Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G36105 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 1.2e-122 443.4 246 100.0
Sp7g33880 Schrenkiella parvula HOM05D001533 ORTHO05D005122 9.2e-67 257.7 283 60.4
Thhalv10025665m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 3.8e-65 252.3 289 59.2
Carub.0007s0413 Capsella rubella HOM05D001533 ORTHO05D005122 8.3e-60 234.6 280 57.9
Sp3g31420 Schrenkiella parvula HOM05D001533 ORTHO05D005122 1.1e-56 224.2 285 54.7
AL3G51060 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 3.6e-55 219.2 289 53.6
CARHR108480 Cardamine hirsuta HOM05D001533 ORTHO05D005122 5.2e-54 215.3 275 56.0
Aa31LG6G13050 Aethionema arabicum HOM05D001533 ORTHO05D005122 7.5e-53 211.5 292 51.7
Carub.0003s3213 Capsella rubella HOM05D001533 ORTHO05D005122 4.9e-52 208.8 287 53.0
AT2G17990 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 8.3e-52 208.0 290 51.7
Thhalv10022777m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 1.9e-51 206.8 279 54.1
BcaB08g34783 Brassica carinata HOM05D001533 ORTHO05D005122 6.0e-50 201.8 269 53.5
A07p02680 Brassica napus HOM05D001533 ORTHO05D005122 1.0e-49 201.1 277 52.0
BraA07t28064Z Brassica rapa HOM05D001533 ORTHO05D005122 1.0e-49 201.1 277 52.0
C07p04980 Brassica napus HOM05D001533 ORTHO05D005122 1.3e-49 200.7 277 52.3
THA.LOC104804260 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 1.7e-49 200.3 317 47.9
BcaC06g36351 Brassica carinata HOM05D001533 ORTHO05D005122 5.0e-49 198.7 277 52.0
THA.LOC104807492 Tarenaya hassleriana HOM05D001533 ORTHO05D005122 6.6e-49 198.4 304 49.0
Aa31LG8G15170 Aethionema arabicum HOM05D001533 ORTHO05D005122 8.1e-47 191.4 292 49.3
QL06p033501 Quercus lobata HOM05D001533 ORTHO05D005122 8.9e-46 188.0 303 46.5
A06p33470 Brassica napus HOM05D001533 ORTHO05D005122 2.6e-45 186.4 269 51.3
Cpa.g.sc6.238 Carica papaya HOM05D001533 ORTHO05D005122 3.4e-45 186.0 304 45.4
Ciclev10025997m.g Citrus clementina HOM05D001533 ORTHO05D005122 4.4e-45 185.7 297 47.1
Prupe.7G167200 Prunus persica HOM05D001533 ORTHO05D005122 7.5e-45 184.9 304 45.7
TWI09G0584 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 7.5e-45 184.9 304 45.7
C01p02930 Brassica napus HOM05D001533 ORTHO05D024397 9.8e-45 184.5 269 52.8
AL6G43540 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 4.9e-44 182.2 272 51.1
BraA06t26280Z Brassica rapa HOM05D001533 ORTHO05D005122 4.9e-44 182.2 264 51.1
MD02G1133400 Malus domestica HOM05D001533 ORTHO05D005122 4.9e-44 182.2 304 45.1
Rhsim08G0034200 Rhododendron simsii HOM05D001533 ORTHO05D005122 4.9e-44 182.2 306 45.8
BolC3t18147H Brassica oleracea HOM05D001533 ORTHO05D005122 1.4e-43 180.6 264 51.5
COL.COLO4_21923 Corchorus olitorius HOM05D001533 ORTHO05D005122 1.4e-43 180.6 305 45.2
RcHm_v2.0_Chr2g0099581 Rosa chinensis HOM05D001533 ORTHO05D005122 1.4e-43 180.6 297 43.8
Duzib187G1725 Durio zibethinus HOM05D001533 ORTHO05D005122 1.9e-43 180.3 304 43.4
CAN.G893.6 Capsicum annuum HOM05D001533 ORTHO05D005122 3.2e-43 179.5 304 44.4
Peaxi162Scf00083g00714 Petunia axillaris HOM05D001533 ORTHO05D005122 7.1e-43 178.3 304 44.4
Thecc.01G020200 Theobroma cacao HOM05D001533 ORTHO05D005122 7.1e-43 178.3 304 44.1
FAN26G0519 Fragaria x ananassa HOM05D001533 ORTHO05D005122 2.7e-42 176.4 304 41.4
MELO3C016393.2 Cucumis melo HOM05D001533 ORTHO05D005122 4.6e-42 175.6 304 44.7
Glyma.02G049100 Glycine max HOM05D001533 ORTHO05D005122 4.6e-42 175.6 304 44.4
Solyc02g083990.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 4.6e-42 175.6 304 43.8
CsaV3_4G005560 Cucumis sativus L. HOM05D001533 ORTHO05D005122 7.8e-42 174.9 313 44.1
FAN19G0503 Fragaria x ananassa HOM05D001533 ORTHO05D005122 7.8e-42 174.9 304 41.4
TWI53G2031 Tripterygium wilfordii HOM05D001533 ORTHO05D005122 7.8e-42 174.9 304 45.1
FvH4_1g11960 Fragaria vesca HOM05D001533 ORTHO05D005122 1.0e-41 174.5 304 41.4
Glyma.01G166700 Glycine max HOM05D001533 ORTHO05D005122 2.3e-41 173.3 304 43.4
Sopen02g028790 Solanum pennellii HOM05D001533 ORTHO05D005122 2.3e-41 173.3 304 43.4
vmacro18418 Vaccinium macrocarpon HOM05D001533 ORTHO05D005122 3.0e-41 172.9 297 44.1
BolC1t00279H Brassica oleracea HOM05D001533 ORTHO05D024397 3.9e-41 172.6 275 51.3
FAN23G2041 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.9e-41 172.6 304 41.1
FAN28G1062 Fragaria x ananassa HOM05D001533 ORTHO05D005122 3.9e-41 172.6 304 41.1
Nitab4.5_0006286g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 3.9e-41 172.6 304 43.8
Cc00_g26600 Coffea canephora HOM05D001533 ORTHO05D005122 5.1e-41 172.2 304 44.1
Phvul.002G109200 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 5.1e-41 172.2 304 43.4
Solyc03g033580.3 Solanum lycopersicum HOM05D001533 ORTHO05D005122 5.1e-41 172.2 304 43.8
Sabra05G0094600 Salix brachista HOM05D001533 ORTHO05D005122 6.6e-41 171.8 332 41.3
CAN.G1671.6 Capsicum annuum HOM05D001533 ORTHO05D005122 1.1e-40 171.0 297 43.4
CiPaw.07G057700 Carya illinoinensis HOM05D001533 ORTHO05D005122 1.1e-40 171.0 296 44.6
Sopen03g006360 Solanum pennellii HOM05D001533 ORTHO05D005122 1.9e-40 170.2 304 43.4
TAR381G0830 Trochodendron aralioides HOM05D001533 ORTHO05D005122 3.3e-40 169.5 304 41.1
VMungo0251G1454 Vigna mungo HOM05D001533 ORTHO05D005122 3.3e-40 169.5 297 43.8
Phvul.003G262700 Phaseolus vulgaris HOM05D001533 ORTHO05D005122 4.3e-40 169.1 297 43.1
Cfa006964 Carpinus fangiana HOM05D001533 ORTHO05D005122 5.6e-40 168.7 294 43.9
CiPaw.08G132200 Carya illinoinensis HOM05D001533 ORTHO05D005122 5.6e-40 168.7 304 42.8
Lj4g0002557 Lotus japonicus HOM05D001533 ORTHO05D005122 7.3e-40 168.3 304 43.1
Potri.005G115500 Populus trichocarpa HOM05D001533 ORTHO05D005122 7.3e-40 168.3 303 43.2
Actinidia31002 Actinidia chinensis HOM05D001533 ORTHO05D005122 9.5e-40 167.9 304 42.8
CSS0008566 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 9.5e-40 167.9 296 42.9
Nitab4.5_0000438g0040 Nicotiana tabacum HOM05D001533 ORTHO05D005122 9.5e-40 167.9 300 43.3
TPR.G30063 Trifolium pratense HOM05D001533 ORTHO05D005122 9.5e-40 167.9 304 42.8
Haze_03774 Corylus avellana HOM05D001533 ORTHO05D005122 1.2e-39 167.5 294 43.5
CARHR244500 Cardamine hirsuta HOM05D001533 ORTHO05D005122 2.1e-39 166.8 264 48.1
Oeu005320.1 Olea europaea HOM05D001533 ORTHO05D005122 3.6e-39 166.0 271 44.3
C03p58890 Brassica napus HOM05D001533 ORTHO05D005122 4.7e-39 165.6 251 49.8
VMungo1215G1138 Vigna mungo HOM05D001533 ORTHO05D005122 6.2e-39 165.2 304 42.1
Lj2g0008453 Lotus japonicus HOM05D001533 ORTHO05D005122 8.1e-39 164.9 302 41.7
Manes.01G145100 Manihot esculenta HOM05D001533 ORTHO05D005122 1.4e-38 164.1 297 43.1
Gorai.003G010300 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.8e-38 163.7 305 40.7
Potri.007G012600 Populus trichocarpa HOM05D001533 ORTHO05D005122 2.3e-38 163.3 303 42.6
Gohir.A02G170000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 4.0e-38 162.5 305 40.3
MSTRG.2705 Avicennia marina HOM05D001533 ORTHO05D005122 6.8e-38 161.8 303 40.6
arahy.Tifrunner.gnm1.ann1.H1V2NS Arachis hypogaea HOM05D001533 ORTHO05D005122 8.9e-38 161.4 286 41.6
PSO170G0469 Papaver somniferum HOM05D001533 ORTHO05D005122 8.9e-38 161.4 298 43.0
Gohir.D03G010000 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.2e-37 161.0 306 40.5
ClCG07G008590 Citrullus lanatus HOM05D001533 ORTHO05D005122 1.5e-37 160.6 294 43.2
Nn6g32353 Nelumbo nucifera HOM05D001533 ORTHO05D005122 1.5e-37 160.6 303 40.6
Lalb_Chr09g0321781 Lupinus albus HOM05D001533 ORTHO05D005122 3.4e-37 159.5 283 43.5
PSO700G0386 Papaver somniferum HOM05D001533 ORTHO05D005122 4.4e-37 159.1 298 41.9
Sed0027203 Sechium edule HOM05D001533 ORTHO05D005122 4.4e-37 159.1 296 42.2
CSS0030027 Camellia sinensis var. sinensis HOM05D001533 ORTHO05D005122 5.8e-37 158.7 282 44.0
Ca_22369_v3 Cicer arietinum L. HOM05D001533 ORTHO05D005122 7.6e-37 158.3 297 42.8
Duzib264G0112 Durio zibethinus HOM05D001533 ORTHO05D005122 7.6e-37 158.3 306 39.9
Eucgr.J02426 Eucalyptus grandis HOM05D001533 ORTHO05D005122 7.6e-37 158.3 306 41.2
Glyma.16G129200 Glycine max HOM05D001533 ORTHO05D005122 8.4e-36 154.8 303 41.3
Peaxi162Scf00034g00264 Petunia axillaris HOM05D001533 ORTHO05D005122 1.1e-35 154.5 305 39.3
Dinv33621 Davidia involucrata HOM05D001533 ORTHO05D005122 3.2e-35 152.9 305 40.0
Aa31LG1G14750 Aethionema arabicum HOM05D001533 ORTHO05D005122 5.4e-35 152.1 295 41.0
CANSAT80G2154 Cannabis sativa HOM05D001533 ORTHO05D005122 9.2e-35 151.4 297 42.8
AUR62043756 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.7e-34 149.8 305 39.7
AUR62044201 Chenopodium quinoa HOM05D001533 ORTHO05D005122 2.7e-34 149.8 305 39.7
GSVIVG01018794001 Vitis vinifera HOM05D001533 ORTHO05D005122 3.5e-34 149.4 273 42.9
Glyma.11G076600 Glycine max HOM05D001533 ORTHO05D005122 4.6e-34 149.1 304 41.1
Gohir.A11G176200 Gossypium hirsutum HOM05D001533 ORTHO05D005122 6.0e-34 148.7 307 38.4
AT5G66250 Arabidopsis thaliana HOM05D001533 ORTHO05D005122 7.8e-34 148.3 268 41.4
CANSAT01G1879 Cannabis sativa HOM05D001533 ORTHO05D005122 1.0e-33 147.9 300 40.3
Gorai.007G195800 Gossypium raimondii HOM05D001533 ORTHO05D005122 1.0e-33 147.9 298 38.6
AL8G45270 Arabidopsis lyrata HOM05D001533 ORTHO05D005122 1.3e-33 147.5 264 42.0
SGA_v2.0_scaffold137G35090 Striga asiatica HOM05D001533 ORTHO05D005122 1.3e-33 147.5 299 37.8
DCAR_016613 Daucus carota HOM05D001533 ORTHO05D005122 5.1e-33 145.6 297 40.1
TAR628G0959 Trochodendron aralioides HOM05D001533 ORTHO05D005122 1.1e-32 144.4 296 38.5
Gohir.D11G183900 Gossypium hirsutum HOM05D001533 ORTHO05D005122 1.5e-32 144.1 298 38.3
Lj2C466T13 Lonicera japonica HOM05D001533 ORTHO05D005122 4.3e-32 142.5 280 41.8
Nn5g29330 Nelumbo nucifera HOM05D001533 ORTHO05D005122 9.6e-32 141.4 305 37.4
Os06g0715400 Oryza sativa ssp. japonica HOM05D001533 ORTHO05D005122 9.6e-32 141.4 302 36.4
Lalb_Chr16g0377521 Lupinus albus HOM05D001533 ORTHO05D005122 2.1e-31 140.2 306 37.9
SalBow3G3323 Salvia bowleyana HOM05D001533 ORTHO05D005122 2.1e-31 140.2 352 35.8
Nitab4.5_0006119g0010 Nicotiana tabacum HOM05D001533 ORTHO05D005122 2.8e-31 139.8 301 38.5
Zm00001eb228040 Zea mays HOM05D001533 ORTHO05D005122 1.4e-30 137.5 303 37.6
Duzib147G0876 Durio zibethinus HOM05D001533 ORTHO05D005122 2.4e-30 136.7 303 37.3
BcaNung00764 Brassica carinata HOM05D001533 ORTHO05D024397 3.1e-30 136.3 273 44.3
AUR62007522 Chenopodium quinoa HOM05D001533 ORTHO05D005122 5.2e-30 135.6 298 37.2
Thhalv10004494m.g Eutrema salsugineum HOM05D001533 ORTHO05D005122 5.2e-30 135.6 282 38.7
A01p02640 Brassica napus HOM05D001533 ORTHO05D024397 1.5e-29 134.0 270 44.4
BraA01t00250Z Brassica rapa HOM05D001533 ORTHO05D024397 1.5e-29 134.0 270 44.4
EL10As8g23833 Beta vulgaris HOM05D001533 ORTHO05D005122 3.4e-29 132.9 305 38.0
MBI05_g43883_MAGBIO Magnolia biondii HOM05D001533 ORTHO05D005122 4.4e-29 132.5 314 35.7
Carub.0008s2824 Capsella rubella HOM05D001533 ORTHO05D005122 1.7e-28 130.6 259 40.2
Atru.chr3.790 Acer truncatum HOM05D001533 ORTHO05D005122 2.2e-28 130.2 304 36.2
Aqoxy6G02302 Aquilegia oxysepala HOM05D001533 ORTHO05D005122 2.2e-28 130.2 291 37.1
Sp2g30440 Schrenkiella parvula HOM05D001533 ORTHO05D005122 3.8e-28 129.4 291 37.8
ECA246G3074 Erigeron canadensis HOM05D001533 ORTHO05D005122 1.1e-27 127.9 298 36.2
Hma1.2p1_0743F.1_g211570 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 1.2e-26 124.4 298 37.2
Oeu035307.1 Olea europaea HOM05D001533 ORTHO05D005122 1.2e-26 124.4 298 36.6
A09p10100 Brassica napus HOM05D001533 ORTHO05D005122 2.1e-26 123.6 255 38.0
C09p11970 Brassica napus HOM05D001533 ORTHO05D005122 2.1e-26 123.6 255 38.0
Lsat_1_v5_gn_4_146800 Lactuca sativa HOM05D001533 ORTHO05D005122 4.6e-26 122.5 280 37.5
Manes.02G103600 Manihot esculenta HOM05D001533 ORTHO05D005122 7.8e-26 121.7 304 35.2
BcaNung04495 Brassica carinata HOM05D001533 ORTHO05D005122 3.0e-25 119.8 243 38.3
Lsat_1_v5_gn_4_146821 Lactuca sativa HOM05D001533 ORTHO05D005122 3.0e-25 119.8 278 36.7
Lalb_Chr05g0229891 Lupinus albus HOM05D001533 ORTHO05D005122 3.9e-25 119.4 303 35.0
CDE02G4489 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 5.1e-25 119.0 305 32.8
BraA09t36653Z Brassica rapa HOM05D001533 ORTHO05D005122 1.1e-24 117.9 267 36.3
Hund16484 Selenicereus undatus HOM05D001533 ORTHO05D005122 1.1e-24 117.9 305 35.1
BolC7t40899H Brassica oleracea HOM05D001533 ORTHO05D005122 1.5e-24 117.5 214 43.5
PGR119G1411 Punica granatum HOM05D001533 ORTHO05D005122 1.9e-24 117.1 291 35.7
BolC9t54085H Brassica oleracea HOM05D001533 ORTHO05D005122 2.5e-24 116.7 273 35.5
Lj4C217T16 Lonicera japonica HOM05D001533 ORTHO05D005122 2.1e-23 113.6 324 34.3
CDE04G1263 Ceratophyllum demersum HOM05D001533 ORTHO05D005122 2.8e-23 113.2 301 32.2
MD15G1246600 Malus domestica HOM05D001533 ORTHO05D005122 5.8e-21 105.5 120 58.3
Sc16g0002080 Simmondsia chinensis HOM05D001533 ORTHO05D005122 3.8e-20 102.8 306 34.0
Oeu048459.1 Olea europaea HOM05D001533 ORTHO05D005122 2.4e-19 100.1 207 39.1
PGSC0003DMG400003635 Solanum tuberosum HOM05D001533 ORTHO05D005122 1.3e-17 94.4 241 34.0
Hma1.2p1_2281F.1_g318810 Hydrangea macrophylla HOM05D001533 ORTHO05D005122 3.9e-17 92.8 241 36.1
Psat4g098560 Pisum sativum HOM05D001533 ORTHO05D005122 4.3e-16 89.4 272 31.2
ATR0680G362 Amborella trichopoda HOM05D001533 ORTHO05D005122 2.8e-15 86.7 290 31.4
arahy.Tifrunner.gnm1.ann1.JA3WP2 Arachis hypogaea HOM05D001533 ORTHO05D005122 2.8e-15 86.7 252 32.5
AUR62043805 Chenopodium quinoa HOM05D001533 ORTHO05D005122 1.1e-14 84.7 56 80.4
SMO358G0186 Selaginella moellendorffii HOM05D001533 ORTHO05D005122 9.0e-14 81.6 290 30.3
arahy.Tifrunner.gnm1.ann1.2HD0B7 Arachis hypogaea HOM05D001533 ORTHO05D019802 1.2e-13 81.3 53 79.2
CARHR281460 Cardamine hirsuta HOM05D001533 ORTHO05D019802 2.0e-13 80.5 56 73.2
Medtr8g076020 Medicago truncatula HOM05D001533 ORTHO05D005122 4.5e-13 79.3 304 31.2
Nitab4.5_0001959g0020 Nicotiana tabacum HOM05D001533 ORTHO05D005122 6.4e-12 75.5 234 32.1
unitig_899.g14709 Utricularia gibba HOM05D001533 ORTHO05D000063 2.4e-11 73.6 150 37.3
SEGI_32707 Sequoiadendron giganteum HOM05D001533 ORTHO05D005122 2.1e-10 70.5 298 26.8
A09p11640 Brassica napus HOM05D001533 ORTHO05D019802 3.0e-09 66.6 93 48.4
Ah.02g124450 Amaranthus hybridus HOM05D001533 ORTHO05D005122 1.1e-08 64.7 172 33.1
AagrBONN_evm.TU.Sc2ySwM_228.4945 Anthoceros agrestis HOM05D001533 ORTHO05D005122 1.1e-08 64.7 311 25.4
BraA09t36810Z Brassica rapa HOM05D001533 ORTHO05D019802 1.9e-08 63.9 83 54.2
CARHR281470 Cardamine hirsuta HOM05D001533 ORTHO05D005122 1.9e-08 63.9 195 31.3
HanXRQChr16g0531321 Helianthus annuus HOM05D001533 ORTHO05D005122 9.6e-08 61.6 161 31.1
BolC9t54258H Brassica oleracea HOM05D001533 ORTHO05D019802 4.8e-07 59.3 106 44.3


User provided reference genes

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