Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G20280 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 1.5e-89 333.2 211 100.0
AL7G33620 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 4.1e-84 315.1 214 94.4
Carub.0007s2089 Capsella rubella HOM05D004341 ORTHO05D005075 1.5e-81 306.6 211 93.4
CARHR227110 Cardamine hirsuta HOM05D004341 ORTHO05D005075 1.4e-71 273.5 214 84.1
Thhalv10026240m.g Eutrema salsugineum HOM05D004341 ORTHO05D005075 5.8e-70 268.1 214 82.7
Sp7g18640 Schrenkiella parvula HOM05D004341 ORTHO05D005075 3.5e-67 258.8 212 82.1
Aa31LG9G8550 Aethionema arabicum HOM05D004341 ORTHO05D005075 8.1e-64 247.7 211 70.1
BraA01t01141Z Brassica rapa HOM05D004341 ORTHO05D005075 1.8e-63 246.5 209 79.9
A01p11990 Brassica napus HOM05D004341 ORTHO05D005075 2.4e-63 246.1 209 79.4
BcaC09g51324 Brassica carinata HOM05D004341 ORTHO05D005075 9.0e-63 244.2 211 78.7
C01p14250 Brassica napus HOM05D004341 ORTHO05D005075 4.5e-62 241.9 209 79.4
BolC1t01390H Brassica oleracea HOM05D004341 ORTHO05D005075 1.3e-61 240.4 209 78.0
BcaNung03718 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-57 226.9 211 70.6
THA.LOC104806232 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.9e-57 226.5 211 63.5
Manes.16G060700 Manihot esculenta HOM05D004341 ORTHO05D005075 7.6e-54 214.5 218 63.3
Ciclev10016661m.g Citrus clementina HOM05D004341 ORTHO05D005075 4.9e-53 211.8 219 63.5
Gohir.A10G168600 Gossypium hirsutum HOM05D004341 ORTHO05D005075 8.4e-53 211.1 229 54.1
Gohir.D13G218100 Gossypium hirsutum HOM05D004341 ORTHO05D005075 1.1e-52 210.7 229 55.5
Gorai.013G248900 Gossypium raimondii HOM05D004341 ORTHO05D005075 1.1e-52 210.7 229 55.5
Duzib150G1434 Durio zibethinus HOM05D004341 ORTHO05D005075 5.5e-52 208.4 232 60.3
AUR62002184 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.6e-51 206.8 218 61.9
Potri.001G073500 Populus trichocarpa HOM05D004341 ORTHO05D005075 1.6e-51 206.8 127 81.9
TWI15G0268 Tripterygium wilfordii HOM05D004341 ORTHO05D005075 1.6e-51 206.8 211 60.7
Gorai.011G195600 Gossypium raimondii HOM05D004341 ORTHO05D005075 2.7e-51 206.1 229 56.3
Gohir.A13G214400 Gossypium hirsutum HOM05D004341 ORTHO05D005075 4.6e-51 205.3 229 57.2
Gohir.D10G174800 Gossypium hirsutum HOM05D004341 ORTHO05D005075 7.9e-51 204.5 229 56.3
Thecc.09G217200 Theobroma cacao HOM05D004341 ORTHO05D005075 7.9e-51 204.5 226 59.7
AUR62015527 Chenopodium quinoa HOM05D004341 ORTHO05D005075 1.3e-50 203.8 217 61.3
A08p14740 Brassica napus HOM05D004341 ORTHO05D005075 6.7e-50 201.4 196 60.7
BraA08t33460Z Brassica rapa HOM05D004341 ORTHO05D005075 6.7e-50 201.4 196 60.7
Hma1.2p1_0701F.1_g205915 Hydrangea macrophylla HOM05D004341 ORTHO05D005075 6.7e-50 201.4 219 61.6
Lsat_1_v5_gn_3_129240 Lactuca sativa HOM05D004341 ORTHO05D005075 1.1e-49 200.7 211 59.7
GSVIVG01038073001 Vitis vinifera HOM05D004341 ORTHO05D005075 1.1e-49 200.7 213 64.3
Nitab4.5_0000422g0150 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.5e-49 200.3 211 57.3
Cpa.g.c30482 Carica papaya HOM05D004341 ORTHO05D005075 1.9e-49 199.9 211 57.8
EL10Ac3g05823 Beta vulgaris HOM05D004341 ORTHO05D005075 4.3e-49 198.7 217 59.9
Nitab4.5_0000414g0070 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.3e-49 198.7 228 56.1
Oeu062532.1 Olea europaea HOM05D004341 ORTHO05D005075 4.3e-49 198.7 215 59.1
QL11p010678 Quercus lobata HOM05D004341 ORTHO05D005075 4.3e-49 198.7 126 79.4
Cfa001170 Carpinus fangiana HOM05D004341 ORTHO05D005075 5.7e-49 198.4 126 79.4
Lsat_1_v5_gn_4_45480 Lactuca sativa HOM05D004341 ORTHO05D005075 5.7e-49 198.4 215 58.6
HanXRQChr12g0384191 Helianthus annuus HOM05D004341 ORTHO05D005075 7.4e-49 198.0 215 60.0
Oeu020261.1 Olea europaea HOM05D004341 ORTHO05D005075 7.4e-49 198.0 214 59.8
PGR083G1473 Punica granatum HOM05D004341 ORTHO05D005075 7.4e-49 198.0 211 62.6
CiPaw.10G108700 Carya illinoinensis HOM05D004341 ORTHO05D005075 9.6e-49 197.6 127 78.7
Nn1g09858 Nelumbo nucifera HOM05D004341 ORTHO05D005075 1.6e-48 196.8 211 60.7
CAN.G1144.22 Capsicum annuum HOM05D004341 ORTHO05D005075 3.7e-48 195.7 213 55.9
Nitab4.5_0012569g0030 Nicotiana tabacum HOM05D004341 ORTHO05D005075 4.8e-48 195.3 215 60.9
CAN.G359.8 Capsicum annuum HOM05D004341 ORTHO05D005075 1.1e-47 194.1 228 53.1
HanXRQChr13g0422931 Helianthus annuus HOM05D004341 ORTHO05D005075 1.1e-47 194.1 127 78.0
HPP92_006338 Vanilla planifolia HOM05D004341 ORTHO05D005075 1.1e-47 194.1 127 77.2
Hund04610 Selenicereus undatus HOM05D004341 ORTHO05D005075 1.4e-47 193.7 214 55.6
CSS0011539 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 3.1e-47 192.6 229 54.6
Lj7A164T18 Lonicera japonica HOM05D004341 ORTHO05D005075 3.1e-47 192.6 127 77.2
Aqoxy4G00695 Aquilegia oxysepala HOM05D004341 ORTHO05D005075 5.3e-47 191.8 125 77.6
BcaB03g11664 Brassica carinata HOM05D004341 ORTHO05D005075 6.9e-47 191.4 211 69.7
Cc09_g04540 Coffea canephora HOM05D004341 ORTHO05D005075 6.9e-47 191.4 211 55.0
Peaxi162Scf00119g01515 Petunia axillaris HOM05D004341 ORTHO05D005075 6.9e-47 191.4 225 55.1
Ah.07g207810 Amaranthus hybridus HOM05D004341 ORTHO05D005075 1.2e-46 190.7 219 58.9
ECA234G2847 Erigeron canadensis HOM05D004341 ORTHO05D005075 1.2e-46 190.7 227 57.3
ClCG00G000170 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.5e-46 190.3 127 73.2
ClCG10G003420 Citrullus lanatus HOM05D004341 ORTHO05D005075 1.5e-46 190.3 127 73.2
Dinv17497 Davidia involucrata HOM05D004341 ORTHO05D005075 2.0e-46 189.9 219 60.3
Lj4g0017726 Lotus japonicus HOM05D004341 ORTHO05D005075 2.0e-46 189.9 213 63.8
Lj3g0018794 Lotus japonicus HOM05D004341 ORTHO05D005075 3.4e-46 189.1 213 59.2
RcHm_v2.0_Chr5g0022151 Rosa chinensis HOM05D004341 ORTHO05D005075 3.4e-46 189.1 127 74.8
Ca_26283_v3 Cicer arietinum L. HOM05D004341 ORTHO05D005075 4.5e-46 188.7 211 59.2
MELO3C014011.2 Cucumis melo HOM05D004341 ORTHO05D005075 4.5e-46 188.7 231 55.4
VMungo0331G0448 Vigna mungo HOM05D004341 ORTHO05D005075 4.5e-46 188.7 126 75.4
Lj1A1153T31 Lonicera japonica HOM05D004341 ORTHO05D005075 5.8e-46 188.3 127 75.6
Solyc05g018120.2 Solanum lycopersicum HOM05D004341 ORTHO05D005075 5.8e-46 188.3 126 74.6
PGSC0003DMG400019653 Solanum tuberosum HOM05D004341 ORTHO05D005075 5.8e-46 188.3 127 74.0
Sed0011196 Sechium edule HOM05D004341 ORTHO05D005075 7.6e-46 188.0 127 72.4
Solyc05g010570.3 Solanum lycopersicum HOM05D004341 ORTHO05D005075 7.6e-46 188.0 217 58.1
Sopen05g006350 Solanum pennellii HOM05D004341 ORTHO05D005075 7.6e-46 188.0 217 58.1
CANSAT78G0611 Cannabis sativa HOM05D004341 ORTHO05D005075 1.0e-45 187.6 122 75.4
FvH4_3g13420 Fragaria vesca HOM05D004341 ORTHO05D005075 1.0e-45 187.6 127 74.0
FAN21G2305 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.0e-45 187.6 127 74.0
arahy.Tifrunner.gnm1.ann1.22GDSE Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-45 187.2 127 74.0
arahy.Tifrunner.gnm1.ann1.VCV969 Arachis hypogaea HOM05D004341 ORTHO05D005075 1.3e-45 187.2 127 74.0
FAN16G0631 Fragaria x ananassa HOM05D004341 ORTHO05D005075 1.3e-45 187.2 126 73.8
TAR626G1254 Trochodendron aralioides HOM05D004341 ORTHO05D005075 1.3e-45 187.2 222 58.1
Glyma.03G001900 Glycine max HOM05D004341 ORTHO05D005075 2.2e-45 186.4 127 74.8
MBI06_g30999_MAGBIO Magnolia biondii HOM05D004341 ORTHO05D005075 3.8e-45 185.7 127 77.2
SHI16737 Sapria himalayana HOM05D004341 ORTHO05D005075 5.0e-45 185.3 120 75.8
AT1G20000 Arabidopsis thaliana HOM05D004341 ORTHO05D005075 6.5e-45 184.9 212 55.2
Os01g0680400 Oryza sativa ssp. japonica HOM05D004341 ORTHO05D005075 6.5e-45 184.9 128 72.7
Prupe.4G121600 Prunus persica HOM05D004341 ORTHO05D005075 6.5e-45 184.9 127 74.0
arahy.Tifrunner.gnm1.ann1.W1Y39Q Arachis hypogaea HOM05D004341 ORTHO05D005075 8.4e-45 184.5 235 55.3
SalBow5G0282 Salvia bowleyana HOM05D004341 ORTHO05D005075 8.4e-45 184.5 127 74.8
MD10G1223700 Malus domestica HOM05D004341 ORTHO05D005075 1.1e-44 184.1 127 74.0
Phvul.010G058500 Phaseolus vulgaris HOM05D004341 ORTHO05D005075 1.4e-44 183.7 127 73.2
CSS0011039 Camellia sinensis var. sinensis HOM05D004341 ORTHO05D005075 1.9e-44 183.3 224 55.8
CDE04G3252 Ceratophyllum demersum HOM05D004341 ORTHO05D005075 1.9e-44 183.3 127 74.8
Rhsim13G0136700 Rhododendron simsii HOM05D004341 ORTHO05D005075 1.9e-44 183.3 126 75.4
Psat6g047640 Pisum sativum HOM05D004341 ORTHO05D005075 3.2e-44 182.6 211 55.0
vmacro03576 Vaccinium macrocarpon HOM05D004341 ORTHO05D005075 4.2e-44 182.2 126 74.6
Haze_05182 Corylus avellana HOM05D004341 ORTHO05D005075 7.1e-44 181.4 162 61.7
PSO017G7392 Papaver somniferum HOM05D004341 ORTHO05D005075 7.1e-44 181.4 127 72.4
MSTRG.22399 Avicennia marina HOM05D004341 ORTHO05D005075 9.3e-44 181.0 214 53.7
Lalb_Chr06g0163081 Lupinus albus HOM05D004341 ORTHO05D005075 7.9e-43 177.9 218 57.8
Zm00001eb156710 Zea mays HOM05D004341 ORTHO05D005075 7.9e-43 177.9 212 59.9
AL1G32730 Arabidopsis lyrata HOM05D004341 ORTHO05D005075 1.0e-42 177.6 212 55.2
Medtr1g047200 Medicago truncatula HOM05D004341 ORTHO05D005075 1.8e-42 176.8 211 55.5
SGA_v2.0_scaffold28G11752 Striga asiatica HOM05D004341 ORTHO05D005075 1.8e-42 176.8 214 53.7
THA.LOC104812926 Tarenaya hassleriana HOM05D004341 ORTHO05D005075 1.8e-42 176.8 213 56.8
Dinv05280 Davidia involucrata HOM05D004341 ORTHO05D005075 2.3e-42 176.4 220 58.6
PSO210G4911 Papaver somniferum HOM05D004341 ORTHO05D005075 3.9e-42 175.6 124 71.8
BcaB04g18416 Brassica carinata HOM05D004341 ORTHO05D005075 5.1e-42 175.3 176 59.1
Hund11810 Selenicereus undatus HOM05D004341 ORTHO05D005075 8.7e-42 174.5 238 50.0
ECA240G4781 Erigeron canadensis HOM05D006102 ORTHO05D007550 1.9e-41 173.3 115 76.5
Zm00001eb360430 Zea mays HOM05D004341 ORTHO05D005075 3.3e-41 172.6 124 70.2
COL.COLO4_10402 Corchorus olitorius HOM05D004341 ORTHO05D005075 2.2e-40 169.9 217 50.2
ATR0737G165 Amborella trichopoda HOM05D004341 ORTHO05D005075 2.4e-39 166.4 211 55.9
BcaC01g00664 Brassica carinata HOM05D004341 ORTHO05D005075 3.1e-39 166.0 217 63.1
Peaxi162Scf00188g00814 Petunia axillaris HOM05D004341 ORTHO05D005075 4.1e-39 165.6 192 53.6
Sc19g0001970 Simmondsia chinensis HOM05D004341 ORTHO05D005075 6.9e-39 164.9 106 78.3
HPP92_027866 Vanilla planifolia HOM05D004341 ORTHO05D005075 6.9e-39 164.9 111 74.8
unitig_21.g20916 Utricularia gibba HOM05D004341 ORTHO05D005075 1.2e-38 164.1 227 49.8
TPR.G20753 Trifolium pratense HOM05D004341 ORTHO05D005075 2.0e-38 163.3 134 62.7
Dinv14196 Davidia involucrata HOM05D009083 ORTHO05D005075 1.0e-37 161.0 130 66.9
DCAR_007769 Daucus carota HOM05D004341 ORTHO05D005075 1.3e-37 160.6 105 78.1
QL08p059659 Quercus lobata HOM05D004341 ORTHO05D005075 1.1e-36 157.5 125 61.6
CiPaw.02G184500 Carya illinoinensis HOM05D004341 ORTHO05D005075 7.9e-35 151.4 125 58.4
Eucgr.G01564 Eucalyptus grandis HOM05D004341 ORTHO05D005075 7.9e-35 151.4 95 77.9
BcaB04g20259 Brassica carinata HOM05D004341 ORTHO05D005075 5.1e-34 148.7 131 61.8
BolC1t03652H Brassica oleracea HOM05D004341 ORTHO05D005075 6.7e-34 148.3 208 51.0
BcaB04g20244 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-33 147.5 215 47.9
BcaC09g49417 Brassica carinata HOM05D004341 ORTHO05D005075 1.3e-32 144.1 172 52.9
Pp3c14_26520 Physcomitrium patens HOM05D004341 ORTHO05D005075 3.4e-30 136.0 128 60.9
CBR_g22400 Chara braunii HOM05D004341 ORTHO05D005075 1.0e-29 134.4 126 57.1
Lsat_1_v5_gn_1_77761 Lactuca sativa HOM05D004341 ORTHO05D005075 1.7e-29 133.7 101 69.3
FAN07G2754 Fragaria x ananassa HOM05D004341 ORTHO05D005075 2.2e-29 133.3 109 66.1
Sabra01G0051800 Salix brachista HOM05D004341 ORTHO05D005075 8.5e-29 131.3 84 77.4
Mapoly0006s0068 Marchantia polymorpha HOM05D004341 ORTHO05D005075 1.2e-27 127.5 108 62.0
FAN25G3107 Fragaria x ananassa HOM05D004341 ORTHO05D005075 3.6e-27 125.9 98 64.3
TPR.G30192 Trifolium pratense HOM05D004341 ORTHO05D005075 7.9e-27 124.8 127 52.0
Nitab4.5_0015757g0010 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.0e-26 124.4 183 49.7
arahy.Tifrunner.gnm1.ann1.ZMN623 Arachis hypogaea HOM05D004341 ORTHO05D005075 4.4e-25 119.0 84 71.4
SMO115G0310 Selaginella moellendorffii HOM05D004341 ORTHO05D005075 1.3e-24 117.5 103 56.3
Actinidia34783 Actinidia chinensis HOM05D004341 ORTHO05D005075 6.3e-24 115.2 199 42.7
Haze_17072 Corylus avellana HOM05D000046 ORTHO05D005075 6.3e-24 115.2 77 71.4
Lsat_1_v5_gn_1_1241 Lactuca sativa HOM05D004341 ORTHO05D005075 1.8e-23 113.6 177 47.5
BcaB04g20257 Brassica carinata HOM05D004341 ORTHO05D005075 1.1e-20 104.4 79 68.4
Medtr0085s0030 Medicago truncatula HOM05D004341 ORTHO05D005075 9.4e-20 101.3 168 47.6
FAN11G3831 Fragaria x ananassa HOM05D004341 ORTHO05D005075 6.3e-16 88.6 82 56.1
Potri.003G157450 Populus trichocarpa HOM05D004341 ORTHO05D005075 4.1e-15 85.9 48 85.4
BolC3t20569H Brassica oleracea HOM05D001435 ORTHO05D001304 1.6e-14 84.0 65 66.2
Nitab4.5_0015757g0020 Nicotiana tabacum HOM05D004341 ORTHO05D005075 1.6e-14 84.0 150 45.3
Cfa001469 Carpinus fangiana HOM05D001719 ORTHO05D007646 1.0e-13 81.3 74 54.1
Cre01.g011350 Chlamydomonas reinhardtii HOM05D004341 ORTHO05D005075 6.5e-13 78.6 115 39.1
PRCOL_00001421 Prasinoderma coloniale HOM05D004341 ORTHO05D005075 1.5e-12 77.4 113 41.6
BcaB03g11665 Brassica carinata HOM05D004341 ORTHO05D005075 1.9e-12 77.0 106 72.6
CsaV3_3G003450 Cucumis sativus L. HOM05D004341 ORTHO05D005075 5.5e-12 75.5 148 45.3
BcaB03g11666 Brassica carinata HOM05D004341 ORTHO05D005075 1.4e-10 70.9 46 80.4
Oeu020262.1 Olea europaea HOM05D004341 ORTHO05D005075 1.4e-10 70.9 145 45.5
BcaB08g34314 Brassica carinata HOM05D004341 ORTHO05D005075 1.5e-09 67.4 107 71.0
TPR.G20312 Trifolium pratense HOM05D004341 ORTHO05D005075 2.6e-09 66.6 41 70.7
TPR.G36214 Trifolium pratense HOM05D004341 ORTHO05D005075 2.8e-08 63.2 37 75.7
MCO01G288 Micromonas commoda HOM05D004341 ORTHO05D005075 1.1e-07 61.2 94 44.7


User provided reference genes

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