Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G39820 Arabidopsis thaliana HOM05D006521 ORTHO05D008087 9.8e-242 839.7 428 100.0
AL7G12040 Arabidopsis lyrata HOM05D006521 ORTHO05D008087 3.8e-217 758.1 421 93.1
Carub.0007s0173 Capsella rubella HOM05D006521 ORTHO05D008087 3.3e-213 745.0 419 91.9
CARHR246880 Cardamine hirsuta HOM05D006521 ORTHO05D008087 8.1e-212 740.3 413 90.6
Sp7g36070 Schrenkiella parvula HOM05D006521 ORTHO05D008087 1.6e-207 726.1 416 89.2
Thhalv10025314m.g Eutrema salsugineum HOM05D006521 ORTHO05D008087 5.1e-206 721.1 419 87.1
Aa31LG6G15450 Aethionema arabicum HOM05D006521 ORTHO05D008087 6.7e-190 667.5 421 81.0
BolC3t20094H Brassica oleracea HOM05D006521 ORTHO05D008087 1.7e-185 652.9 411 81.0
C03p78340 Brassica napus HOM05D006521 ORTHO05D008087 3.8e-185 651.7 411 81.0
A08p23330 Brassica napus HOM05D006521 ORTHO05D008087 9.3e-184 647.1 411 80.3
BraA08t34287Z Brassica rapa HOM05D006521 ORTHO05D008087 9.3e-184 647.1 411 80.3
THA.LOC104807700 Tarenaya hassleriana HOM05D006521 ORTHO05D008087 4.5e-178 628.2 415 76.1
THA.LOC104824871 Tarenaya hassleriana HOM05D006521 ORTHO05D008087 1.7e-177 626.3 403 76.9
BcaNung05326 Brassica carinata HOM05D006521 ORTHO05D008087 4.4e-149 531.9 352 77.3
Cpa.g.sc20.228 Carica papaya HOM05D006521 ORTHO05D008087 3.7e-148 528.9 373 68.1
Duzib147G0857 Durio zibethinus HOM05D006521 ORTHO05D008087 1.3e-145 520.4 357 69.5
Thecc.01G106200 Theobroma cacao HOM05D006521 ORTHO05D008087 4.0e-142 508.8 351 67.5
Duzib264G0874 Durio zibethinus HOM05D006521 ORTHO05D008087 5.7e-141 505.0 351 67.5
Gorai.007G061700 Gossypium raimondii HOM05D006521 ORTHO05D008087 7.5e-141 504.6 357 66.1
Lalb_Chr11g0075241 Lupinus albus HOM05D006521 ORTHO05D008087 9.8e-141 504.2 350 66.9
ClCG01G018970 Citrullus lanatus HOM05D006521 ORTHO05D008087 1.8e-139 500.0 377 62.3
Ca_16545_v3 Cicer arietinum L. HOM05D006521 ORTHO05D008087 3.1e-139 499.2 347 68.0
MELO3C007776.2 Cucumis melo HOM05D006521 ORTHO05D008087 3.1e-139 499.2 370 63.5
CANSAT01G1058 Cannabis sativa HOM05D006521 ORTHO05D008087 9.1e-139 497.7 361 66.5
arahy.Tifrunner.gnm1.ann1.2NAN3W Arachis hypogaea HOM05D006521 ORTHO05D008087 2.0e-138 496.5 353 66.9
arahy.Tifrunner.gnm1.ann1.IK9JFE Arachis hypogaea HOM05D006521 ORTHO05D008087 2.0e-138 496.5 353 66.9
Glyma.18G019200 Glycine max HOM05D006521 ORTHO05D008087 3.5e-138 495.7 348 68.1
Medtr3g087760 Medicago truncatula HOM05D006521 ORTHO05D008087 5.9e-138 495.0 347 67.4
Ciclev10025891m.g Citrus clementina HOM05D006521 ORTHO05D008087 7.7e-138 494.6 350 67.7
CsaV3_6G045650 Cucumis sativus L. HOM05D006521 ORTHO05D008087 2.9e-137 492.7 349 66.2
TAR376G0467 Trochodendron aralioides HOM05D006521 ORTHO05D008087 3.8e-137 492.3 360 65.6
Atru.chr4.229 Acer truncatum HOM05D006521 ORTHO05D008087 6.6e-137 491.5 381 64.8
Lj6g0010661 Lotus japonicus HOM05D006521 ORTHO05D008087 8.6e-137 491.1 344 66.9
Manes.12G138400 Manihot esculenta HOM05D006521 ORTHO05D008087 2.5e-136 489.6 362 66.0
Phvul.001G250400 Phaseolus vulgaris HOM05D006521 ORTHO05D008087 2.5e-136 489.6 349 67.9
VMungo1383G3636 Vigna mungo HOM05D006521 ORTHO05D008087 1.2e-135 487.3 361 65.7
Glyma.11G238100 Glycine max HOM05D006521 ORTHO05D008087 2.8e-135 486.1 349 67.3
TWI74G1358 Tripterygium wilfordii HOM05D006521 ORTHO05D008087 3.6e-135 485.7 362 63.5
Gorai.008G103700 Gossypium raimondii HOM05D006521 ORTHO05D008087 4.7e-135 485.3 351 65.8
Sed0002886 Sechium edule HOM05D006521 ORTHO05D008087 2.3e-134 483.0 387 60.5
Psat5g088760 Pisum sativum HOM05D006521 ORTHO05D008087 1.2e-133 480.7 345 66.1
TWI77G0511 Tripterygium wilfordii HOM05D006521 ORTHO05D008087 1.3e-132 477.2 360 63.9
Sed0013283 Sechium edule HOM05D006521 ORTHO05D008087 9.2e-131 471.1 401 57.4
Dinv00937 Davidia involucrata HOM05D006521 ORTHO05D008087 2.0e-130 469.9 354 64.7
Dinv16313 Davidia involucrata HOM05D006521 ORTHO05D008087 1.0e-129 467.6 354 64.4
TPR.G22881 Trifolium pratense HOM05D006521 ORTHO05D008087 1.0e-129 467.6 375 61.3
Eucgr.I00394 Eucalyptus grandis HOM05D006521 ORTHO05D008087 2.9e-129 466.1 356 62.4
Prupe.3G102100 Prunus persica HOM05D006521 ORTHO05D008087 3.9e-129 465.7 351 64.7
Hma1.2p1_0011F.1_g007170 Hydrangea macrophylla HOM05D006521 ORTHO05D008087 3.3e-128 462.6 356 64.3
FAN19G2752 Fragaria x ananassa HOM05D006521 ORTHO05D008087 5.6e-128 461.8 361 62.6
FvH4_1g21530 Fragaria vesca HOM05D006521 ORTHO05D008087 1.6e-127 460.3 361 62.3
RcHm_v2.0_Chr2g0115391 Rosa chinensis HOM05D006521 ORTHO05D008087 2.1e-127 459.9 370 61.1
PGR004G2411 Punica granatum HOM05D006521 ORTHO05D008087 2.8e-127 459.5 378 60.3
PSO447G0171 Papaver somniferum HOM05D006521 ORTHO05D008087 4.7e-127 458.8 357 60.8
FAN28G0591 Fragaria x ananassa HOM05D006521 ORTHO05D008087 8.0e-127 458.0 361 62.0
QL06p050323 Quercus lobata HOM05D006521 ORTHO05D008087 8.0e-127 458.0 371 60.6
FAN23G2501 Fragaria x ananassa HOM05D006521 ORTHO05D008087 2.3e-126 456.4 361 62.0
PSO210G2459 Papaver somniferum HOM05D006521 ORTHO05D008087 4.0e-126 455.7 357 60.5
Aqoxy5G01962 Aquilegia oxysepala HOM05D006521 ORTHO05D008087 1.5e-125 453.8 360 60.3
Potri.005G079300 Populus trichocarpa HOM05D006521 ORTHO05D008087 2.6e-125 453.0 349 63.3
Sabra05G0065200 Salix brachista HOM05D006521 ORTHO05D004292 7.3e-120 434.9 357 60.2
CiPaw.03G138700 Carya illinoinensis HOM05D006521 ORTHO05D008087 2.1e-119 433.3 359 58.8
Sc16g0005450 Simmondsia chinensis HOM05D006521 ORTHO05D008087 4.7e-119 432.2 368 59.0
HanXRQChr16g0527921 Helianthus annuus HOM05D006521 ORTHO05D008087 5.2e-118 428.7 350 61.1
Cc07_g15580 Coffea canephora HOM05D006521 ORTHO05D008087 8.9e-118 427.9 395 56.7
SHI11594 Sapria himalayana HOM05D006521 ORTHO05D008087 8.9e-118 427.9 353 58.6
Haze_24978 Corylus avellana HOM05D006521 ORTHO05D008087 1.2e-117 427.6 348 59.8
Rhsim10G0157900 Rhododendron simsii HOM05D006521 ORTHO05D008087 4.4e-117 425.6 375 56.0
C01p00850 Brassica napus HOM05D006521 ORTHO05D008087 5.8e-117 425.2 390 62.1
AUR62002034 Chenopodium quinoa HOM05D006521 ORTHO05D008087 7.5e-117 424.9 366 57.9
AUR62003763 Chenopodium quinoa HOM05D006521 ORTHO05D008087 7.5e-117 424.9 359 58.5
Lsat_1_v5_gn_4_21220 Lactuca sativa HOM05D006521 ORTHO05D008087 1.7e-116 423.7 380 57.9
SGA_v2.0_scaffold2G01323 Striga asiatica HOM05D006521 ORTHO05D008087 2.9e-116 422.9 394 55.6
Ah.02g122760 Amaranthus hybridus HOM05D006521 ORTHO05D008087 5.4e-115 418.7 353 57.5
ECA234G2647 Erigeron canadensis HOM05D006521 ORTHO05D008087 5.4e-115 418.7 362 58.6
SalBow3G0008 Salvia bowleyana HOM05D006521 ORTHO05D008087 7.0e-115 418.3 367 58.0
Oeu053565.1 Olea europaea HOM05D006521 ORTHO05D008087 1.7e-113 413.7 361 57.3
PGSC0003DMG400021832 Solanum tuberosum HOM05D006521 ORTHO05D008087 8.6e-113 411.4 394 54.3
Nitab4.5_0000715g0180 Nicotiana tabacum HOM05D006521 ORTHO05D008087 1.5e-112 410.6 380 56.3
Ah.02g120360 Amaranthus hybridus HOM05D006521 ORTHO05D008087 2.5e-112 409.8 354 56.8
Migut.H02388 Erythranthe guttata HOM05D006521 ORTHO05D008087 3.3e-112 409.5 369 55.8
Sopen05g030360 Solanum pennellii HOM05D006521 ORTHO05D008087 4.3e-112 409.1 362 57.2
Lsat_1_v5_gn_2_67800 Lactuca sativa HOM05D006521 ORTHO05D008087 7.3e-112 408.3 348 60.3
Solyc05g051840.1 Solanum lycopersicum HOM05D006521 ORTHO05D008087 9.5e-112 407.9 394 54.3
unitig_32.g11814 Utricularia gibba HOM05D006521 ORTHO05D008087 3.1e-110 402.9 356 56.7
Cfa002704 Carpinus fangiana HOM05D006521 ORTHO05D008087 8.9e-110 401.4 348 56.9
Hund13498 Selenicereus undatus HOM05D006521 ORTHO05D008087 1.2e-109 401.0 372 53.8
HanXRQChr15g0471711 Helianthus annuus HOM05D006521 ORTHO05D008087 4.4e-109 399.1 344 59.0
CAN.G1494.2 Capsicum annuum HOM05D006521 ORTHO05D008087 7.5e-109 398.3 384 53.4
DCAR_011503 Daucus carota HOM05D006521 ORTHO05D008087 1.7e-108 397.1 369 55.8
Nn1g05268 Nelumbo nucifera HOM05D006521 ORTHO05D008087 1.2e-106 391.0 309 59.9
HPP92_016137 Vanilla planifolia HOM05D006521 ORTHO05D008087 5.6e-104 382.1 394 52.5
Lj4A881T25 Lonicera japonica HOM05D006521 ORTHO05D008087 4.7e-103 379.0 300 65.0
A01p00740 Brassica napus HOM05D006521 ORTHO05D008087 9.9e-101 371.3 283 71.4
ATR0789G153 Amborella trichopoda HOM05D006521 ORTHO05D008087 7.1e-99 365.2 473 42.9
CDE10G1235 Ceratophyllum demersum HOM05D006521 ORTHO05D008087 1.2e-98 364.4 346 52.6
Atru.chr1.3715 Acer truncatum HOM05D006521 ORTHO05D008087 2.8e-95 353.2 370 51.9
Lj4A883T21 Lonicera japonica HOM05D006521 ORTHO05D008087 4.8e-95 352.4 407 49.4
Nitab4.5_0005597g0010 Nicotiana tabacum HOM05D006521 ORTHO05D008087 6.2e-95 352.1 378 51.1
COL.COLO4_09911 Corchorus olitorius HOM05D006521 ORTHO05D008087 1.4e-91 340.9 358 50.8
Actinidia36602 Actinidia chinensis HOM05D006521 ORTHO05D008087 4.6e-90 335.9 302 56.3
SEGI_26188 Sequoiadendron giganteum HOM05D006521 ORTHO05D008087 4.3e-80 302.8 567 33.3
SMO353G0213 Selaginella moellendorffii HOM05D006521 ORTHO05D008087 9.3e-75 285.0 344 42.4
AagrBONN_evm.TU.Sc2ySwM_368.767 Anthoceros agrestis HOM05D006521 ORTHO05D008087 1.1e-72 278.1 463 36.3
EL10Ac6g15070 Beta vulgaris HOM05D006521 ORTHO05D008087 9.0e-70 268.5 233 57.1
Os02g0550400 Oryza sativa ssp. japonica HOM05D006521 ORTHO05D008087 1.1e-67 261.5 340 45.0
Pp3c22_3810 Physcomitrium patens HOM05D006521 ORTHO05D008087 4.6e-66 256.1 408 35.5
Mapoly0165s0018 Marchantia polymorpha HOM05D006521 ORTHO05D008087 2.3e-65 253.8 503 34.0
Pp3c19_5060 Physcomitrium patens HOM05D006521 ORTHO05D008087 6.7e-65 252.3 471 33.1
Pp3c10_9400 Physcomitrium patens HOM05D006521 ORTHO05D008087 5.0e-60 236.1 451 31.3
Atru.chr1.3697 Acer truncatum HOM05D006521 ORTHO05D008087 4.2e-59 233.0 151 74.8
ECA238G1388 Erigeron canadensis HOM05D001700 ORTHO05D002131 5.5e-59 232.6 161 68.3
ECA238G2228 Erigeron canadensis HOM05D006521 ORTHO05D008087 1.6e-58 231.1 159 68.6
Pp3c14_5890 Physcomitrium patens HOM05D006521 ORTHO05D008087 1.8e-57 227.6 382 33.2
BcaNung00904 Brassica carinata HOM05D006521 ORTHO05D008087 3.4e-53 213.4 116 89.7
Peaxi162Scf00295g00033 Petunia axillaris HOM05D006521 ORTHO05D008087 6.3e-47 192.6 185 55.1
HanXRQChr10g0288811 Helianthus annuus HOM05D006521 ORTHO05D008087 1.7e-39 167.9 105 78.1
CBR_g34484 Chara braunii HOM05D006521 ORTHO05D008087 1.1e-38 165.2 248 37.1
TAR636G0192 Trochodendron aralioides HOM05D006521 ORTHO05D008087 3.5e-29 133.7 126 52.4
FAN13G3020 Fragaria x ananassa HOM05D005489 ORTHO05D006629 1.4e-25 121.7 112 50.9
PRCOL_00001846 Prasinoderma coloniale HOM05D006521 ORTHO05D008087 1.6e-13 81.6 272 28.3
GSVIVG01022164001 Vitis vinifera HOM05D006521 ORTHO05D008087 2.7e-13 80.9 71 53.5
Atru.chr1.3698 Acer truncatum HOM05D006521 ORTHO05D008087 5.2e-09 66.6 84 47.6
CDE10G1372 Ceratophyllum demersum HOM05D006521 ORTHO05D008087 5.2e-09 66.6 82 46.3


User provided reference genes

Program Settings