Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G21140 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 3.1e-131 471.9 244 100.0
AL7G32980 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 3.2e-112 408.7 252 85.7
Carub.0007s2029 Capsella rubella HOM05D005854 ORTHO05D007175 4.8e-100 368.2 251 78.9
Thhalv10026066m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 1.0e-94 350.5 253 75.5
CARHR227720 Cardamine hirsuta HOM05D005854 ORTHO05D007175 4.3e-93 345.1 247 75.3
C01p15070 Brassica napus HOM05D005854 ORTHO05D007175 1.1e-91 340.5 246 74.8
BcaC09g51255 Brassica carinata HOM05D005854 ORTHO05D007175 4.0e-91 338.6 246 74.4
BolC1t01456H Brassica oleracea HOM05D005854 ORTHO05D007175 4.0e-91 338.6 246 74.4
AT4G05400 Arabidopsis thaliana HOM05D005854 ORTHO05D007175 4.5e-90 335.1 252 70.2
A01p12480 Brassica napus HOM05D005854 ORTHO05D007175 7.6e-90 334.3 247 73.7
BraA01t01194Z Brassica rapa HOM05D005854 ORTHO05D007175 1.7e-89 333.2 249 73.5
Carub.0006s3331 Capsella rubella HOM05D005854 ORTHO05D007175 6.5e-89 331.3 252 69.0
BcaNung03840 Brassica carinata HOM05D005854 ORTHO05D007175 4.2e-88 328.6 250 70.8
CARHR252180 Cardamine hirsuta HOM05D005854 ORTHO05D007175 7.1e-88 327.8 255 67.8
Sp6g03690 Schrenkiella parvula HOM05D005854 ORTHO05D007175 2.1e-87 326.2 255 68.6
Aa31LG9G9180 Aethionema arabicum HOM05D005854 ORTHO05D007175 3.5e-87 325.5 244 68.9
AL6G48990 Arabidopsis lyrata HOM05D005854 ORTHO05D007175 8.7e-86 320.9 254 67.3
A09p25360 Brassica napus HOM05D005854 ORTHO05D007175 9.7e-85 317.4 255 67.5
Thhalv10028903m.g Eutrema salsugineum HOM05D005854 ORTHO05D007175 9.7e-85 317.4 255 67.1
C09p32360 Brassica napus HOM05D005854 ORTHO05D007175 1.4e-83 313.5 252 67.5
BolC9t56081H Brassica oleracea HOM05D005854 ORTHO05D007175 1.4e-83 313.5 252 67.5
BraA09t38118Z Brassica rapa HOM05D005854 ORTHO05D007175 6.9e-83 311.2 255 67.1
BcaB01g01902 Brassica carinata HOM05D005854 ORTHO05D007175 7.4e-77 291.2 256 63.7
Cpa.g.sc10.16 Carica papaya HOM05D005854 ORTHO05D007175 1.2e-74 283.9 248 61.3
Thecc.01G121600 Theobroma cacao HOM05D005854 ORTHO05D007175 5.0e-73 278.5 251 61.8
Duzib147G0085 Durio zibethinus HOM05D005854 ORTHO05D007175 5.5e-72 275.0 251 59.8
Ciclev10016474m.g Citrus clementina HOM05D005854 ORTHO05D007175 2.7e-71 272.7 244 59.0
Atru.chr10.871 Acer truncatum HOM05D005854 ORTHO05D007175 6.1e-71 271.6 245 60.0
TWI53G0615 Tripterygium wilfordii HOM05D005854 ORTHO05D007175 7.9e-71 271.2 246 58.9
Gohir.A02G138400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.8e-70 270.0 251 59.0
Gorai.003G050300 Gossypium raimondii HOM05D005854 ORTHO05D007175 3.0e-70 269.2 251 59.0
Gohir.D03G049000 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.5e-69 266.9 251 58.2
COL.COLO4_22426 Corchorus olitorius HOM05D005854 ORTHO05D007175 2.0e-69 266.5 247 60.3
CANSAT54G0206 Cannabis sativa HOM05D005854 ORTHO05D007175 5.7e-69 265.0 249 59.8
Gohir.A03G042400 Gossypium hirsutum HOM05D005854 ORTHO05D007175 2.8e-68 262.7 252 56.7
Duzib187G0164 Durio zibethinus HOM05D005854 ORTHO05D007175 8.2e-68 261.2 252 57.9
CsaV3_3G008340 Cucumis sativus L. HOM05D005854 ORTHO05D007175 1.4e-67 260.4 250 57.6
PGR031G0642 Punica granatum HOM05D005854 ORTHO05D007175 3.1e-67 259.2 249 55.8
Nn2g15034 Nelumbo nucifera HOM05D005854 ORTHO05D007175 4.5e-66 255.4 234 59.8
Manes.06G055200 Manihot esculenta HOM05D005854 ORTHO05D007175 7.7e-66 254.6 247 55.9
Potri.011G098000 Populus trichocarpa HOM05D005854 ORTHO05D007175 3.8e-65 252.3 247 56.3
Phvul.010G108400 Phaseolus vulgaris HOM05D005854 ORTHO05D007175 5.0e-65 251.9 250 55.6
Oeu063662.1 Olea europaea HOM05D005854 ORTHO05D007175 2.5e-64 249.6 235 57.4
vmacro13205 Vaccinium macrocarpon HOM05D005854 ORTHO05D007175 3.2e-64 249.2 253 56.5
Glyma.07G060800 Glycine max HOM05D005854 ORTHO05D007175 4.2e-64 248.8 243 56.0
RcHm_v2.0_Chr3g0451741 Rosa chinensis HOM05D005854 ORTHO05D007175 1.2e-63 247.3 248 56.9
MD04G1222200 Malus domestica HOM05D005854 ORTHO05D007175 2.1e-63 246.5 248 55.6
Sed0001947 Sechium edule HOM05D005854 ORTHO05D007175 2.1e-63 246.5 250 54.8
Sc26g0000750 Simmondsia chinensis HOM05D005854 ORTHO05D007175 4.7e-63 245.4 237 57.8
arahy.Tifrunner.gnm1.ann1.788ENG Arachis hypogaea HOM05D005854 ORTHO05D007175 6.1e-63 245.0 245 53.9
Haze_15607 Corylus avellana HOM05D005854 ORTHO05D007175 6.1e-63 245.0 250 53.2
Haze_23551 Corylus avellana HOM05D005854 ORTHO05D007175 6.1e-63 245.0 250 53.6
arahy.Tifrunner.gnm1.ann1.GVN9XJ Arachis hypogaea HOM05D005854 ORTHO05D007175 8.0e-63 244.6 245 53.9
TAR383G0748 Trochodendron aralioides HOM05D005854 ORTHO05D007175 1.8e-62 243.4 239 56.9
FvH4_6g03270 Fragaria vesca HOM05D005854 ORTHO05D007175 2.3e-62 243.0 249 55.4
Psat4g213880 Pisum sativum HOM05D005854 ORTHO05D007175 2.3e-62 243.0 253 55.3
Lalb_Chr10g0100131 Lupinus albus HOM05D005854 ORTHO05D007175 3.9e-62 242.3 247 55.1
CiPaw.02G037800 Carya illinoinensis HOM05D005854 ORTHO05D007175 6.7e-62 241.5 234 56.4
Lj9P593T21 Lonicera japonica HOM05D005854 ORTHO05D007175 6.7e-62 241.5 240 57.1
Hund23260 Selenicereus undatus HOM05D005854 ORTHO05D007175 1.1e-61 240.7 234 56.4
CSS0045126 Camellia sinensis var. sinensis HOM05D005854 ORTHO05D007175 1.5e-61 240.4 237 56.5
Cfa006467 Carpinus fangiana HOM05D005854 ORTHO05D007175 3.3e-61 239.2 250 52.4
Ca_25392_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 3.3e-61 239.2 252 55.2
Gorai.003G131400 Gossypium raimondii HOM05D005854 ORTHO05D007175 3.3e-61 239.2 244 54.9
MSTRG.17312 Avicennia marina HOM05D005854 ORTHO05D007175 4.4e-61 238.8 246 54.1
Actinidia10096 Actinidia chinensis HOM05D005854 ORTHO05D007175 7.4e-61 238.0 254 54.7
QL04p059766 Quercus lobata HOM05D005854 ORTHO05D007175 7.4e-61 238.0 250 54.0
TPR.G21281 Trifolium pratense HOM05D005854 ORTHO05D007175 7.4e-61 238.0 252 53.6
Ah.05g179960 Amaranthus hybridus HOM05D005854 ORTHO05D007175 2.2e-60 236.5 234 57.3
VMungo0331G0610 Vigna mungo HOM05D005854 ORTHO05D007175 2.2e-60 236.5 244 52.5
Sabra11G0084900 Salix brachista HOM05D005854 ORTHO05D007175 3.7e-60 235.7 246 53.3
Sabra11G0091100 Salix brachista HOM05D005854 ORTHO05D007175 3.7e-60 235.7 246 53.3
FAN05G3773 Fragaria x ananassa HOM05D005854 ORTHO05D007175 4.8e-60 235.3 241 53.9
Lj3g0026359 Lotus japonicus HOM05D005854 ORTHO05D007175 3.1e-59 232.6 250 52.4
DCAR_020830 Daucus carota HOM05D005854 ORTHO05D007175 4.1e-59 232.3 237 54.4
Medtr8g023960 Medicago truncatula HOM05D005854 ORTHO05D007175 4.1e-59 232.3 246 54.5
EL10Ac1g00324 Beta vulgaris HOM05D005854 ORTHO05D007175 5.3e-59 231.9 233 54.1
CAN.G78.154 Capsicum annuum HOM05D005854 ORTHO05D007175 7.0e-59 231.5 247 53.0
MELO3C006052.2 Cucumis melo HOM05D005854 ORTHO05D007175 7.0e-59 231.5 250 52.4
HanXRQChr04g0120611 Helianthus annuus HOM05D005854 ORTHO05D007175 2.0e-58 229.9 238 55.9
Cc02_g38850 Coffea canephora HOM05D005854 ORTHO05D007175 2.6e-58 229.6 238 53.8
Glyma.16G029400 Glycine max HOM05D005854 ORTHO05D007175 3.5e-58 229.2 245 52.2
HPP92_025111 Vanilla planifolia HOM05D005854 ORTHO05D007175 3.5e-58 229.2 231 55.8
AUR62004438 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.3e-57 227.3 237 55.7
PSO339G2746 Papaver somniferum HOM05D005854 ORTHO05D007175 2.2e-57 226.5 239 53.6
Ca_23562_v3 Cicer arietinum L. HOM05D005854 ORTHO05D007175 2.9e-57 226.1 252 53.2
PSO801G0186 Papaver somniferum HOM05D005854 ORTHO05D007175 2.9e-57 226.1 246 52.4
ATR0594G138 Amborella trichopoda HOM05D005854 ORTHO05D007175 5.0e-57 225.3 239 54.4
Hma1.2p1_0397F.1_g143770 Hydrangea macrophylla HOM05D005854 ORTHO05D007175 5.0e-57 225.3 221 57.9
Sopen01g039170 Solanum pennellii HOM05D005854 ORTHO05D007175 1.1e-56 224.2 250 52.0
AUR62023510 Chenopodium quinoa HOM05D005854 ORTHO05D007175 1.5e-56 223.8 237 54.4
SalBow5G1869 Salvia bowleyana HOM05D005854 ORTHO05D007175 4.2e-56 222.2 232 52.2
SalBow6G6433 Salvia bowleyana HOM05D005854 ORTHO05D007175 4.2e-56 222.2 232 52.2
Migut.B01823 Erythranthe guttata HOM05D005854 ORTHO05D007175 1.6e-55 220.3 236 52.1
Lsat_1_v5_gn_7_1520 Lactuca sativa HOM05D005854 ORTHO05D007175 2.7e-55 219.5 237 53.2
Solyc01g095420.3 Solanum lycopersicum HOM05D005854 ORTHO05D007175 3.6e-55 219.2 248 51.6
MBI04_g37933_MAGBIO Magnolia biondii HOM05D005854 ORTHO05D007175 4.7e-55 218.8 240 55.4
PGSC0003DMG400000203 Solanum tuberosum HOM05D005854 ORTHO05D007175 4.7e-55 218.8 237 52.7
Gohir.D03G125200 Gossypium hirsutum HOM05D005854 ORTHO05D007175 1.0e-54 217.6 179 60.9
Nitab4.5_0004613g0050 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.4e-54 217.2 238 52.5
Nitab4.5_0000305g0260 Nicotiana tabacum HOM05D005854 ORTHO05D007175 1.8e-54 216.9 236 51.7
Peaxi162Scf01012g00238 Petunia axillaris HOM05D005854 ORTHO05D007175 6.7e-54 214.9 233 52.4
SGA_v2.0_scaffold11G05711 Striga asiatica HOM05D005854 ORTHO05D007175 6.7e-54 214.9 229 50.7
Os01g0511200 Oryza sativa ssp. japonica HOM05D005854 ORTHO05D007175 2.2e-52 209.9 237 51.9
Zm00001eb249970 Zea mays HOM05D005854 ORTHO05D007175 1.1e-51 207.6 237 52.3
ECA236G4309 Erigeron canadensis HOM05D005854 ORTHO05D007175 4.1e-51 205.7 225 50.7
Aqoxy5G03507 Aquilegia oxysepala HOM05D005854 ORTHO05D007175 9.1e-51 204.5 251 49.0
Rhsim07G0008000 Rhododendron simsii HOM05D005854 ORTHO05D007175 1.0e-49 201.1 251 49.0
unitig_26.g8933 Utricularia gibba HOM05D005854 ORTHO05D007175 1.7e-49 200.3 249 47.4
FAN09G2134 Fragaria x ananassa HOM05D005854 ORTHO05D007175 1.1e-48 197.6 249 47.8
Sp7g19220 Schrenkiella parvula HOM05D005854 ORTHO05D007175 2.2e-44 183.3 125 76.0
Cfa005769 Carpinus fangiana HOM05D005854 ORTHO05D007175 4.0e-38 162.5 200 49.0
Oeu007833.1 Olea europaea HOM05D005854 ORTHO05D007175 5.2e-38 162.2 170 52.9
Dinv32544 Davidia involucrata HOM05D005854 ORTHO05D007175 2.0e-37 160.2 208 48.1
Prupe.6G341300 Prunus persica HOM05D005854 ORTHO05D007175 1.1e-35 154.5 132 62.9
MD12G1238400 Malus domestica HOM05D005854 ORTHO05D007175 1.1e-24 117.9 126 54.0
Actinidia20188 Actinidia chinensis HOM05D005854 ORTHO05D007175 4.0e-22 109.4 227 37.0
Pp3c17_23470 Physcomitrium patens HOM05D005854 ORTHO05D007175 7.5e-21 105.1 198 33.8
AagrBONN_evm.TU.Sc2ySwM_362.2286 Anthoceros agrestis HOM05D005854 ORTHO05D007175 1.9e-19 100.5 169 35.5
Cc00_g15140 Coffea canephora HOM05D005854 ORTHO05D007175 2.7e-18 96.7 130 43.8
CDE04G0249 Ceratophyllum demersum HOM05D005854 ORTHO05D007175 1.3e-17 94.4 132 45.5
TAR369G1106 Trochodendron aralioides HOM05D005854 ORTHO05D007175 6.6e-17 92.0 76 64.5
Lsat_1_v5_gn_3_52500 Lactuca sativa HOM05D005854 ORTHO05D007175 2.1e-15 87.0 79 60.8
CBR_g40874 Chara braunii HOM05D005854 ORTHO05D007175 1.5e-13 80.9 82 50.0
FvH4_6g03230 Fragaria vesca HOM05D005854 ORTHO05D007175 9.9e-13 78.2 97 45.4
Mapoly0007s0267 Marchantia polymorpha HOM05D005854 ORTHO05D007175 2.2e-12 77.0 134 38.1
Lsat_1_v5_gn_4_144561 Lactuca sativa HOM05D005854 ORTHO05D007175 1.3e-09 67.8 115 38.3
FvH4_6g03240 Fragaria vesca HOM05D005854 ORTHO05D007175 1.9e-08 63.9 61 52.5
Nn3g18457 Nelumbo nucifera HOM05D005854 ORTHO05D007175 9.5e-08 61.6 70 44.3
RcHm_v2.0_Chr3g0451651 Rosa chinensis HOM05D005854 ORTHO05D007175 1.1e-06 58.2 64 50.0


User provided reference genes

Program Settings