Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 2.6e-223 778.5 422 100.0
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 6.6e-190 667.5 422 88.6
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 2.3e-182 642.5 418 82.1
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 3.2e-176 622.1 419 79.5
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 7.1e-176 620.9 431 83.1
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 4.1e-168 595.1 422 80.6
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 1.6e-159 566.6 420 78.8
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 2.4e-155 552.7 421 76.2
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 6.9e-155 551.2 421 76.2
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 1.5e-154 550.1 447 70.7
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 9.9e-154 547.4 421 77.2
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.4e-123 447.2 422 66.8
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.8e-123 446.8 355 74.6
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 3.8e-113 412.5 429 59.9
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 8.5e-113 411.4 430 57.9
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.1e-112 411.0 433 57.3
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 1.0e-110 404.4 463 54.2
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 1.8e-110 403.7 452 55.3
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 4.8e-108 395.6 434 57.1
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 3.1e-107 392.9 456 53.5
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 1.2e-106 391.0 442 56.6
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.6e-106 389.8 430 54.9
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 2.6e-106 389.8 460 53.9
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 5.9e-106 388.7 419 56.6
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 1.7e-105 387.1 444 55.6
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 2.9e-105 386.3 451 55.4
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 5.0e-105 385.6 429 55.0
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.1e-104 384.4 433 58.2
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.1e-104 384.4 430 56.5
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 4.2e-104 382.5 450 54.4
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 7.2e-104 381.7 454 52.6
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 9.4e-104 381.3 463 53.1
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 1.2e-103 380.9 461 53.6
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.6e-103 380.6 435 55.9
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 4.7e-103 379.0 439 54.7
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 8.0e-103 378.3 465 52.9
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 1.0e-102 377.9 449 58.6
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.4e-102 377.5 437 59.0
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 2.3e-102 376.7 461 52.7
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 2.3e-102 376.7 450 53.8
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 3.0e-102 376.3 446 53.1
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 2.6e-101 373.2 437 58.4
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 3.3e-101 372.9 437 58.4
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 5.7e-101 372.1 449 52.6
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 2.2e-100 370.2 469 52.7
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 3.7e-100 369.4 458 53.3
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 6.3e-100 368.6 495 50.1
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 1.4e-99 367.5 447 54.8
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 1.4e-99 367.5 497 49.3
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 4.1e-99 365.9 472 50.4
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 5.3e-99 365.5 455 53.0
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 7.0e-99 365.2 523 47.4
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 9.1e-99 364.8 435 54.3
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.0e-98 363.6 446 54.7
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 2.0e-98 363.6 503 49.9
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 2.7e-98 363.2 484 49.0
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 4.5e-98 362.5 424 54.7
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 5.9e-98 362.1 500 48.4
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 1.7e-97 360.5 450 51.8
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 2.9e-97 359.8 476 50.0
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 3.8e-97 359.4 458 52.2
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 5.0e-97 359.0 452 52.9
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 6.5e-97 358.6 496 48.6
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 1.5e-96 357.5 440 53.0
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 3.2e-96 356.3 499 48.5
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 5.5e-96 355.5 433 52.7
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 5.5e-96 355.5 441 53.7
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 9.4e-96 354.8 438 53.0
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 9.4e-96 354.8 419 53.2
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 9.4e-96 354.8 453 53.2
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 1.6e-95 354.0 491 49.9
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.6e-95 354.0 418 53.8
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.7e-95 352.4 496 48.2
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.4e-94 350.9 466 53.2
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.3e-94 350.1 496 48.0
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 1.2e-93 347.8 520 45.4
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 3.4e-93 346.3 443 52.6
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 7.5e-93 345.1 453 53.2
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 1.3e-92 344.4 466 50.9
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 6.3e-92 342.0 422 51.7
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 2.4e-91 340.1 443 52.8
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 1.2e-90 337.8 519 45.7
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 2.7e-90 336.7 457 50.3
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 1.7e-89 334.0 446 50.7
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 4.2e-88 329.3 478 46.7
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 9.5e-88 328.2 495 45.9
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.6e-87 327.4 438 50.9
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.7e-87 325.9 445 49.7
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 2.6e-85 320.1 493 45.4
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 1.3e-84 317.8 462 49.1
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 1.4e-83 314.3 418 51.0
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 1.8e-83 313.9 462 47.6
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 3.1e-83 313.2 457 50.1
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.3e-81 307.8 427 48.0
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 8.6e-81 305.1 445 50.8
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 7.3e-80 302.0 397 50.6
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 1.2e-79 301.2 437 51.7
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 1.2e-79 301.2 491 49.9
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 2.1e-79 300.4 400 51.5
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 8.0e-79 298.5 470 46.2
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.8e-78 297.4 433 48.3
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 7.0e-75 285.4 172 83.1
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 6.0e-74 282.3 327 55.7
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 7.8e-74 282.0 199 72.9
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 1.7e-73 280.8 451 45.0
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 2.5e-72 276.9 499 41.5
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 4.7e-71 272.7 501 43.3
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 8.0e-71 271.9 452 44.7
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 4.0e-70 269.6 508 45.5
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 6.8e-70 268.9 183 74.9
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 4.4e-69 266.2 480 41.0
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 9.8e-69 265.0 462 43.1
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 4.9e-68 262.7 411 44.0
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.9e-67 260.8 187 71.7
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.7e-66 256.9 385 46.8
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 3.3e-64 250.0 477 42.3
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 2.6e-61 240.4 419 46.1
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 2.9e-60 236.9 296 52.4
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 2.1e-55 220.7 363 45.2
TWI39G0687 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 8.1e-55 218.8 128 81.2
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 2.6e-53 213.8 460 41.1
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 2.0e-45 187.6 319 44.8
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 2.6e-45 187.2 390 41.3
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 8.4e-44 182.2 172 59.9
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 3.6e-39 166.8 492 33.9
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 1.4e-38 164.9 297 45.8
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 4.5e-37 159.8 153 52.9
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 1.4e-35 154.8 167 49.1
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 2.1e-31 141.0 416 34.1
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 2.5e-27 127.5 391 33.0
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 2.5e-27 127.5 391 33.0
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 1.6e-23 114.8 385 33.0
Ah.06g182230 Amaranthus hybridus HOM05D005375 ORTHO05D006598 4.8e-23 113.2 65 84.6
MCO03G124 Micromonas commoda HOM05D005375 ORTHO05D006598 1.2e-21 108.6 307 31.9
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 8.4e-20 102.4 167 46.7
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.1e-18 97.8 316 31.6
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 2.7e-18 97.4 97 55.7
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 4.6e-18 96.7 77 62.3
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 7.9e-18 95.9 171 44.4
MCO09G798 Micromonas commoda HOM05D005375 ORTHO05D006598 1.5e-16 91.7 157 38.9
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 6.5e-12 76.3 120 41.7
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 6.5e-12 76.3 120 41.7
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.6e-10 71.6 49 69.4
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 2.1e-10 71.2 68 58.8
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 2.1e-10 71.2 49 73.5
Lsat_1_v5_gn_8_116700 Lactuca sativa HOM05D000230 ORTHO05D000176 8.2e-07 59.3 115 31.3
Lj4C844G3 Lonicera japonica HOM05D000230 ORTHO05D000176 3.1e-06 57.4 117 31.6
Oeu004247.1 Olea europaea HOM05D000230 ORTHO05D000176 6.9e-06 56.2 117 29.9
Sp5g03890 Schrenkiella parvula HOM05D000230 ORTHO05D000176 6.9e-06 56.2 149 23.5
Aa31LG10G13570 Aethionema arabicum HOM05D000230 ORTHO05D000176 9.1e-06 55.8 149 23.5
AT3G59100 Arabidopsis thaliana HOM05D000230 ORTHO05D000176 9.1e-06 55.8 149 23.5
BcaC08g44958 Brassica carinata HOM05D000230 ORTHO05D000176 9.1e-06 55.8 149 23.5
C06p25880 Brassica napus HOM05D000230 ORTHO05D000176 9.1e-06 55.8 149 23.5
BolC6t37750H Brassica oleracea HOM05D000230 ORTHO05D000176 9.1e-06 55.8 149 23.5
Carub.0005s2586 Capsella rubella HOM05D000230 ORTHO05D000176 9.1e-06 55.8 149 23.5
Oeu050136.1 Olea europaea HOM05D000230 ORTHO05D000176 9.1e-06 55.8 117 29.9


User provided reference genes

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