Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G31200 Arabidopsis thaliana HOM05D005511 ORTHO05D006616 0.0e+00 1271.5 651 100.0
AL7G20880 Arabidopsis lyrata HOM05D005511 ORTHO05D006616 0.0e+00 1198.7 665 92.2
Carub.0007s0934 Capsella rubella HOM05D005511 ORTHO05D006616 0.0e+00 1177.5 652 94.2
CARHR239100 Cardamine hirsuta HOM05D005511 ORTHO05D006616 0.0e+00 1140.6 660 90.6
Thhalv10024645m.g Eutrema salsugineum HOM05D005511 ORTHO05D006616 0.0e+00 1103.2 658 88.1
Sp7g29080 Schrenkiella parvula HOM05D005511 ORTHO05D006616 0.0e+00 1087.0 652 87.6
Aa31LG11G2310 Aethionema arabicum HOM05D005511 ORTHO05D006616 1.4e-303 1045.8 662 82.0
A01p07040 Brassica napus HOM05D005511 ORTHO05D006616 1.1e-281 973.0 658 79.9
BraA01t00656Z Brassica rapa HOM05D005511 ORTHO05D006616 6.8e-279 963.8 658 80.1
BcaC09g51902 Brassica carinata HOM05D005511 ORTHO05D006616 4.4e-278 961.1 658 79.8
C01p07790 Brassica napus HOM05D005511 ORTHO05D006616 1.7e-277 959.1 658 79.6
BolC1t00765H Brassica oleracea HOM05D005511 ORTHO05D006616 2.3e-274 948.7 658 79.2
THA.LOC104819918 Tarenaya hassleriana HOM05D005511 ORTHO05D006616 5.5e-244 847.8 672 69.6
Thecc.09G000500 Theobroma cacao HOM05D005511 ORTHO05D006616 4.1e-223 778.5 694 65.1
Ciclev10014516m.g Citrus clementina HOM05D005511 ORTHO05D006616 1.4e-218 763.5 677 65.4
Cpa.g.sc81.17 Carica papaya HOM05D005511 ORTHO05D006616 5.2e-218 761.5 694 63.1
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 2.6e-217 759.2 694 61.1
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 4.1e-215 751.9 696 60.5
Cfa013295 Carpinus fangiana HOM05D005511 ORTHO05D006616 4.5e-214 748.4 697 60.0
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.0e-213 747.3 706 61.6
Eucgr.H04509 Eucalyptus grandis HOM05D005511 ORTHO05D006616 1.7e-213 746.5 668 62.3
Medtr1g092770 Medicago truncatula HOM05D005511 ORTHO05D006616 5.5e-212 741.5 688 61.6
Psat5g176520 Pisum sativum HOM05D005511 ORTHO05D006616 9.4e-212 740.7 695 62.4
TPR.G32311 Trifolium pratense HOM05D005511 ORTHO05D006616 4.7e-211 738.4 704 61.1
TWI32G1116 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 8.0e-211 737.6 701 61.8
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.0e-210 737.3 687 61.0
Hma1.2p1_1470F.1_g285590 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 8.8e-210 734.2 685 62.0
TWI34G0645 Tripterygium wilfordii HOM05D005511 ORTHO05D006616 8.8e-210 734.2 702 59.8
Duzib168G0441 Durio zibethinus HOM05D005511 ORTHO05D006616 9.8e-209 730.7 692 62.4
Phvul.001G199500 Phaseolus vulgaris HOM05D005511 ORTHO05D006616 1.8e-207 726.5 707 59.5
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 5.4e-207 724.9 688 60.8
Ca_09096_v3 Cicer arietinum L. HOM05D005511 ORTHO05D006616 9.1e-207 724.2 693 60.5
Potri.018G002000 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.9e-204 716.5 641 62.4
Lalb_Chr25g0287701 Lupinus albus HOM05D005511 ORTHO05D006616 2.5e-204 716.1 707 57.1
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 2.5e-204 716.1 692 61.0
CiPaw.07G210700 Carya illinoinensis HOM05D005511 ORTHO05D006616 4.2e-204 715.3 679 58.6
VMungo1383G1052 Vigna mungo HOM05D005511 ORTHO05D006616 4.2e-204 715.3 722 57.1
Dinv38802 Davidia involucrata HOM05D005511 ORTHO05D006616 1.4e-202 710.3 710 58.3
Glyma.12G151100 Glycine max HOM05D005511 ORTHO05D006616 3.0e-202 709.1 712 58.6
GSVIVG01029743001 Vitis vinifera HOM05D005511 ORTHO05D006616 3.0e-202 709.1 695 62.6
CSS0031635 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 6.8e-202 708.0 710 58.6
TAR624G0177 Trochodendron aralioides HOM05D005511 ORTHO05D006616 1.2e-201 707.2 712 60.3
arahy.Tifrunner.gnm1.ann1.Q5NSRJ Arachis hypogaea HOM05D005511 ORTHO05D006616 5.7e-201 704.9 713 57.2
Sed0022409 Sechium edule HOM05D005511 ORTHO05D006616 1.6e-198 696.8 694 58.2
Glyma.17G079400 Glycine max HOM05D005511 ORTHO05D006616 7.8e-198 694.5 715 57.8
Nitab4.5_0013218g0030 Nicotiana tabacum HOM05D005511 ORTHO05D006616 7.8e-198 694.5 712 58.0
Peaxi162Scf00096g01112 Petunia axillaris HOM05D005511 ORTHO05D006616 1.0e-197 694.1 715 57.9
PGSC0003DMG400028246 Solanum tuberosum HOM05D005511 ORTHO05D006616 1.7e-197 693.3 708 58.5
Lj1g0000151 Lotus japonicus HOM05D005511 ORTHO05D006616 6.6e-197 691.4 712 57.7
Nitab4.5_0001801g0060 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.1e-196 690.6 712 57.4
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 1.5e-196 690.3 721 56.0
CAN.G423.39 Capsicum annuum HOM05D005511 ORTHO05D006616 2.5e-196 689.5 692 58.2
CAN.G841.12 Capsicum annuum HOM05D005511 ORTHO05D006616 3.3e-196 689.1 691 58.3
ClCG05G026390 Citrullus lanatus HOM05D005511 ORTHO05D006616 1.6e-195 686.8 715 56.2
PGR142G1479 Punica granatum HOM05D005511 ORTHO05D006616 6.1e-195 684.9 706 57.8
Sopen10g032680 Solanum pennellii HOM05D005511 ORTHO05D006616 1.8e-194 683.3 690 58.6
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 4.0e-194 682.2 705 57.6
Solyc10g083200.2 Solanum lycopersicum HOM05D005511 ORTHO05D006616 6.8e-194 681.4 690 58.7
arahy.Tifrunner.gnm1.ann1.V3D0DH Arachis hypogaea HOM05D005511 ORTHO05D006616 8.9e-194 681.0 743 54.6
Cc03_g10050 Coffea canephora HOM05D005511 ORTHO05D006616 8.9e-194 681.0 692 58.5
GSVIVG01014608001 Vitis vinifera HOM05D005511 ORTHO05D006616 4.4e-193 678.7 696 59.3
Actinidia31365 Actinidia chinensis HOM05D005511 ORTHO05D006616 2.9e-192 676.0 708 57.9
Manes.03G000300 Manihot esculenta HOM05D005511 ORTHO05D006616 3.7e-192 675.6 690 59.7
Peaxi162Scf01013g00235 Petunia axillaris HOM05D005511 ORTHO05D006616 4.9e-192 675.2 719 55.9
Rhsim04G0157200 Rhododendron simsii HOM05D005511 ORTHO05D006616 6.4e-192 674.9 668 60.3
Hund14329 Selenicereus undatus HOM05D005511 ORTHO05D006616 1.1e-191 674.1 679 60.7
Ah.07g201420 Amaranthus hybridus HOM05D005511 ORTHO05D006616 3.5e-190 669.1 684 60.4
vmacro03505 Vaccinium macrocarpon HOM05D005511 ORTHO05D006616 3.0e-189 666.0 694 58.8
DCAR_027476 Daucus carota HOM05D005511 ORTHO05D006616 1.5e-188 663.7 723 55.5
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 2.5e-188 662.9 704 56.1
PSO541G5250 Papaver somniferum HOM05D005511 ORTHO05D006616 5.6e-188 661.8 720 58.5
Nitab4.5_0000167g0180 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.1e-186 657.5 714 55.6
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 2.0e-185 653.3 628 58.4
MD08G1126000 Malus domestica HOM05D005511 ORTHO05D006616 2.4e-183 646.4 715 54.7
EL10Ac5g11907 Beta vulgaris HOM05D005511 ORTHO05D006616 1.6e-182 643.7 678 58.1
Lsat_1_v5_gn_4_32681 Lactuca sativa HOM05D005511 ORTHO05D006616 2.5e-180 636.3 708 56.1
CDE07G1638 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 3.3e-180 636.0 699 55.7
Oeu009791.1 Olea europaea HOM05D005511 ORTHO05D006616 4.7e-179 632.1 703 55.0
Oeu001428.2 Olea europaea HOM05D005511 ORTHO05D006616 1.5e-177 627.1 704 54.5
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 2.6e-177 626.3 699 54.5
Prupe.1G457600 Prunus persica HOM05D005511 ORTHO05D006616 7.5e-177 624.8 700 56.6
CDE06G2039 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 3.5e-174 615.9 671 54.7
AUR62007421 Chenopodium quinoa HOM05D005511 ORTHO05D006616 3.5e-174 615.9 691 56.6
Oeu018783.1 Olea europaea HOM05D005511 ORTHO05D006616 6.0e-174 615.1 693 56.0
HanXRQChr03g0093821 Helianthus annuus HOM05D005511 ORTHO05D006616 7.3e-172 608.2 663 56.1
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 2.8e-171 606.3 699 53.8
CSS0032846 Camellia sinensis var. sinensis HOM05D005511 ORTHO05D006616 8.9e-170 601.3 679 54.9
Sc03g0008920 Simmondsia chinensis HOM05D005511 ORTHO05D006616 2.6e-169 599.7 682 54.7
Os06g0682700 Oryza sativa ssp. japonica HOM05D005511 ORTHO05D006616 9.9e-169 597.8 548 60.2
Aqoxy4G02032 Aquilegia oxysepala HOM05D005511 ORTHO05D006616 1.3e-168 597.4 582 58.4
ECA234G2010 Erigeron canadensis HOM05D005511 ORTHO05D006616 1.3e-168 597.4 652 56.4
MBI02_g34313_MAGBIO Magnolia biondii HOM05D005511 ORTHO05D006616 2.9e-168 596.3 710 54.9
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.3e-165 587.4 556 59.0
ATR1145G079 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.1e-164 584.3 713 52.9
Migut.H02336 Erythranthe guttata HOM05D005511 ORTHO05D006616 1.2e-163 580.9 672 53.9
FvH4_2g36600 Fragaria vesca HOM05D005511 ORTHO05D006616 2.8e-163 579.7 587 57.6
Nitab4.5_0001579g0070 Nicotiana tabacum HOM05D005511 ORTHO05D006616 1.3e-160 570.9 745 50.3
FAN15G0681 Fragaria x ananassa HOM05D005511 ORTHO05D006616 4.9e-160 568.9 588 57.3
ATR0686G209 Amborella trichopoda HOM05D005511 ORTHO05D006616 6.4e-160 568.5 723 51.6
Lj3A264G15 Lonicera japonica HOM05D005511 ORTHO05D006616 1.9e-159 567.0 612 56.5
RcHm_v2.0_Chr6g0305221 Rosa chinensis HOM05D005511 ORTHO05D006616 2.8e-155 553.1 532 59.0
FAN27G2128 Fragaria x ananassa HOM05D005511 ORTHO05D007122 6.2e-147 525.4 527 57.9
FAN20G1701 Fragaria x ananassa HOM05D005511 ORTHO05D007122 4.0e-146 522.7 530 57.2
AUR62027311 Chenopodium quinoa HOM05D005511 ORTHO05D006616 4.8e-139 499.2 545 54.1
SGA_v2.0_scaffold188G40311 Striga asiatica HOM05D005511 ORTHO05D006616 1.4e-138 497.7 542 56.3
Sc03g0008950 Simmondsia chinensis HOM05D005511 ORTHO05D006616 2.3e-133 480.3 471 57.7
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 3.9e-133 479.6 686 45.6
Mapoly0058s0003 Marchantia polymorpha HOM05D005511 ORTHO05D006616 1.2e-129 468.0 675 48.6
unitig_32.g11169 Utricularia gibba HOM05D005511 ORTHO05D006616 2.0e-129 467.2 590 49.7
Nn1g03658 Nelumbo nucifera HOM05D005511 ORTHO05D006616 1.9e-124 450.7 428 60.5
Zm00001eb273620 Zea mays HOM05D005511 ORTHO05D006616 3.2e-111 406.8 370 58.6
Sabra06G0216900 Salix brachista HOM05D005511 ORTHO05D006616 2.0e-108 397.5 347 63.1
SMO147G0244 Selaginella moellendorffii HOM05D005511 ORTHO05D006616 2.0e-105 387.5 548 46.0
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 6.5e-104 382.5 356 62.6
Atru.chr7.2703 Acer truncatum HOM05D005511 ORTHO05D006616 8.0e-102 375.6 311 66.9
Haze_21772 Corylus avellana HOM05D005511 ORTHO05D006616 1.7e-99 367.9 319 62.4
Haze_21773 Corylus avellana HOM05D005511 ORTHO05D006616 2.5e-95 354.0 363 56.5
Hma1.2p1_0379F.1_g139860 Hydrangea macrophylla HOM05D005511 ORTHO05D006616 8.0e-94 349.0 315 63.2
CBR_g44445 Chara braunii HOM05D005511 ORTHO05D006616 4.9e-83 313.2 858 33.0
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 2.4e-82 310.8 833 32.7
SEGI_09992 Sequoiadendron giganteum HOM05D005511 ORTHO05D006616 3.7e-75 287.0 363 48.8
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 4.3e-71 273.5 340 55.6
SHI01951 Sapria himalayana HOM05D000002 ORTHO05D000001 3.2e-66 257.3 322 56.8
SHI01952 Sapria himalayana HOM05D005511 ORTHO05D006616 5.4e-66 256.5 357 47.6
ATR0686G036 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.3e-56 225.3 263 51.7
AagrBONN_evm.TU.Sc2ySwM_228.1219 Anthoceros agrestis HOM05D005511 ORTHO05D006616 1.4e-53 215.3 412 40.5
unitig_748.g7741 Utricularia gibba HOM05D005511 ORTHO05D006616 1.7e-51 208.4 272 48.5
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 2.9e-51 207.6 222 54.1
VMungo1383G0863 Vigna mungo HOM05D005511 ORTHO05D006616 3.2e-50 204.1 142 75.4
ATR1145G067 Amborella trichopoda HOM05D005511 ORTHO05D006616 1.0e-40 172.6 243 46.1
CDE06G0583 Ceratophyllum demersum HOM05D005511 ORTHO05D006616 1.7e-40 171.8 182 47.8
Nitab4.5_0000365g0090 Nicotiana tabacum HOM05D005511 ORTHO05D006616 3.6e-38 164.1 125 70.4
Psat6g134200 Pisum sativum HOM05D005511 ORTHO05D006616 7.4e-31 139.8 137 60.6
Actinidia34689 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.6e-30 138.7 181 51.4
Cre04.g222300 Chlamydomonas reinhardtii HOM05D005511 ORTHO05D006616 7.1e-26 123.2 404 27.7
CANSAT21G0937 Cannabis sativa HOM05D005511 ORTHO05D006616 2.1e-25 121.7 150 48.7
PGSC0003DMG400027627 Solanum tuberosum HOM05D005511 ORTHO05D006616 9.0e-13 79.7 82 53.7
Sc03g0008960 Simmondsia chinensis HOM05D005511 ORTHO05D006616 6.7e-08 63.5 147 43.5
Actinidia02692 Actinidia chinensis HOM05D005511 ORTHO05D006616 1.5e-07 62.4 105 38.1
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 1.5e-07 62.4 52 53.8
PRCOL_00003511 Prasinoderma coloniale HOM05D005511 ORTHO05D006616 6.3e-06 57.0 69 42.0
PRCOL_00003186 Prasinoderma coloniale HOM05D000032 ORTHO05D006970 8.2e-06 56.6 41 61.0


User provided reference genes

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