Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G35850 Arabidopsis thaliana HOM05D005949 ORTHO05D006945 8.4e-220 766.9 445 100.0
AL7G15220 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 6.2e-215 750.7 445 97.1
Carub.0007s0438 Capsella rubella HOM05D005949 ORTHO05D006945 1.2e-210 736.5 445 95.5
CARHR244220 Cardamine hirsuta HOM05D005949 ORTHO05D006945 1.0e-204 716.8 443 93.7
Thhalv10025194m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 1.1e-195 686.8 449 89.1
BolC1t00304H Brassica oleracea HOM05D005949 ORTHO05D006945 1.2e-194 683.3 446 88.1
C01p03190 Brassica napus HOM05D005949 ORTHO05D006945 2.1e-194 682.6 447 88.1
BraA01t00268Z Brassica rapa HOM05D005949 ORTHO05D006945 1.8e-193 679.5 446 87.4
BcaNung04881 Brassica carinata HOM05D005949 ORTHO05D006945 1.8e-190 669.5 447 87.7
A01p02870 Brassica napus HOM05D005949 ORTHO05D006945 9.1e-190 667.2 438 87.4
BcaNung00787 Brassica carinata HOM05D005949 ORTHO05D006945 2.6e-184 649.0 443 75.4
Aa31LG6G12800 Aethionema arabicum HOM05D005949 ORTHO05D006945 3.9e-177 625.2 445 82.5
THA.LOC104819734 Tarenaya hassleriana HOM05D005949 ORTHO05D006945 4.4e-160 568.5 445 75.5
Manes.17G110300 Manihot esculenta HOM05D005949 ORTHO05D006945 1.8e-145 520.0 439 59.9
TAR374G0398 Trochodendron aralioides HOM05D005949 ORTHO05D006945 2.4e-142 509.6 438 59.8
MSTRG.15541 Avicennia marina HOM05D005949 ORTHO05D006945 7.8e-141 504.6 436 58.3
ClCG10G013730 Citrullus lanatus HOM05D005949 ORTHO05D006945 2.5e-139 499.6 436 67.4
Nitab4.5_0001562g0070 Nicotiana tabacum HOM05D005949 ORTHO05D006945 2.5e-139 499.6 436 57.8
Nitab4.5_0006683g0100 Nicotiana tabacum HOM05D005949 ORTHO05D006945 2.8e-138 496.1 437 57.7
RhsimUnG0006400 Rhododendron simsii HOM05D005949 ORTHO05D006945 1.4e-137 493.8 441 58.3
RhsimUnG0087200 Rhododendron simsii HOM05D005949 ORTHO05D006945 1.4e-137 493.8 441 58.3
Ciclev10015245m.g Citrus clementina HOM05D005949 ORTHO05D006945 5.8e-136 488.4 433 58.0
CSS0029670 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 2.9e-135 486.1 433 57.7
Duzib264G1167 Durio zibethinus HOM05D005949 ORTHO05D006945 3.7e-135 485.7 441 56.2
CAN.G1235.24 Capsicum annuum HOM05D005949 ORTHO05D006945 1.9e-134 483.4 439 55.8
Sed0011104 Sechium edule HOM05D005949 ORTHO05D006945 4.1e-134 482.3 436 65.6
HanXRQChr15g0486811 Helianthus annuus HOM05D005949 ORTHO05D006945 1.6e-133 480.3 439 56.5
PGSC0003DMG400018653 Solanum tuberosum HOM05D005949 ORTHO05D006945 3.5e-133 479.2 435 55.6
Aqoxy5G03678 Aquilegia oxysepala HOM05D005949 ORTHO05D006945 4.6e-133 478.8 439 55.1
Thhalv10023015m.g Eutrema salsugineum HOM05D005949 ORTHO05D006945 2.3e-132 476.5 438 67.4
Nn2g12389 Nelumbo nucifera HOM05D005949 ORTHO05D006945 2.3e-132 476.5 438 62.1
GSVIVG01032367001 Vitis vinifera HOM05D005949 ORTHO05D006945 2.3e-132 476.5 444 60.1
Sopen01g054070 Solanum pennellii HOM05D005949 ORTHO05D006945 8.6e-132 474.6 435 54.9
Migut.K01417 Erythranthe guttata HOM05D005949 ORTHO05D006945 1.5e-131 473.8 437 63.2
Solyc01g112020.3 Solanum lycopersicum HOM05D005949 ORTHO05D006945 3.3e-131 472.6 435 54.9
Lsat_1_v5_gn_4_184520 Lactuca sativa HOM05D005949 ORTHO05D006945 5.6e-131 471.9 433 55.7
SGA_v2.0_scaffold47G17523 Striga asiatica HOM05D005949 ORTHO05D006945 5.6e-131 471.9 445 55.1
CiPaw.03G046600 Carya illinoinensis HOM05D005949 ORTHO05D006945 7.3e-131 471.5 444 64.4
Haze_14768 Corylus avellana HOM05D005949 ORTHO05D006945 2.8e-130 469.5 451 57.9
QL02p073821 Quercus lobata HOM05D005949 ORTHO05D006945 1.8e-129 466.8 444 58.1
Cfa007328 Carpinus fangiana HOM05D005949 ORTHO05D006945 6.8e-129 464.9 440 58.4
COL.COLO4_29188 Corchorus olitorius HOM05D005949 ORTHO05D006945 6.4e-127 458.4 443 57.8
ECA232G4961 Erigeron canadensis HOM05D005949 ORTHO05D006945 4.1e-126 455.7 450 52.2
MD17G1021300 Malus domestica HOM05D005949 ORTHO05D006945 4.6e-125 452.2 436 63.5
Gohir.D10G085800 Gossypium hirsutum HOM05D005949 ORTHO05D006945 7.8e-125 451.4 438 58.2
MD09G1021300 Malus domestica HOM05D005949 ORTHO05D006945 7.8e-125 451.4 438 62.6
Gorai.011G094000 Gossypium raimondii HOM05D005949 ORTHO05D006945 1.9e-123 446.8 439 58.1
Lj7C602T3 Lonicera japonica HOM05D005949 ORTHO05D006945 1.9e-123 446.8 458 52.4
CANSAT64G2213 Cannabis sativa HOM05D005949 ORTHO05D006945 2.5e-123 446.4 442 56.3
Glyma.05G115200 Glycine max HOM05D005949 ORTHO05D006945 5.6e-123 445.3 448 56.2
Lalb_Chr06g0174481 Lupinus albus HOM05D005949 ORTHO05D006945 5.6e-123 445.3 446 61.4
FAN09G2334 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.6e-122 443.7 441 53.5
RcHm_v2.0_Chr2g0173461 Rosa chinensis HOM05D005949 ORTHO05D006945 1.8e-121 440.3 449 63.0
Thecc.04G021200 Theobroma cacao HOM05D005949 ORTHO05D006945 2.4e-121 439.9 444 55.2
Glyma.19G052100 Glycine max HOM05D005949 ORTHO05D006945 8.9e-121 438.0 448 56.2
Gohir.A10G101600 Gossypium hirsutum HOM05D005949 ORTHO05D006945 1.2e-120 437.6 439 57.2
Cc09_g05780 Coffea canephora HOM05D005949 ORTHO05D006945 1.5e-120 437.2 440 62.3
Eucgr.J02262 Eucalyptus grandis HOM05D005949 ORTHO05D006945 2.0e-120 436.8 443 54.2
Prupe.3G295200 Prunus persica HOM05D005949 ORTHO05D006945 5.8e-120 435.3 436 61.9
Peaxi162Scf00420g00016 Petunia axillaris HOM05D005949 ORTHO05D006945 3.8e-119 432.6 438 53.0
PSO063G1157 Papaver somniferum HOM05D005949 ORTHO05D006945 1.6e-117 427.2 446 51.1
FAN05G2654 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.0e-116 424.5 439 62.2
Phvul.004G060400 Phaseolus vulgaris HOM05D005949 ORTHO05D006945 1.7e-116 423.7 447 52.8
arahy.Tifrunner.gnm1.ann1.4A4JE9 Arachis hypogaea HOM05D005949 ORTHO05D006945 3.0e-116 422.9 435 58.6
VMungo0464G1442 Vigna mungo HOM05D005949 ORTHO05D006945 3.9e-116 422.5 421 59.1
PSO754G0010 Papaver somniferum HOM05D005949 ORTHO05D006945 8.7e-116 421.4 446 50.9
EL10Ac6g14123 Beta vulgaris HOM05D005949 ORTHO05D006945 1.9e-115 420.2 490 47.3
Ca_04380_v3 Cicer arietinum L. HOM05D005949 ORTHO05D006945 2.5e-115 419.9 442 52.7
TPR.G16864 Trifolium pratense HOM05D005949 ORTHO05D006945 7.3e-115 418.3 442 53.4
FvH4_6g51990 Fragaria vesca HOM05D005949 ORTHO05D006945 1.6e-114 417.2 440 61.1
TWI12G1469 Tripterygium wilfordii HOM05D005949 ORTHO05D006945 3.6e-114 416.0 437 55.8
Lj2g0004695 Lotus japonicus HOM05D005949 ORTHO05D006945 1.4e-113 414.1 444 58.3
PGR083G1217 Punica granatum HOM05D005949 ORTHO05D006945 1.8e-113 413.7 446 52.9
Ah.02g128260 Amaranthus hybridus HOM05D005949 ORTHO05D006945 3.1e-113 412.9 442 48.2
FAN14G1023 Fragaria x ananassa HOM05D005949 ORTHO05D006945 3.1e-113 412.9 439 61.0
arahy.Tifrunner.gnm1.ann1.BK7H4N Arachis hypogaea HOM05D005949 ORTHO05D006945 1.5e-112 410.6 454 56.2
TPR.G8694 Trifolium pratense HOM05D005949 ORTHO05D006945 2.6e-112 409.8 438 53.0
FAN02G3213 Fragaria x ananassa HOM05D005949 ORTHO05D006945 1.7e-111 407.1 439 60.1
Medtr6g021740 Medicago truncatula HOM05D005949 ORTHO05D006945 4.9e-111 405.6 442 50.7
ATR0199G040 Amborella trichopoda HOM05D005949 ORTHO05D006945 6.4e-111 405.2 427 52.0
Potri.001G341400 Populus trichocarpa HOM05D005949 ORTHO05D006945 5.4e-110 402.1 440 59.8
Sabra16G0221400 Salix brachista HOM05D005949 ORTHO05D006945 9.3e-110 401.4 429 60.4
CsaV3_3G042930 Cucumis sativus L. HOM05D000631 ORTHO05D000524 3.5e-109 399.4 383 65.5
SEGI_30195 Sequoiadendron giganteum HOM05D005949 ORTHO05D006945 9.6e-107 391.3 410 60.5
HPP92_016937 Vanilla planifolia HOM05D005949 ORTHO05D006945 2.1e-106 390.2 432 49.5
AUR62043287 Chenopodium quinoa HOM05D005949 ORTHO05D006945 3.6e-106 389.4 410 49.5
MELO3C026595.2 Cucumis melo HOM05D005949 ORTHO05D006945 4.5e-104 382.5 373 63.0
unitig_88.g27782 Utricularia gibba HOM05D005949 ORTHO05D006945 9.3e-102 374.8 295 61.7
Atru.chr6.2442 Acer truncatum HOM05D005949 ORTHO05D006945 4.6e-101 372.5 277 65.7
Os05g0145600 Oryza sativa ssp. japonica HOM05D005949 ORTHO05D006945 1.8e-100 370.5 430 56.3
DCAR_021740 Daucus carota HOM05D005949 ORTHO05D006945 8.1e-98 361.7 440 46.8
Zm00001eb354320 Zea mays HOM05D005949 ORTHO05D006945 5.3e-97 359.0 443 54.6
Psat5g064960 Pisum sativum HOM05D005949 ORTHO05D006945 6.5e-95 352.1 287 58.5
Dinv25719 Davidia involucrata HOM05D005949 ORTHO05D006945 1.9e-94 350.5 327 60.9
AUR62028447 Chenopodium quinoa HOM05D005949 ORTHO05D006945 4.2e-94 349.4 351 49.9
Sc09g0007150 Simmondsia chinensis HOM05D005949 ORTHO05D006945 6.0e-93 345.5 367 52.9
Actinidia36133 Actinidia chinensis HOM05D005949 ORTHO05D006945 4.6e-85 319.3 303 72.3
vmacro05885 Vaccinium macrocarpon HOM05D005949 ORTHO05D006945 3.9e-84 316.2 315 54.6
SHI03792 Sapria himalayana HOM05D005949 ORTHO05D006945 1.6e-82 310.8 248 59.7
AL7G15200 Arabidopsis lyrata HOM05D005949 ORTHO05D006945 7.7e-80 302.0 217 72.4
CSS0002019 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.8e-76 290.8 280 53.2
Cpa.g.sc130.71 Carica papaya HOM05D005949 ORTHO05D006945 3.2e-70 270.0 273 61.2
Duzib147G0933 Durio zibethinus HOM05D005949 ORTHO05D006945 1.8e-65 254.2 325 42.2
CDE04G3569 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 3.3e-59 233.4 330 44.5
SMO201G0168 Selaginella moellendorffii HOM05D005949 ORTHO05D006945 2.6e-56 223.8 396 44.4
Pp3c1_21850 Physcomitrium patens HOM05D005949 ORTHO05D006945 2.0e-51 207.6 392 42.9
Mapoly0062s0069 Marchantia polymorpha HOM05D005949 ORTHO05D006945 1.6e-48 198.0 408 33.8
Pp3c14_7210 Physcomitrium patens HOM05D005949 ORTHO05D006945 2.0e-48 197.6 392 42.3
CSS0020931 Camellia sinensis var. sinensis HOM05D005949 ORTHO05D006945 1.2e-45 188.3 159 57.2
Sp7g33630 Schrenkiella parvula HOM05D005949 ORTHO05D006945 5.2e-44 183.0 111 82.9
CBR_g20407 Chara braunii HOM05D005949 ORTHO05D006945 1.8e-41 174.5 419 38.2
CBR_g20410 Chara braunii HOM05D005949 ORTHO05D006945 7.0e-41 172.6 399 38.6
Psat1g081720 Pisum sativum HOM05D005949 ORTHO05D006945 1.0e-39 168.7 282 37.6
AagrBONN_evm.TU.Sc2ySwM_117.2156 Anthoceros agrestis HOM05D005949 ORTHO05D006945 1.5e-38 164.9 406 36.9
Sc07g0004380 Simmondsia chinensis HOM05D005949 ORTHO05D006945 1.2e-35 155.2 146 56.2
Psat1g081680 Pisum sativum HOM05D005949 ORTHO05D006945 7.5e-35 152.5 100 70.0
MD09G1021100 Malus domestica HOM05D005949 ORTHO05D006945 2.4e-33 147.5 113 60.2
Actinidia36134 Actinidia chinensis HOM05D005949 ORTHO05D006945 4.1e-33 146.7 113 60.2
MBI10_g15883_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 2.0e-32 144.4 127 59.1
CAN.G479.6 Capsicum annuum HOM05D005949 ORTHO05D006945 4.3e-30 136.7 214 37.9
MBI10_g37260_MAGBIO Magnolia biondii HOM05D005949 ORTHO05D006945 5.6e-30 136.3 215 47.0
Hma1.2p1_0818F.1_g223360 Hydrangea macrophylla HOM05D005949 ORTHO05D006945 3.1e-28 130.6 100 60.0
CAN.G370.99 Capsicum annuum HOM05D000140 ORTHO05D000087 4.1e-25 120.2 109 54.1
SHI03793 Sapria himalayana HOM05D005949 ORTHO05D006945 2.0e-24 117.9 72 75.0
Zm00001eb120940 Zea mays HOM05D005949 ORTHO05D006945 5.0e-23 113.2 131 45.8
CAN.G1258.5 Capsicum annuum HOM05D005949 ORTHO05D006945 2.5e-22 110.9 80 62.5
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 2.4e-17 94.4 196 32.1
Cpa.g.sc130.69 Carica papaya HOM05D005949 ORTHO05D006945 7.3e-14 82.8 57 66.7
CAN.G15.16 Capsicum annuum HOM05D005949 ORTHO05D006945 3.6e-13 80.5 55 63.6
CDE04G3731 Ceratophyllum demersum HOM05D005949 ORTHO05D006945 1.2e-11 75.5 60 58.3
Sc07g0004370 Simmondsia chinensis HOM05D005949 ORTHO05D006945 5.8e-11 73.2 66 54.5
CAN.G153.13 Capsicum annuum HOM05D001265 ORTHO05D006945 5.4e-09 66.6 41 73.2
MBI07_g20478_MAGBIO Magnolia biondii HOM05D000141 ORTHO05D001968 5.1e-07 60.1 50 54.0
CAN.G2149.1 Capsicum annuum HOM05D001265 ORTHO05D006945 6.6e-07 59.7 53 52.8
CAN.G1258.4 Capsicum annuum HOM05D005949 ORTHO05D006945 1.1e-06 58.9 38 68.4
CAN.G898.5 Capsicum annuum HOM05D005949 ORTHO05D006945 5.6e-06 56.6 38 65.8
CAN.G1086.1 Capsicum annuum HOM05D005949 ORTHO05D006945 9.6e-06 55.8 40 62.5


User provided reference genes

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