Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 4.8e-91 337.8 169 100.0
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 3.4e-89 331.6 169 97.6
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 1.0e-88 330.1 169 97.0
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 4.9e-88 327.8 169 95.9
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.4e-87 326.2 167 97.0
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 2.5e-87 325.5 169 95.9
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 2.5e-87 325.5 169 95.9
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 9.3e-87 323.6 169 95.9
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 1.6e-86 322.8 169 94.1
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.0e-85 318.5 169 93.5
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 5.1e-85 317.8 169 92.3
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 9.7e-84 313.5 169 93.5
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 2.2e-83 312.4 169 92.9
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 8.5e-80 300.4 169 88.8
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 3.6e-78 295.0 167 86.8
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 2.3e-77 292.4 169 84.0
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 3.0e-77 292.0 150 95.3
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 5.1e-77 291.2 167 85.0
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 8.8e-77 290.4 169 84.6
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 8.8e-77 290.4 169 85.8
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.1e-76 290.0 169 84.6
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 1.1e-76 290.0 169 84.0
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 1.1e-76 290.0 169 84.0
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 1.5e-76 289.7 169 84.0
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 1.5e-76 289.7 169 84.0
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 3.3e-76 288.5 169 83.4
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 4.3e-76 288.1 169 83.4
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 4.3e-76 288.1 168 85.1
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 5.7e-76 287.7 168 84.5
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 7.4e-76 287.3 169 84.6
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 9.7e-76 287.0 169 83.4
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 1.7e-75 286.2 169 82.8
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 1.7e-75 286.2 167 83.2
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 2.2e-75 285.8 166 82.5
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 3.7e-75 285.0 169 81.7
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 6.3e-75 284.3 169 84.0
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 8.2e-75 283.9 167 80.8
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 1.1e-74 283.5 169 81.7
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.1e-74 283.5 169 83.4
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 1.4e-74 283.1 169 80.5
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.4e-74 283.1 169 82.8
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.8e-74 282.7 169 81.7
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 1.8e-74 282.7 169 82.2
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 1.8e-74 282.7 169 82.2
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 2.4e-74 282.3 169 81.1
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.4e-74 282.3 168 82.7
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.4e-74 282.3 168 82.7
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 3.1e-74 282.0 169 79.3
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 81.7
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 4.1e-74 281.6 169 79.9
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 5.3e-74 281.2 169 80.5
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 6.9e-74 280.8 169 79.9
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 9.1e-74 280.4 169 79.3
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 9.1e-74 280.4 169 79.3
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.2e-73 280.0 149 92.6
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 1.2e-73 280.0 169 79.3
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.2e-73 280.0 168 82.1
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 1.5e-73 279.6 169 81.7
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 1.5e-73 279.6 166 81.3
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-73 279.6 166 81.3
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.5e-73 279.6 166 81.3
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 1.5e-73 279.6 166 81.3
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 2.0e-73 279.3 168 81.0
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 2.0e-73 279.3 169 79.3
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.0e-73 279.3 167 83.2
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.6e-73 278.9 166 81.3
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 4.5e-73 278.1 169 81.7
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 5.9e-73 277.7 169 78.7
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 1.0e-72 276.9 169 81.1
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 1.7e-72 276.2 169 79.3
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 2.9e-72 275.4 169 80.5
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 5.0e-72 274.6 166 79.5
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 1.1e-71 273.5 169 79.3
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 1.9e-71 272.7 169 78.7
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 4.2e-71 271.6 169 78.1
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 5.5e-71 271.2 166 78.9
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 7.2e-71 270.8 170 85.3
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.2e-70 270.0 192 71.9
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 2.1e-70 269.2 169 77.5
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 2.1e-70 269.2 186 74.2
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 3.6e-70 268.5 152 88.8
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 4.7e-70 268.1 197 69.0
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 4.7e-70 268.1 182 73.6
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 6.1e-70 267.7 149 88.6
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 6.1e-70 267.7 169 78.7
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 7.9e-70 267.3 183 73.2
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.0e-69 266.9 183 73.2
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.0e-69 266.9 183 73.2
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 1.4e-69 266.5 169 75.1
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 3.9e-69 265.0 160 84.4
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 3.9e-69 265.0 149 85.9
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 6.7e-69 264.2 169 77.5
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 8.8e-69 263.8 149 85.2
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 8.8e-69 263.8 167 76.6
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.5e-68 263.1 169 79.3
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 4.4e-68 261.5 150 84.7
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 5.7e-68 261.2 167 78.4
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 7.4e-68 260.8 169 72.2
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 3.7e-67 258.5 214 65.0
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 3.7e-67 258.5 207 64.7
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 3.7e-67 258.5 148 83.1
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 4.8e-67 258.1 168 80.4
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 6.3e-67 257.7 149 83.2
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.8e-66 256.1 149 82.6
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 3.1e-66 255.4 149 79.9
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 3.1e-66 255.4 167 70.7
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 4.1e-66 255.0 143 85.3
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 9.1e-66 253.8 132 96.2
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.0e-64 250.4 169 74.0
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 1.3e-64 250.0 158 79.1
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 3.8e-64 248.4 158 79.1
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 6.5e-64 247.7 145 81.4
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.1e-63 246.9 153 80.4
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.4e-63 246.5 147 81.0
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.2e-62 243.4 167 68.9
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 1.6e-62 243.0 168 71.4
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 2.7e-62 242.3 166 72.3
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 4.7e-62 241.5 153 75.8
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 3.0e-61 238.8 177 70.6
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 3.9e-61 238.4 239 56.9
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 1.7e-59 233.0 168 67.3
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 6.3e-59 231.1 148 83.1
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 2.0e-57 226.1 126 83.3
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 2.9e-56 222.2 156 73.1
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 5.5e-55 218.0 167 64.7
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 9.4e-55 217.2 124 82.3
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 2.7e-54 215.7 169 68.0
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 1.7e-51 206.5 123 76.4
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 4.8e-51 204.9 191 56.0
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 4.1e-50 201.8 124 83.1
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 2.7e-49 199.1 124 81.5
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 7.7e-49 197.6 157 61.1
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 1.0e-48 197.2 166 63.9
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 2.5e-47 192.6 121 79.3
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-47 192.2 121 78.5
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 3.2e-47 192.2 121 78.5
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 7.2e-47 191.0 121 77.7
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 9.4e-47 190.7 124 79.8
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 6.1e-46 188.0 141 68.8
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 6.1e-46 188.0 118 78.8
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 5.7e-44 181.4 145 69.0
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 9.1e-42 174.1 136 61.0
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 1.0e-37 160.6 90 81.1
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.4e-37 160.2 106 76.4
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 2.8e-35 152.5 90 81.1
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 3.7e-35 152.1 94 83.0
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 4.7e-30 135.2 82 84.1
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 4.7e-30 135.2 83 80.7
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.5e-28 130.2 78 79.5
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 2.2e-27 126.3 112 57.1
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 3.2e-26 122.5 98 63.3
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.6e-25 120.2 74 82.4
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 6.0e-25 118.2 73 82.2
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.0e-24 117.5 99 56.6
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 2.1e-22 109.8 64 85.9
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 2.8e-22 109.4 102 57.8
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.7e-22 108.6 75 73.3
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.4e-20 102.4 65 83.1
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 6.4e-19 98.2 138 39.1
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 1.0e-16 90.9 156 36.5
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 8.1e-14 81.3 44 81.8
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 1.4e-13 80.5 108 50.0
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 4.0e-13 79.0 49 79.6
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 4.0e-13 79.0 49 79.6
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 5.8e-12 75.1 166 31.3
FAN04G2473 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.7e-09 66.2 38 73.7


User provided reference genes

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