Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G24175 Arabidopsis thaliana HOM05D006975 ORTHO05D008736 1.9e-154 549.3 307 100.0
AL7G29110 Arabidopsis lyrata HOM05D006975 ORTHO05D008736 4.4e-143 511.5 307 87.9
CARHR231580 Cardamine hirsuta HOM05D006975 ORTHO05D008736 2.4e-125 452.6 307 82.1
Carub.0007s1692 Capsella rubella HOM05D006975 ORTHO05D008736 1.7e-123 446.4 309 82.8
BolC1t01871H Brassica oleracea HOM05D006975 ORTHO05D008736 6.2e-121 438.0 310 76.5
C01p19420 Brassica napus HOM05D006975 ORTHO05D008736 1.8e-120 436.4 310 76.1
Sp7g22140 Schrenkiella parvula HOM05D006975 ORTHO05D008736 7.1e-117 424.5 309 73.8
BcaC09g50900 Brassica carinata HOM05D006975 ORTHO05D008736 1.6e-113 413.3 310 73.5
Thhalv10025797m.g Eutrema salsugineum HOM05D006975 ORTHO05D008736 4.4e-111 405.2 311 70.7
BraA01t01489Z Brassica rapa HOM05D006975 ORTHO05D008736 1.6e-108 396.7 309 71.8
A01p15500 Brassica napus HOM05D006975 ORTHO05D008736 4.0e-104 382.1 336 66.1
BcaNung01123 Brassica carinata HOM05D006975 ORTHO05D008736 1.7e-99 366.7 312 66.0
Aa31sc424G20 Aethionema arabicum HOM05D006975 ORTHO05D008736 1.5e-87 327.0 318 61.3
THA.LOC104798667 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 1.6e-73 280.4 226 67.3
Duzib093G1023 Durio zibethinus HOM05D006975 ORTHO05D008736 1.0e-62 244.6 311 53.7
Potri.005G240800 Populus trichocarpa HOM05D006975 ORTHO05D008736 1.1e-61 241.1 308 47.7
Gohir.A01G110800 Gossypium hirsutum HOM05D006975 ORTHO05D008736 1.4e-61 240.7 309 52.4
Gohir.D01G097400 Gossypium hirsutum HOM05D006975 ORTHO05D008736 9.4e-61 238.0 308 51.3
Gorai.002G123100 Gossypium raimondii HOM05D006975 ORTHO05D008736 2.1e-60 236.9 305 51.5
CiPaw.08G066800 Carya illinoinensis HOM05D006975 ORTHO05D008736 1.4e-59 234.2 303 49.2
Cpa.g.sc26.57 Carica papaya HOM05D006975 ORTHO05D008736 1.1e-58 231.1 310 49.4
COL.COLO4_26134 Corchorus olitorius HOM05D006975 ORTHO05D008736 2.6e-58 229.9 315 45.4
Sabra05G0186300 Salix brachista HOM05D006975 ORTHO05D008736 2.2e-57 226.9 307 45.6
CANSAT25G0709 Cannabis sativa HOM05D006975 ORTHO05D008736 8.2e-57 224.9 306 47.1
TWI12G0084 Tripterygium wilfordii HOM05D006975 ORTHO05D008736 9.1e-56 221.5 309 47.6
Haze_04763 Corylus avellana HOM05D006975 ORTHO05D008736 1.5e-55 220.7 308 48.4
Manes.05G146300 Manihot esculenta HOM05D006975 ORTHO05D008736 3.4e-55 219.5 311 45.7
PGR031G2234 Punica granatum HOM05D006975 ORTHO05D008736 1.7e-54 217.2 315 49.8
Cfa006087 Carpinus fangiana HOM05D006975 ORTHO05D008736 1.1e-53 214.5 310 50.3
CSS0026180 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 7.2e-53 211.8 224 52.2
ClCG05G018220 Citrullus lanatus HOM05D006975 ORTHO05D008736 1.2e-52 211.1 240 50.0
CsaV3_3G045930 Cucumis sativus L. HOM05D006975 ORTHO05D008736 2.1e-52 210.3 237 51.9
Dinv39526 Davidia involucrata HOM05D006975 ORTHO05D008736 2.1e-52 210.3 308 44.2
Sopen04g035150 Solanum pennellii HOM05D006975 ORTHO05D008736 2.1e-52 210.3 231 50.2
EL10Ac1g02185 Beta vulgaris HOM05D006975 ORTHO05D008736 3.6e-52 209.5 264 45.1
CSS0040454 Camellia sinensis var. sinensis HOM05D006975 ORTHO05D008736 4.7e-52 209.1 310 42.6
Sed0023128 Sechium edule HOM05D006975 ORTHO05D008736 4.7e-52 209.1 283 51.2
Psat6g231560 Pisum sativum HOM05D006975 ORTHO05D008736 6.1e-52 208.8 296 45.3
Solyc04g081540.3 Solanum lycopersicum HOM05D006975 ORTHO05D008736 7.9e-52 208.4 231 49.8
GSVIVG01009926001 Vitis vinifera HOM05D006975 ORTHO05D008736 1.4e-51 207.6 312 49.0
Nitab4.5_0008000g0010 Nicotiana tabacum HOM05D006975 ORTHO05D008736 2.3e-51 206.8 317 47.0
VMungo0720G0770 Vigna mungo HOM05D006975 ORTHO05D008736 3.0e-51 206.5 217 56.2
Ca_11200_v3 Cicer arietinum L. HOM05D006975 ORTHO05D008736 3.9e-51 206.1 222 52.7
Phvul.007G020200 Phaseolus vulgaris HOM05D006975 ORTHO05D008736 3.9e-51 206.1 311 41.5
TAR536G0001 Trochodendron aralioides HOM05D006975 ORTHO05D008736 3.9e-51 206.1 304 44.1
HanXRQChr05g0145201 Helianthus annuus HOM05D006975 ORTHO05D008736 8.8e-51 204.9 320 42.8
PGSC0003DMG401009870 Solanum tuberosum HOM05D006975 ORTHO05D008736 1.1e-50 204.5 313 40.6
TPR.G2436 Trifolium pratense HOM05D006975 ORTHO05D008736 2.0e-50 203.8 268 45.5
SGA_v2.0_scaffold11G05927 Striga asiatica HOM05D006975 ORTHO05D008736 2.6e-50 203.4 316 45.6
Cc10_g01570 Coffea canephora HOM05D006975 ORTHO05D008736 3.3e-50 203.0 314 43.9
Lalb_Chr02g0143331 Lupinus albus HOM05D006975 ORTHO05D008736 3.3e-50 203.0 319 44.2
Lj5g0003318 Lotus japonicus HOM05D006975 ORTHO05D008736 5.7e-50 202.2 219 50.2
Medtr1g112320 Medicago truncatula HOM05D006975 ORTHO05D008736 7.4e-50 201.8 268 44.8
Eucgr.H00993 Eucalyptus grandis HOM05D006975 ORTHO05D008736 9.7e-50 201.4 202 63.4
Lj4A797T59 Lonicera japonica HOM05D006975 ORTHO05D008736 9.7e-50 201.4 228 50.0
Oeu027521.1 Olea europaea HOM05D006975 ORTHO05D008736 1.3e-49 201.1 307 47.6
Ciclev10001912m.g Citrus clementina HOM05D006975 ORTHO05D008736 1.7e-49 200.7 307 49.2
QL02p011816 Quercus lobata HOM05D006975 ORTHO05D008736 1.7e-49 200.7 358 39.4
Thecc.08G046000 Theobroma cacao HOM05D006975 ORTHO05D008736 1.7e-49 200.7 257 47.5
AUR62035015 Chenopodium quinoa HOM05D006975 ORTHO05D008736 3.7e-49 199.5 217 56.2
ECA232G2413 Erigeron canadensis HOM05D006975 ORTHO05D008736 1.1e-48 198.0 302 41.7
Nn1g05932 Nelumbo nucifera HOM05D006975 ORTHO05D008736 2.4e-48 196.8 228 52.2
Hund05184 Selenicereus undatus HOM05D006975 ORTHO05D008736 3.1e-48 196.4 281 44.8
Atru.chr13.277_Atru.chr13.278 Acer truncatum HOM05D006975 ORTHO05D008736 4.1e-48 196.1 310 44.2
MELO3C003746.2 Cucumis melo HOM05D006975 ORTHO05D008736 4.1e-48 196.1 329 41.9
Prupe.1G364300 Prunus persica HOM05D006975 ORTHO05D008736 7.0e-48 195.3 213 55.9
Hma1.2p1_0023F.1_g015550 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 1.6e-47 194.1 226 52.7
MD08G1012000 Malus domestica HOM05D006975 ORTHO05D008736 1.6e-47 194.1 239 49.8
MBI05_g19267_MAGBIO Magnolia biondii HOM05D006975 ORTHO05D008736 2.0e-47 193.7 262 45.8
Actinidia15428 Actinidia chinensis HOM05D006975 ORTHO05D008736 4.5e-47 192.6 191 53.9
Aqoxy6G02228 Aquilegia oxysepala HOM05D006975 ORTHO05D008736 1.0e-46 191.4 282 45.4
Glyma.20G108900 Glycine max HOM05D006975 ORTHO05D008736 1.3e-46 191.0 258 52.7
PSO541G1271 Papaver somniferum HOM05D006975 ORTHO05D008736 1.3e-46 191.0 240 50.0
Zm00001eb086730 Zea mays HOM05D006975 ORTHO05D008736 1.3e-46 191.0 244 50.0
Os04g0250700 Oryza sativa ssp. japonica HOM05D006975 ORTHO05D008736 2.2e-46 190.3 266 44.4
PSO675G8288 Papaver somniferum HOM05D006975 ORTHO05D008736 2.9e-46 189.9 227 51.1
Sed0014296 Sechium edule HOM05D006975 ORTHO05D008736 3.8e-46 189.5 316 41.5
CAN.G311.39 Capsicum annuum HOM05D006975 ORTHO05D008736 5.0e-46 189.1 362 37.0
FvH4_2g38330 Fragaria vesca HOM05D006975 ORTHO05D008736 8.5e-46 188.3 267 47.6
Migut.C00848 Erythranthe guttata HOM05D006975 ORTHO05D008736 3.2e-45 186.4 304 42.4
MSTRG.1185 Avicennia marina HOM05D006975 ORTHO05D008736 1.6e-44 184.1 208 51.0
arahy.Tifrunner.gnm1.ann1.Z9XT7U Arachis hypogaea HOM05D006975 ORTHO05D008736 2.7e-44 183.3 218 48.2
RcHm_v2.0_Chr6g0303031 Rosa chinensis HOM05D006975 ORTHO05D008736 4.7e-44 182.6 304 46.4
HPP92_004984 Vanilla planifolia HOM05D006975 ORTHO05D008736 3.0e-43 179.9 269 43.5
FAN20G0256 Fragaria x ananassa HOM05D006975 ORTHO05D008736 5.2e-43 179.1 307 43.6
Lsat_1_v5_gn_0_34641 Lactuca sativa HOM05D006975 ORTHO05D008736 5.7e-42 175.6 287 46.0
AUR62041899 Chenopodium quinoa HOM05D006975 ORTHO05D008736 2.2e-41 173.7 184 57.6
CDE04G0963 Ceratophyllum demersum HOM05D006975 ORTHO05D008736 2.8e-41 173.3 308 40.3
DCAR_021031 Daucus carota HOM05D006975 ORTHO05D008736 3.7e-41 172.9 223 44.4
Atru.chr13.275 Acer truncatum HOM05D006975 ORTHO05D008736 4.8e-41 172.6 208 49.5
FAN15G2275 Fragaria x ananassa HOM05D006975 ORTHO05D008736 4.1e-40 169.5 307 42.7
Rhsim06G0020700 Rhododendron simsii HOM05D006975 ORTHO05D008736 5.3e-40 169.1 390 34.1
Peaxi162Scf00553g00101 Petunia axillaris HOM05D006975 ORTHO05D008736 9.1e-40 168.3 197 53.3
unitig_748.g7725 Utricularia gibba HOM05D006975 ORTHO05D008736 1.7e-38 164.1 207 45.9
THA.LOC104798678 Tarenaya hassleriana HOM05D006975 ORTHO05D008736 2.5e-37 160.2 328 39.3
FAN27G0483 Fragaria x ananassa HOM05D006975 ORTHO05D008736 1.2e-34 151.4 210 51.4
MD08G1011800 Malus domestica HOM05D006975 ORTHO05D008736 5.7e-34 149.1 204 45.6
arahy.Tifrunner.gnm1.ann1.Y91ZV9 Arachis hypogaea HOM05D006975 ORTHO05D008736 2.1e-28 130.6 300 34.0
Pp3c5_3830 Physcomitrium patens HOM05D006975 ORTHO05D008736 3.0e-27 126.7 243 36.6
Hma1.2p1_0023F.1_g015540 Hydrangea macrophylla HOM05D006975 ORTHO05D008736 3.4e-26 123.2 227 36.1
vmacro07578 Vaccinium macrocarpon HOM05D006975 ORTHO05D008736 1.3e-25 121.3 206 38.8
ATR0564G524 Amborella trichopoda HOM05D006975 ORTHO05D008736 5.9e-23 112.5 216 36.6
Mapoly0138s0045 Marchantia polymorpha HOM05D006975 ORTHO05D008736 1.7e-22 110.9 223 39.0
Eucgr.H00979 Eucalyptus grandis HOM05D006975 ORTHO05D008736 8.0e-20 102.1 125 58.4
TAR381G1583 Trochodendron aralioides HOM05D006975 ORTHO05D008736 5.7e-18 95.9 151 50.3
SEGI_37599 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 3.0e-14 83.6 62 61.3
CBR_g44391 Chara braunii HOM05D006975 ORTHO05D008736 4.3e-13 79.7 99 41.4
Eucgr.F00573 Eucalyptus grandis HOM05D006975 ORTHO05D008736 5.6e-13 79.3 187 40.6
Eucgr.F00575 Eucalyptus grandis HOM05D006975 ORTHO05D008736 7.3e-13 79.0 51 76.5
Pp3c8_21620 Physcomitrium patens HOM05D003148 ORTHO05D003894 7.3e-13 79.0 117 37.6
CDE02G4250 Ceratophyllum demersum HOM05D000565 ORTHO05D004389 1.2e-12 78.2 121 38.8
Pp3c24_16390 Physcomitrium patens HOM05D003148 ORTHO05D003894 1.2e-10 71.6 101 36.6
TAR628G0560 Trochodendron aralioides HOM05D006975 ORTHO05D008736 4.4e-10 69.7 147 35.4
Eucgr.H00986 Eucalyptus grandis HOM05D006975 ORTHO05D008736 2.9e-09 67.0 42 76.2
SEGI_16371 Sequoiadendron giganteum HOM05D006975 ORTHO05D008736 1.9e-08 64.3 102 35.3
arahy.Tifrunner.gnm1.ann1.1D0YR0 Arachis hypogaea HOM05D006975 ORTHO05D008736 2.4e-08 63.9 53 52.8
Eucgr.H00983 Eucalyptus grandis HOM05D006975 ORTHO05D008736 9.2e-08 62.0 51 54.9
Cfa006091 Carpinus fangiana HOM05D006789 ORTHO05D008460 5.0e-06 56.2 46 58.7


User provided reference genes

Program Settings