Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G35700 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 3.0e-135 485.3 276 100.0
AL7G15420 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 1.2e-91 340.5 295 72.9
Carub.0007s0458 Capsella rubella HOM05D008569 ORTHO05D010111 3.1e-55 219.5 275 48.4
A01p02990 Brassica napus HOM05D008569 ORTHO05D010111 2.9e-53 213.0 286 48.3
BraA01t00282Z Brassica rapa HOM05D008569 ORTHO05D010111 2.9e-53 213.0 286 48.3
Thhalv10026068m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 9.3e-52 208.0 280 46.4
C01p03340 Brassica napus HOM05D008569 ORTHO05D010111 4.6e-51 205.7 283 46.6
BolC1t00319H Brassica oleracea HOM05D008569 ORTHO05D010111 4.6e-51 205.7 283 46.6
AL7G15540 Arabidopsis lyrata HOM05D008569 ORTHO05D010111 1.7e-40 170.6 292 42.8
AT4G35610 Arabidopsis thaliana HOM05D008569 ORTHO05D010111 5.7e-33 145.6 289 38.4
Thhalv10023161m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 1.7e-32 144.1 207 44.4
Sp7g33380 Schrenkiella parvula HOM05D008569 ORTHO05D010111 7.0e-31 138.7 275 37.5
BcaNung03648 Brassica carinata HOM05D008569 ORTHO05D010111 3.0e-26 123.2 287 42.5
Carub.0007s0469 Capsella rubella HOM05D008569 ORTHO05D010111 3.9e-26 122.9 334 31.1
A01p03020 Brassica napus HOM05D008569 ORTHO05D010111 1.1e-25 121.3 279 39.4
BraA01t00284Z Brassica rapa HOM05D008569 ORTHO05D010111 1.1e-25 121.3 279 39.4
BcaNung03645 Brassica carinata HOM05D008569 ORTHO05D010111 1.7e-24 117.5 285 37.9
Thhalv10026930m.g Eutrema salsugineum HOM05D008569 ORTHO05D010111 2.2e-24 117.1 303 35.0
CARHR243950 Cardamine hirsuta HOM05D008569 ORTHO05D010111 3.5e-22 109.8 196 39.3
C01p03370 Brassica napus HOM05D008569 ORTHO05D010111 4.5e-22 109.4 275 36.0
BolC1t00322H Brassica oleracea HOM05D008569 ORTHO05D010111 4.5e-22 109.4 275 36.0
THA.LOC104820185 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 8.0e-19 98.6 273 33.0
THA.LOC104820184 Tarenaya hassleriana HOM05D008569 ORTHO05D010111 2.7e-14 83.6 273 28.6
ClCG10G000200 Citrullus lanatus HOM05D008569 ORTHO05D010111 1.1e-12 78.2 151 36.4
Cfa007069 Carpinus fangiana HOM05D008569 ORTHO05D010111 2.1e-11 73.9 166 32.5
Sabra05G0082900 Salix brachista HOM05D008569 ORTHO05D010111 2.1e-11 73.9 149 32.2
Sed0003917 Sechium edule HOM05D008569 ORTHO05D010111 2.1e-11 73.9 123 36.6
Haze_03671 Corylus avellana HOM05D008569 ORTHO05D010111 2.7e-11 73.6 215 30.7
CsaV3_3G000220 Cucumis sativus L. HOM05D008569 ORTHO05D010111 2.7e-11 73.6 151 35.1
Ca_24971_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 4.7e-11 72.8 168 31.5
Potri.005G100300 Populus trichocarpa HOM05D008569 ORTHO05D010111 4.7e-11 72.8 251 26.7
MELO3C013717.2 Cucumis melo HOM05D008569 ORTHO05D010111 6.1e-11 72.4 239 31.4
arahy.Tifrunner.gnm1.ann1.JYQV5P Arachis hypogaea HOM05D010736 ORTHO05D010111 8.0e-11 72.0 69 44.9
arahy.Tifrunner.gnm1.ann1.KB9TDA Arachis hypogaea HOM05D010736 ORTHO05D010111 8.0e-11 72.0 69 44.9
Medtr5g023910 Medicago truncatula HOM05D010736 ORTHO05D010111 1.0e-10 71.6 182 29.7
Psat0s1262g0120 Pisum sativum HOM05D010736 ORTHO05D010111 2.3e-10 70.5 65 49.2
Psat2g149320 Pisum sativum HOM05D010736 ORTHO05D010111 5.2e-10 69.3 115 34.8
Sed0010976 Sechium edule HOM05D008569 ORTHO05D010111 8.8e-10 68.6 103 42.7
TPR.G8374 Trifolium pratense HOM05D010736 ORTHO05D010111 2.0e-09 67.4 248 27.0
arahy.Tifrunner.gnm1.ann1.62X1XK Arachis hypogaea HOM05D010736 ORTHO05D010111 2.6e-09 67.0 156 30.8
arahy.Tifrunner.gnm1.ann1.IS160S Arachis hypogaea HOM05D010736 ORTHO05D010111 2.6e-09 67.0 156 30.8
Lj2g0020887 Lotus japonicus HOM05D010736 ORTHO05D010111 3.4e-09 66.6 64 43.8
Oeu048888.1 Olea europaea HOM05D008569 ORTHO05D026372 3.4e-09 66.6 43 65.1
MELO3C007971.2 Cucumis melo HOM05D008569 ORTHO05D010111 4.4e-09 66.2 159 33.3
CsaV3_6G047820 Cucumis sativus L. HOM05D008569 ORTHO05D010111 5.7e-09 65.9 159 33.3
Rhsim05G0047500 Rhododendron simsii HOM05D000174 ORTHO05D001526 7.5e-09 65.5 76 43.4
RhsimUnG0141900 Rhododendron simsii HOM05D000174 ORTHO05D001526 7.5e-09 65.5 76 43.4
TPR.G8399 Trifolium pratense HOM05D013440 ORTHO05D013937 1.7e-08 64.3 125 33.6
Psat0s1262g0240 Pisum sativum HOM05D010736 ORTHO05D010111 2.8e-08 63.5 110 32.7
Atru.chr3.964 Acer truncatum HOM05D008569 ORTHO05D010111 3.7e-08 63.2 87 44.8
ClCG01G020850 Citrullus lanatus HOM05D008569 ORTHO05D010111 3.7e-08 63.2 148 35.8
Thecc.01G006600 Theobroma cacao HOM05D019103 ORTHO05D010111 4.8e-08 62.8 65 52.3
Gohir.A07G170878 Gossypium hirsutum HOM05D019103 ORTHO05D010111 6.3e-08 62.4 46 58.7
Gohir.D07G177633 Gossypium hirsutum HOM05D019103 ORTHO05D010111 6.3e-08 62.4 46 58.7
Gorai.001G198600 Gossypium raimondii HOM05D019103 ORTHO05D010111 6.3e-08 62.4 46 58.7
unitig_736.g22730 Utricularia gibba HOM05D008569 ORTHO05D001526 8.3e-08 62.0 102 32.4
Glyma.11G084900 Glycine max HOM05D010736 ORTHO05D010111 1.4e-07 61.2 71 42.3
CiPaw.07G003700 Carya illinoinensis HOM05D008569 ORTHO05D010111 1.8e-07 60.8 229 28.4
Ca_24970_v3 Cicer arietinum L. HOM05D010736 ORTHO05D010111 1.8e-07 60.8 127 29.9
Phvul.002G115500 Phaseolus vulgaris HOM05D010736 ORTHO05D010111 2.4e-07 60.5 54 42.6
VMungo1215G0851 Vigna mungo HOM05D010736 ORTHO05D010111 2.4e-07 60.5 69 40.6
CSS0027823 Camellia sinensis var. sinensis HOM05D000174 ORTHO05D001526 3.1e-07 60.1 68 44.1
Migut.H02203 Erythranthe guttata HOM05D008569 ORTHO05D010111 4.1e-07 59.7 49 55.1
Hma1.2p1_0032F.1_g018820 Hydrangea macrophylla HOM05D000174 ORTHO05D001526 5.4e-07 59.3 68 42.6
PGR042G3277 Punica granatum HOM05D000174 ORTHO05D001526 5.4e-07 59.3 69 36.2
SGA_v2.0_scaffold1068G53826 Striga asiatica HOM05D000174 ORTHO05D010111 7.0e-07 58.9 84 35.7
Duzib147G0625 Durio zibethinus HOM05D019103 ORTHO05D010111 9.1e-07 58.5 110 35.5
vmacro17301 Vaccinium macrocarpon HOM05D000174 ORTHO05D001526 9.1e-07 58.5 62 41.9
Duzib264G0559 Durio zibethinus HOM05D019103 ORTHO05D010111 1.2e-06 58.2 128 34.4
Cpa.g.c32926 Carica papaya HOM05D008569 ORTHO05D010111 1.6e-06 57.8 200 28.0
Oeu031633.1 Olea europaea HOM05D008569 ORTHO05D010111 1.6e-06 57.8 113 31.9
Prupe.7G181100 Prunus persica HOM05D008569 ORTHO05D010111 1.6e-06 57.8 59 45.8
Zm00001eb033660 Zea mays HOM05D000174 ORTHO05D001526 1.6e-06 57.8 39 56.4
HPP92_003504 Vanilla planifolia HOM05D000174 ORTHO05D001526 2.0e-06 57.4 54 42.6
GSVIVG01023887001 Vitis vinifera HOM05D000174 ORTHO05D001526 2.0e-06 57.4 125 34.4
Ah.01g023730 Amaranthus hybridus HOM05D000174 ORTHO05D001526 2.7e-06 57.0 65 40.0
ClCG02G009940 Citrullus lanatus HOM05D000174 ORTHO05D001526 2.7e-06 57.0 63 42.9
ECA240G0792 Erigeron canadensis HOM05D000174 ORTHO05D000630 2.7e-06 57.0 57 47.4
Manes.02G113100 Manihot esculenta HOM05D008569 ORTHO05D010111 2.7e-06 57.0 39 53.8
QL06p052831 Quercus lobata HOM05D008569 ORTHO05D010111 2.7e-06 57.0 132 33.3
QL06p053745 Quercus lobata HOM05D008569 ORTHO05D010111 2.7e-06 57.0 131 33.6
HPP92_020708 Vanilla planifolia HOM05D000174 ORTHO05D001526 2.7e-06 57.0 40 55.0
Manes.09G006400 Manihot esculenta HOM05D000174 ORTHO05D001526 3.5e-06 56.6 63 39.7
PGR102G2978 Punica granatum HOM05D008569 ORTHO05D010111 4.5e-06 56.2 108 33.3
SGA_v2.0_scaffold7G03548 Striga asiatica HOM05D008543 ORTHO05D000630 4.5e-06 56.2 61 42.6
HPP92_014994 Vanilla planifolia HOM05D000174 ORTHO05D001526 4.5e-06 56.2 67 41.8
CsaV3_6G010150 Cucumis sativus L. HOM05D000174 ORTHO05D000198 7.7e-06 55.5 37 56.8
PGSC0003DMG400022147 Solanum tuberosum HOM05D008543 ORTHO05D000630 7.7e-06 55.5 52 46.2


User provided reference genes

Program Settings