Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G05720 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 1.0e-257 892.9 452 100.0
AL6G21620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 1.2e-96 357.8 770 38.8
AT5G08695 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 3.4e-75 286.6 680 36.2
AL6G15620 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 3.1e-68 263.5 714 35.0
Aa31LG6G2170 Aethionema arabicum HOM05D000604 ORTHO05D004856 3.4e-67 260.0 824 32.9
Carub.0007s2157 Capsella rubella HOM05D000604 ORTHO05D004856 6.4e-66 255.8 830 32.2
Thhalv10024436m.g Eutrema salsugineum HOM05D000604 ORTHO05D004856 3.5e-64 250.0 824 31.9
AT4G19610 Arabidopsis thaliana HOM05D000604 ORTHO05D004856 6.0e-64 249.2 822 31.3
CARHR226400 Cardamine hirsuta HOM05D000604 ORTHO05D004856 1.9e-62 244.2 815 31.4
Sp7g18180 Schrenkiella parvula HOM05D000604 ORTHO05D004856 1.7e-55 221.1 812 30.3
AL7G34450 Arabidopsis lyrata HOM05D000604 ORTHO05D004856 3.0e-55 220.3 539 36.5
BolC1t01328H Brassica oleracea HOM05D000604 ORTHO05D004856 2.5e-54 217.2 796 29.1
BcaNung01771 Brassica carinata HOM05D000604 ORTHO05D004856 2.8e-53 213.8 808 28.8
CARHR207550 Cardamine hirsuta HOM05D000604 ORTHO05D004856 2.6e-51 207.2 309 46.3
BraA01t01094Z Brassica rapa HOM05D000604 ORTHO05D004856 3.4e-51 206.8 798 29.2
A01p11470 Brassica napus HOM05D000604 ORTHO05D004856 9.9e-51 205.3 799 29.0
BcaC09g51398 Brassica carinata HOM05D000604 ORTHO05D004856 7.1e-49 199.1 789 28.3
C01p13560 Brassica napus HOM05D000604 ORTHO05D004856 7.1e-49 199.1 789 28.3
Carub.0006s0461 Capsella rubella HOM05D000604 ORTHO05D004856 9.0e-44 182.2 297 44.8
THA.LOC104806210 Tarenaya hassleriana HOM05D000604 ORTHO05D004856 3.0e-39 167.2 537 33.0
CANSAT35G1381 Cannabis sativa HOM05D000604 ORTHO05D004856 1.1e-36 158.7 701 27.1
Lalb_Chr19g0132151 Lupinus albus HOM05D000604 ORTHO05D004856 1.9e-30 137.9 300 36.3
Ciclev10017571m.g Citrus clementina HOM05D000604 ORTHO05D004856 1.6e-29 134.8 545 28.3
CANSAT56G2059 Cannabis sativa HOM05D000604 ORTHO05D004856 3.7e-29 133.7 546 28.8
Psat2g006120 Pisum sativum HOM05D000604 ORTHO05D004856 3.7e-29 133.7 766 25.6
MD10G1238300 Malus domestica HOM05D000604 ORTHO05D004856 4.8e-29 133.3 530 29.2
Duzib235G1121 Durio zibethinus HOM05D000604 ORTHO05D004856 1.4e-28 131.7 541 27.5
Lsat_1_v5_gn_7_29360 Lactuca sativa HOM05D000604 ORTHO05D004856 1.8e-28 131.3 531 28.8
Glyma.13G032300 Glycine max HOM05D000604 ORTHO05D004856 9.0e-28 129.0 294 35.4
TPR.G6171 Trifolium pratense HOM05D000604 ORTHO05D004856 1.2e-27 128.6 299 34.8
CiPaw.04G077700 Carya illinoinensis HOM05D000604 ORTHO05D004856 3.4e-27 127.1 540 28.0
Manes.13G073400 Manihot esculenta HOM05D000604 ORTHO05D004856 3.4e-27 127.1 304 35.5
Phvul.001G070900 Phaseolus vulgaris HOM05D000604 ORTHO05D004856 4.5e-27 126.7 526 28.7
COL.COLO4_30935 Corchorus olitorius HOM05D000604 ORTHO05D004856 5.8e-27 126.3 546 27.5
Glyma.14G154500 Glycine max HOM05D000604 ORTHO05D004856 7.6e-27 125.9 294 34.0
Prupe.4G106000 Prunus persica HOM05D000604 ORTHO05D004856 1.0e-26 125.6 538 28.3
Nn1g08459 Nelumbo nucifera HOM05D000604 ORTHO05D004856 1.3e-26 125.2 302 34.4
Gorai.011G050800 Gossypium raimondii HOM05D000604 ORTHO05D004856 1.7e-26 124.8 544 28.9
arahy.Tifrunner.gnm1.ann1.GY8SZ4 Arachis hypogaea HOM05D000604 ORTHO05D004856 3.8e-26 123.6 541 29.0
Gohir.A10G046400 Gossypium hirsutum HOM05D000604 ORTHO05D004856 4.9e-26 123.2 538 27.7
Medtr7g096260 Medicago truncatula HOM05D000604 ORTHO05D004856 4.9e-26 123.2 531 27.5
arahy.Tifrunner.gnm1.ann1.2H30NS Arachis hypogaea HOM05D000604 ORTHO05D004856 6.5e-26 122.9 303 35.6
Gohir.D10G047700 Gossypium hirsutum HOM05D000604 ORTHO05D004856 6.5e-26 122.9 544 28.7
Ca_08573_v3 Cicer arietinum L. HOM05D000604 ORTHO05D004856 1.9e-25 121.3 449 29.8
Glyma.09G265100 Glycine max HOM05D000604 ORTHO05D004856 2.5e-25 120.9 423 30.0
MBI18_g32818_MAGBIO Magnolia biondii HOM05D000604 ORTHO05D004856 3.2e-25 120.6 304 33.9
PGR119G0174 Punica granatum HOM05D000604 ORTHO05D004856 3.2e-25 120.6 549 27.9
Medtr7g094660 Medicago truncatula HOM05D000604 ORTHO05D004856 4.2e-25 120.2 536 28.4
Peaxi162Scf00036g01624 Petunia axillaris HOM05D000604 ORTHO05D004856 5.5e-25 119.8 550 28.2
TWI73G0328 Tripterygium wilfordii HOM05D000604 ORTHO05D004856 5.5e-25 119.8 534 27.7
Sabra03G0108600 Salix brachista HOM05D000604 ORTHO05D004856 7.1e-25 119.4 550 27.5
HanXRQChr04g0119081 Helianthus annuus HOM05D000604 ORTHO05D004856 1.6e-24 118.2 534 26.8
Hma1.2p1_0589F.1_g184700 Hydrangea macrophylla HOM05D000604 ORTHO05D004856 1.6e-24 118.2 294 33.7
Thecc.06G136200 Theobroma cacao HOM05D000604 ORTHO05D004856 1.6e-24 118.2 536 27.6
VMungo0647G0785 Vigna mungo HOM05D000604 ORTHO05D004856 1.6e-24 118.2 284 33.5
Actinidia13225 Actinidia chinensis HOM05D000604 ORTHO05D004856 2.1e-24 117.9 519 28.5
Solyc02g081940.3 Solanum lycopersicum HOM05D000604 ORTHO05D004856 2.1e-24 117.9 544 28.5
PGSC0003DMG400007320 Solanum tuberosum HOM05D000604 ORTHO05D004856 2.1e-24 117.9 544 28.5
GSVIVG01012163001 Vitis vinifera HOM05D000604 ORTHO05D004856 2.1e-24 117.9 291 36.1
Sopen02g026570 Solanum pennellii HOM05D000604 ORTHO05D004856 4.6e-24 116.7 544 28.5
Aqoxy5G00580 Aquilegia oxysepala HOM05D000604 ORTHO05D004856 6.1e-24 116.3 535 27.3
BraSC37t46166Z Brassica rapa HOM05D000604 ORTHO05D028239 7.9e-24 115.9 128 57.0
TAR371G0160 Trochodendron aralioides HOM05D000604 ORTHO05D004856 1.0e-23 115.5 763 24.8
CSS0014014 Camellia sinensis var. sinensis HOM05D000604 ORTHO05D004856 1.8e-23 114.8 532 27.4
ECA236G3264 Erigeron canadensis HOM05D000604 ORTHO05D004856 1.8e-23 114.8 523 27.0
PSO017G6514 Papaver somniferum HOM05D000604 ORTHO05D004856 3.0e-23 114.0 303 32.7
PSO063G6978 Papaver somniferum HOM05D000604 ORTHO05D004856 8.7e-23 112.5 303 32.7
Cfa008710 Carpinus fangiana HOM05D000604 ORTHO05D004856 1.1e-22 112.1 306 31.7
PSO724G1052 Papaver somniferum HOM05D000604 ORTHO05D004856 1.1e-22 112.1 285 32.3
Potri.003G149600 Populus trichocarpa HOM05D000604 ORTHO05D004856 1.1e-22 112.1 304 34.2
PSO135G0531 Papaver somniferum HOM05D000604 ORTHO05D004856 1.5e-22 111.7 292 32.2
Lj1g0003644 Lotus japonicus HOM05D001476 ORTHO05D004856 3.3e-22 110.5 300 31.7
QL06p028587 Quercus lobata HOM05D000604 ORTHO05D004856 3.3e-22 110.5 272 34.2
DCAR_007039 Daucus carota HOM05D000604 ORTHO05D004856 4.3e-22 110.2 540 26.7
Dinv05871 Davidia involucrata HOM05D000604 ORTHO05D004856 4.3e-22 110.2 296 34.1
vmacro11016 Vaccinium macrocarpon HOM05D000604 ORTHO05D004856 4.3e-22 110.2 303 33.0
Lj1g0003482 Lotus japonicus HOM05D000604 ORTHO05D004856 5.7e-22 109.8 546 27.5
Atru.BG.155.p Acer truncatum HOM05D000604 ORTHO05D004856 7.4e-22 109.4 190 42.1
Cpa.g.sc192.5 Carica papaya HOM05D000604 ORTHO05D004856 9.7e-22 109.0 426 29.6
CsaV3_4G006300 Cucumis sativus L. HOM05D000604 ORTHO05D004856 9.7e-22 109.0 293 35.2
AUR62039584 Chenopodium quinoa HOM05D000604 ORTHO05D004856 1.3e-21 108.6 540 26.1
Cc09_g04940 Coffea canephora HOM05D000604 ORTHO05D004856 1.3e-21 108.6 299 33.1
Migut.O00375 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.3e-21 108.6 524 27.1
AUR62019648 Chenopodium quinoa HOM05D000604 ORTHO05D004856 1.6e-21 108.2 521 26.3
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 1.6e-21 108.2 236 36.9
MSTRG.7607 Avicennia marina HOM05D000604 ORTHO05D004856 2.2e-21 107.8 297 33.7
Migut.M00572 Erythranthe guttata HOM05D000604 ORTHO05D004856 2.2e-21 107.8 297 32.0
Eucgr.K02063 Eucalyptus grandis HOM05D000604 ORTHO05D004856 4.8e-21 106.7 539 26.3
TAR626G0202 Trochodendron aralioides HOM05D000604 ORTHO05D004856 6.3e-21 106.3 303 32.7
Rhsim02G0169700 Rhododendron simsii HOM05D000604 ORTHO05D004856 8.2e-21 105.9 331 31.4
Sc24g0002870 Simmondsia chinensis HOM05D000604 ORTHO05D004856 1.1e-20 105.5 539 26.9
Migut.B01297 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.4e-20 105.1 292 32.2
MELO3C016321.2 Cucumis melo HOM05D000604 ORTHO05D004856 2.4e-20 104.4 293 34.1
CDE05G3452 Ceratophyllum demersum HOM05D000604 ORTHO05D004856 4.1e-20 103.6 251 33.5
Haze_11719 Corylus avellana HOM05D000604 ORTHO05D004856 4.1e-20 103.6 198 37.9
ClCG07G014770 Citrullus lanatus HOM05D000604 ORTHO05D004856 6.9e-20 102.8 300 33.3
FAN16G0408 Fragaria x ananassa HOM05D000604 ORTHO05D004856 6.9e-20 102.8 534 27.2
FAN21G2591 Fragaria x ananassa HOM05D000604 ORTHO05D004856 9.0e-20 102.4 528 26.9
SalBow8G1358 Salvia bowleyana HOM05D000604 ORTHO05D004856 9.0e-20 102.4 288 30.6
FAN25G0854 Fragaria x ananassa HOM05D000604 ORTHO05D004856 1.2e-19 102.1 533 26.6
Zm00001eb430700 Zea mays HOM05D000604 ORTHO05D004856 1.2e-19 102.1 301 31.9
Zm00001eb442350 Zea mays HOM05D000604 ORTHO05D004856 1.2e-19 102.1 301 31.9
Ah.04g154060 Amaranthus hybridus HOM05D000604 ORTHO05D004856 2.0e-19 101.3 296 33.1
Nitab4.5_0000632g0160 Nicotiana tabacum HOM05D000604 ORTHO05D004856 2.0e-19 101.3 271 33.9
FvH4_3g11840 Fragaria vesca HOM05D000604 ORTHO05D004856 7.7e-19 99.4 528 26.5
Lj2A328T81 Lonicera japonica HOM05D000604 ORTHO05D004856 1.0e-18 99.0 445 28.1
Os04g0611500 Oryza sativa ssp. japonica HOM05D000604 ORTHO05D004856 5.0e-18 96.7 301 30.9
RcHm_v2.0_Chr5g0019271 Rosa chinensis HOM05D000604 ORTHO05D004856 5.0e-18 96.7 528 26.1
ATR0680G299 Amborella trichopoda HOM05D000604 ORTHO05D004856 1.4e-17 95.1 75 64.0
Hund20696 Selenicereus undatus HOM05D000604 ORTHO05D004856 4.2e-17 93.6 236 33.1
SHI01959 Sapria himalayana HOM05D000604 ORTHO05D004856 5.5e-17 93.2 74 62.2
Migut.M00563 Erythranthe guttata HOM05D000604 ORTHO05D004856 7.2e-17 92.8 76 60.5
Nitab4.5_0000844g0350 Nicotiana tabacum HOM05D000604 ORTHO05D004856 7.2e-17 92.8 109 49.5
C09p38990 Brassica napus HOM05D000604 ORTHO05D004856 9.4e-17 92.4 133 48.1
BolC9t56779H Brassica oleracea HOM05D000604 ORTHO05D004856 9.4e-17 92.4 133 48.1
Mapoly0030s0107 Marchantia polymorpha HOM05D000604 ORTHO05D004856 1.2e-16 92.0 425 24.7
Migut.M00474 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.6e-16 91.7 325 28.3
Migut.M00477 Erythranthe guttata HOM05D000604 ORTHO05D004856 1.6e-16 91.7 76 59.2
Ah.10g032170 Amaranthus hybridus HOM05D000604 ORTHO05D004856 4.6e-16 90.1 499 24.2
SMO301G0078 Selaginella moellendorffii HOM05D000604 ORTHO05D004856 7.9e-16 89.4 193 34.2
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 1.8e-15 88.2 123 40.7
Pp3c7_9260 Physcomitrium patens HOM05D000604 ORTHO05D004856 2.3e-15 87.8 307 28.0
unitig_37.g13055 Utricularia gibba HOM05D000604 ORTHO05D004856 2.3e-15 87.8 324 28.7
A10p08380 Brassica napus HOM05D000604 ORTHO05D028239 6.7e-15 86.3 101 55.4
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 8.8e-15 85.9 552 25.4
A10p08390 Brassica napus HOM05D000604 ORTHO05D028239 8.8e-15 85.9 101 54.5
AUR62026050 Chenopodium quinoa HOM05D000604 ORTHO05D004856 1.1e-14 85.5 317 27.8
AUR62006166 Chenopodium quinoa HOM05D000604 ORTHO05D004856 4.3e-14 83.6 267 30.3
CDE05G2931 Ceratophyllum demersum HOM05D000604 ORTHO05D004856 1.3e-13 82.0 148 37.2
Migut.O00466 Erythranthe guttata HOM05D000604 ORTHO05D004856 2.2e-13 81.3 254 29.5
SHI01960 Sapria himalayana HOM05D000604 ORTHO05D004856 3.7e-13 80.5 456 24.3
Cre16.g685200 Chlamydomonas reinhardtii HOM05D000604 ORTHO05D004856 6.3e-13 79.7 104 44.2
MCO07G708 Micromonas commoda HOM05D000604 ORTHO05D004856 8.2e-13 79.3 77 48.1
Oeu014816.1 Olea europaea HOM05D000604 ORTHO05D004856 8.2e-13 79.3 525 23.8
TPR.G31111 Trifolium pratense HOM05D000604 ORTHO05D004856 1.4e-12 78.6 77 54.5
HanXRQChr13g0402141 Helianthus annuus HOM05D000604 ORTHO05D004856 3.1e-12 77.4 67 56.7
MD04G1088400 Malus domestica HOM05D000604 ORTHO05D004856 3.8e-10 70.5 63 57.1
AagrBONN_evm.TU.Sc2ySwM_117.1847 Anthoceros agrestis HOM05D000604 ORTHO05D004856 1.4e-09 68.6 142 33.8
Nn1g08454 Nelumbo nucifera HOM05D000604 ORTHO05D004856 4.7e-08 63.5 386 24.1
Potri.001G081000 Populus trichocarpa HOM05D000604 ORTHO05D004856 6.1e-08 63.2 121 38.0
Medtr7g096430 Medicago truncatula HOM05D000604 ORTHO05D028239 1.8e-07 61.6 74 48.6
Medtr7g094670 Medicago truncatula HOM05D001476 ORTHO05D002681 8.8e-07 59.3 476 25.8
CARHR226420 Cardamine hirsuta HOM05D000604 ORTHO05D116023 4.4e-06 57.0 56 67.9
CBR_g29474 Chara braunii HOM05D004650 ORTHO05D005715 4.4e-06 57.0 103 35.0
Hund13011 Selenicereus undatus HOM05D000604 ORTHO05D004856 4.4e-06 57.0 42 59.5
PRCOL_00005574 Prasinoderma coloniale HOM05D000604 ORTHO05D004856 5.7e-06 56.6 140 32.1
MD05G1258600 Malus domestica HOM05D000604 ORTHO05D004856 9.7e-06 55.8 116 38.8


User provided reference genes

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