Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 1.3e-86 323.2 182 100.0
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 2.0e-66 256.1 201 77.1
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 9.8e-58 227.3 173 74.0
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 8.3e-57 224.2 173 72.3
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 1.2e-55 220.3 169 72.8
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 5.6e-53 211.5 172 73.8
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 2.8e-52 209.1 183 67.8
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 8.9e-51 204.1 175 73.7
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 2.0e-47 193.0 176 72.2
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 4.6e-47 191.8 183 63.9
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 1.2e-44 183.7 180 62.8
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 2.3e-43 179.5 167 59.9
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 5.4e-40 168.3 173 61.3
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 4.6e-39 165.2 206 52.9
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 4.6e-39 165.2 212 51.9
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 3.9e-38 162.2 212 51.4
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 1.1e-32 144.1 167 50.9
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 3.9e-30 135.6 200 47.0
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 5.1e-30 135.2 160 50.0
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 4.7e-28 128.6 161 47.8
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 4.7e-28 128.6 178 46.6
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 1.4e-27 127.1 160 50.0
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 1.4e-27 127.1 161 46.0
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 1.8e-27 126.7 172 46.5
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 2.4e-27 126.3 160 49.4
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 3.1e-27 125.9 165 47.3
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 3.1e-27 125.9 170 46.5
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 8.9e-27 124.4 162 43.8
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 1.2e-26 124.0 158 51.3
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 1.5e-26 123.6 159 45.9
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 2.0e-26 123.2 158 49.4
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 3.4e-26 122.5 158 46.8
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 4.4e-26 122.1 159 48.4
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 4.4e-26 122.1 160 45.6
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 7.6e-26 121.3 182 46.2
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 1.3e-25 120.6 155 46.5
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 1.7e-25 120.2 167 44.3
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 1.7e-25 120.2 169 43.2
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 1.7e-25 120.2 159 45.9
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 1.7e-25 120.2 159 45.9
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 2.2e-25 119.8 159 47.2
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 2.9e-25 119.4 162 53.7
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 2.9e-25 119.4 164 45.1
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 3.8e-25 119.0 161 42.9
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 4.9e-25 118.6 161 44.1
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 6.4e-25 118.2 166 42.8
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 1.9e-24 116.7 161 42.2
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 1.9e-24 116.7 161 52.2
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 3.2e-24 115.9 165 46.1
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 5.4e-24 115.2 180 41.1
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 5.4e-24 115.2 163 43.6
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 7.1e-24 114.8 173 41.0
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 1.2e-23 114.0 168 41.1
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 1.6e-23 113.6 168 41.1
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 2.1e-23 113.2 161 42.9
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 2.1e-23 113.2 164 40.2
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 3.5e-23 112.5 159 43.4
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 4.6e-23 112.1 163 41.7
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 1.3e-22 110.5 181 40.3
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 1.3e-22 110.5 162 40.7
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 1.3e-22 110.5 159 52.8
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.3e-22 110.5 165 43.6
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 1.7e-22 110.2 165 38.8
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 1.7e-22 110.2 158 42.4
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 2.3e-22 109.8 165 41.8
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 3.0e-22 109.4 158 45.6
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 3.0e-22 109.4 166 41.6
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 5.1e-22 108.6 160 48.8
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 6.6e-22 108.2 164 45.1
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 1.1e-21 107.5 155 40.0
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 1.1e-21 107.5 158 45.6
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 1.1e-21 107.5 165 38.8
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 3.3e-21 105.9 164 43.3
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 5.6e-21 105.1 170 42.4
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 4.8e-20 102.1 161 37.9
BraA03t14903Z Brassica rapa HOM05D006778 ORTHO05D008341 6.2e-20 101.7 162 46.3
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 6.2e-20 101.7 163 41.1
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 8.1e-20 101.3 163 39.9
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 1.1e-19 100.9 167 39.5
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 6.9e-19 98.2 162 38.9
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 4.5e-18 95.5 166 36.1
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 9.9e-18 94.4 181 45.9
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 1.3e-17 94.0 171 33.9
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 3.2e-16 89.4 158 36.1
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 7.1e-16 88.2 160 38.8
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 1.0e-14 84.3 194 30.9
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 4.3e-13 79.0 77 58.4
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 4.3e-13 79.0 77 58.4
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 5.6e-13 78.6 138 37.0
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 2.8e-12 76.3 134 46.3
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 3.6e-12 75.9 73 54.8
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 4.8e-12 75.5 114 43.9
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 1.4e-11 73.9 170 33.5
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 3.1e-11 72.8 160 31.2
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 9.0e-11 71.2 128 40.6
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 9.0e-11 71.2 178 32.0
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 1.5e-10 70.5 70 54.3
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 2.0e-10 70.1 156 36.5
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 9.9e-10 67.8 70 51.4
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 2.2e-09 66.6 65 56.9
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 2.9e-09 66.2 158 29.1
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 1.9e-08 63.5 52 61.5
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 4.2e-08 62.4 76 44.7
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 5.5e-08 62.0 131 33.6
SEGI_27672 Sequoiadendron giganteum HOM05D006778 ORTHO05D008341 5.5e-08 62.0 70 57.1
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 7.1e-08 61.6 129 40.3
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 9.3e-08 61.2 63 54.0
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 9.3e-08 61.2 162 32.1
BcaB07g32727 Brassica carinata HOM05D004750 ORTHO05D006207 1.2e-07 60.8 81 66.7
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 1.2e-07 60.8 133 36.8
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 1.6e-07 60.5 152 35.5
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 3.5e-07 59.3 53 60.4
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.0e-06 57.8 66 50.0
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.0e-06 57.8 66 50.0
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 1.0e-06 57.8 66 50.0
BcaB02g06889 Brassica carinata HOM05D006778 ORTHO05D008341 1.3e-06 57.4 79 67.1
BcaC05g25005 Brassica carinata HOM05D002222 ORTHO05D002354 1.3e-06 57.4 79 67.1
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.3e-06 57.4 66 50.0
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 3.0e-06 56.2 136 33.1


User provided reference genes

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