.9
FvH4_5g14277 Fragaria vesca HOM05D006409 ORTHO05D008250 8.7e-54 215.3 332 46.1
Haze_07680 Corylus avellana HOM05D006409 ORTHO05D008250 4.3e-53 213.0 314 44.9
ClCG04G011930 Citrullus lanatus HOM05D006409 ORTHO05D008250 1.6e-52 211.1 380 40.3
Lalb_Chr13g0302951 Lupinus albus HOM05D006409 ORTHO05D008250 5.3e-51 206.1 384 39.6
Medtr4g109330 Medicago truncatula HOM05D006409 ORTHO05D008250 9.0e-51 205.3 329 41.9
C04p51610 Brassica napus HOM05D006409 ORTHO05D008250 2.0e-50 204.1 156 71.2
Lj5A105T60 Lonicera japonica HOM05D006409 ORTHO05D008250 4.9e-49 199.5 322 41.9
Actinidia04843 Actinidia chinensis HOM05D006409 ORTHO05D008250 8.4e-49 198.7 250 46.8
TPR.G2042 Trifolium pratense HOM05D006409 ORTHO05D008250 1.1e-48 198.4 376 38.8
Psat4g048440 Pisum sativum HOM05D006409 ORTHO05D008250 4.2e-48 196.4 325 39.7
CAN.G172.10 Capsicum annuum HOM05D006409 ORTHO05D008250 7.1e-48 195.7 351 38.5
Nn4g23374 Nelumbo nucifera HOM05D006409 ORTHO05D008250 1.2e-47 194.9 390 37.9
ATR0064G033 Amborella trichopoda HOM05D006409 ORTHO05D008250 1.6e-47 194.5 402 36.1
HanXRQChr09g0270151 Helianthus annuus HOM05D006409 ORTHO05D008250 7.9e-47 192.2 384 38.3
SalBow5G3762 Salvia bowleyana HOM05D006409 ORTHO05D008250 3.0e-46 190.3 389 37.8
CDE06G0998 Ceratophyllum demersum HOM05D006409 ORTHO05D008250 1.1e-45 188.3 337 41.2
AUR62021594 Chenopodium quinoa HOM05D006409 ORTHO05D008250 3.3e-45 186.8 342 39.8
Migut.I00315 Erythranthe guttata HOM05D006409 ORTHO05D008250 6.2e-44 182.6 396 36.6
Zm00001eb108440 Zea mays HOM05D006409 ORTHO05D008250 3.8e-41 173.3 337 36.5
Sed0008489 Sechium edule HOM05D006409 ORTHO05D008250 1.9e-40 171.0 383 37.1
Sc04g0003080 Simmondsia chinensis HOM05D006409 ORTHO05D008250 2.5e-40 170.6 381 37.0
Os07g0598700 Oryza sativa ssp. japonica HOM05D006409 ORTHO05D008250 7.1e-40 169.1 323 36.8
AUR62008498 Chenopodium quinoa HOM05D006409 ORTHO05D008250 2.3e-38 164.1 391 37.1
ECA232G2526 Erigeron canadensis HOM05D006409 ORTHO05D008250 5.1e-38 162.9 385 36.1
Ah.02g113920 Amaranthus hybridus HOM05D006409 ORTHO05D008250 4.3e-37 159.8 383 35.8
Ca_21789_v3 Cicer arietinum L. HOM05D006409 ORTHO05D008250 2.8e-36 157.1 280 40.4
EL10Ac5g11100 Beta vulgaris HOM05D006409 ORTHO05D008250 9.0e-35 152.1 382 34.8
Hund02605 Selenicereus undatus HOM05D006409 ORTHO05D008250 2.6e-34 150.6 389 35.2
HanXRQChr16g0502261 Helianthus annuus HOM05D006409 ORTHO05D008250 5.1e-30 136.3 356 33.1
Duzib068G0538 Durio zibethinus HOM05D006409 ORTHO05D008250 2.8e-28 130.6 206 40.8
C04p51590 Brassica napus HOM05D006409 ORTHO05D008250 3.8e-25 120.2 94 72.3
C04p51600 Brassica napus HOM05D006409 ORTHO05D008250 1.1e-24 118.6 95 71.6
Lsat_1_v5_gn_4_110201 Lactuca sativa HOM05D006409 ORTHO05D008250 6.7e-22 109.4 385 30.9
SEGI_28191 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 4.5e-18 96.7 404 24.8
SEGI_37085 Sequoiadendron giganteum HOM05D006409 ORTHO05D008250 4.5e-18 96.7 404 24.8
Actinidia12838 Actinidia chinensis HOM05D006409 ORTHO05D008250 2.2e-17 94.4 86 64.0
Thhalv10003670m.g Eutrema salsugineum HOM05D001456 ORTHO05D014991 4.2e-16 90.1 119 44.5
SGA_v2.0_scaffold25G10967 Striga asiatica HOM05D006409 ORTHO05D008250 6.7e-14 82.8 347 28.2
arahy.Tifrunner.gnm1.ann1.LPT8KM Arachis hypogaea HOM05D006409 ORTHO05D008250 8.8e-14 82.4 73 63.0
BcaC06g33174 Brassica carinata HOM05D001456 ORTHO05D014991 1.1e-13 82.0 123 39.8
A03p46820 Brassica napus HOM05D001456 ORTHO05D014991 3.1e-11 73.9 140 35.7
CARHR274940 Cardamine hirsuta HOM05D001456 ORTHO05D014991 3.1e-11 73.9 207 31.4
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 7.7e-10 69.3 112 39.3
Carub.0008s2185 Capsella rubella HOM05D001456 ORTHO05D002799 5.0e-09 66.6 119 37.0
C07p44870 Brassica napus HOM05D001456 ORTHO05D014991 3.2e-08 63.9 235 26.4
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 7.2e-08 62.8 114 39.5
BolC7t45011H Brassica oleracea HOM05D001456 ORTHO05D014991 9.4e-08 62.4 114 38.6
AL8G37850 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 1.2e-07 62.0 143 35.0
A03p46830 Brassica napus HOM05D001456 ORTHO05D014991 1.2e-07 62.0 87 44.8
BraA02t09090Z Brassica rapa HOM05D001456 ORTHO05D014991 2.3e-06 57.8 142 35.9
C07p44880 Brassica napus HOM05D001456 ORTHO05D014991 3.0e-06 57.4 158 31.0
BolC7t45009H Brassica oleracea HOM05D001456 ORTHO05D002799 6.7e-06 56.2 112 35.7
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 8.8e-06 55.8 99 39.4


User provided reference genes

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