Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G17060 Arabidopsis thaliana HOM05D001878 ORTHO05D001737 6.8e-152 540.8 311 100.0
Carub.0007s2434 Capsella rubella HOM05D001878 ORTHO05D001737 1.3e-147 526.6 311 96.8
AL7G37650 Arabidopsis lyrata HOM05D001878 ORTHO05D001737 1.7e-147 526.2 309 96.4
CARHR223640 Cardamine hirsuta HOM05D001878 ORTHO05D001737 1.7e-134 483.0 312 83.3
Thhalv10025276m.g Eutrema salsugineum HOM05D001878 ORTHO05D001737 6.2e-121 438.0 313 82.7
Aa31LG2G13170 Aethionema arabicum HOM05D001878 ORTHO05D001737 6.7e-115 417.9 314 80.6
BolC1t02491H Brassica oleracea HOM05D001878 ORTHO05D001737 1.6e-113 413.3 314 81.8
BraA01t01951Z Brassica rapa HOM05D001878 ORTHO05D001737 3.4e-111 405.6 314 81.5
C01p25390 Brassica napus HOM05D001887 ORTHO05D003756 5.1e-107 391.7 300 81.3
A01p20250 Brassica napus HOM05D001887 ORTHO05D003756 1.1e-104 384.0 300 81.0
BcaNung00128 Brassica carinata HOM05D001878 ORTHO05D001737 6.5e-102 374.8 309 70.6
THA.LOC104812737 Tarenaya hassleriana HOM05D001878 ORTHO05D001737 2.4e-80 303.1 304 58.9
BcaB04g18385 Brassica carinata HOM05D001878 ORTHO05D001737 1.3e-73 280.8 249 66.3
BcaB04g18388 Brassica carinata HOM05D001878 ORTHO05D001737 1.8e-67 260.4 297 58.6
BolC8t48429H Brassica oleracea HOM05D001887 ORTHO05D003756 4.0e-67 259.2 298 58.1
Aa31LG9G15110 Aethionema arabicum HOM05D001878 ORTHO05D001737 2.9e-62 243.0 310 51.0
BcaC07g38034 Brassica carinata HOM05D001878 ORTHO05D001737 4.1e-48 196.1 262 55.0
Sabra01G0120400 Salix brachista HOM05D001878 ORTHO05D001737 6.9e-19 99.0 210 40.5
BraA08t33268Z Brassica rapa HOM05D001878 ORTHO05D001737 1.2e-18 98.2 131 49.6
COL.COLO4_06677 Corchorus olitorius HOM05D001878 ORTHO05D001737 4.9e-17 92.8 196 38.8
TWI15G0283 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 4.6e-15 86.3 196 37.2
TWI15G0285 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 4.6e-15 86.3 196 37.2
Gohir.A08G162900 Gossypium hirsutum HOM05D001878 ORTHO05D001737 1.0e-14 85.1 195 35.9
Potri.003G083800 Populus trichocarpa HOM05D001878 ORTHO05D001737 1.3e-14 84.7 320 29.7
Gorai.008G230600 Gossypium raimondii HOM05D001878 ORTHO05D001737 1.8e-14 84.3 194 39.7
Potri.001G150600 Populus trichocarpa HOM05D001878 ORTHO05D001737 3.0e-14 83.6 188 39.4
Gohir.D12G215000 Gossypium hirsutum HOM05D001878 ORTHO05D001737 6.7e-14 82.4 194 39.7
Duzib068G1299 Durio zibethinus HOM05D001878 ORTHO05D001737 1.1e-13 81.6 177 36.7
TWI60G1396 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 1.1e-13 81.6 215 35.3
Sabra03G0054300 Salix brachista HOM05D001878 ORTHO05D001737 4.3e-13 79.7 306 30.4
Thecc.03G239800 Theobroma cacao HOM05D001878 ORTHO05D001737 4.3e-13 79.7 173 38.2
Gohir.A12G212500 Gossypium hirsutum HOM05D001878 ORTHO05D001737 5.6e-13 79.3 201 37.3
CAN.G756.42 Capsicum annuum HOM05D001878 ORTHO05D001737 1.3e-12 78.2 73 53.4
MD02G1219900 Malus domestica HOM05D001878 ORTHO05D001737 3.7e-12 76.6 75 56.0
Ciclev10024664m.g Citrus clementina HOM05D001878 ORTHO05D001737 1.1e-11 75.1 213 33.3
Manes.02G045500 Manihot esculenta HOM05D001878 ORTHO05D001737 1.8e-11 74.3 215 33.5
FvH4_7g09240 Fragaria vesca HOM05D001878 ORTHO05D001737 3.1e-11 73.6 136 38.2
Prupe.2G121200 Prunus persica HOM05D001878 ORTHO05D001737 3.1e-11 73.6 76 53.9
MD04G1055300 Malus domestica HOM05D001878 ORTHO05D001737 4.0e-11 73.2 183 35.0
FAN03G2199 Fragaria x ananassa HOM05D001878 ORTHO05D001737 5.3e-11 72.8 134 38.1
FAN06G0367 Fragaria x ananassa HOM05D001878 ORTHO05D001737 6.9e-11 72.4 136 38.2
Ca_21569_v3 Cicer arietinum L. HOM05D001878 ORTHO05D001737 9.0e-11 72.0 80 48.8
MELO3C006287.2 Cucumis melo HOM05D001878 ORTHO05D001737 9.0e-11 72.0 76 52.6
CsaV3_3G010680 Cucumis sativus L. HOM05D001878 ORTHO05D001737 9.0e-11 72.0 76 52.6
FAN10G3306 Fragaria x ananassa HOM05D001878 ORTHO05D001737 9.0e-11 72.0 134 37.3
Gohir.A08G139800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 9.0e-11 72.0 77 51.9
Gohir.D08G160800 Gossypium hirsutum HOM05D001878 ORTHO05D001737 9.0e-11 72.0 76 52.6
FAN10G3061 Fragaria x ananassa HOM05D001878 ORTHO05D001737 1.2e-10 71.6 134 37.3
PGSC0003DMG400001696 Solanum tuberosum HOM05D001878 ORTHO05D001737 1.2e-10 71.6 73 53.4
SalBow4G2533 Salvia bowleyana HOM05D001878 ORTHO05D001737 1.5e-10 71.2 80 52.5
Sabra02G0150600 Salix brachista HOM05D001878 ORTHO05D001737 2.0e-10 70.9 97 44.3
Sp4g26780 Schrenkiella parvula HOM05D001878 ORTHO05D001737 2.0e-10 70.9 86 50.0
Gorai.004G167100 Gossypium raimondii HOM05D001878 ORTHO05D001737 2.6e-10 70.5 104 43.3
Duzib205G1889 Durio zibethinus HOM05D001878 ORTHO05D001737 3.4e-10 70.1 178 36.0
Sed0011776 Sechium edule HOM05D001878 ORTHO05D001737 3.4e-10 70.1 74 51.4
FAN05G2379 Fragaria x ananassa HOM05D001878 ORTHO05D001737 5.8e-10 69.3 128 38.3
Rhsim07G0136200 Rhododendron simsii HOM05D001878 ORTHO05D001737 5.8e-10 69.3 110 44.5
Lalb_Chr12g0210451 Lupinus albus HOM05D001878 ORTHO05D001737 7.6e-10 68.9 129 40.3
PGR031G2290 Punica granatum HOM05D001878 ORTHO05D001737 7.6e-10 68.9 192 32.8
Atru.chr5.102 Acer truncatum HOM05D001878 ORTHO05D001737 1.0e-09 68.6 74 52.7
QL04p028592 Quercus lobata HOM05D001878 ORTHO05D001737 1.0e-09 68.6 137 41.6
QL04p028713 Quercus lobata HOM05D001878 ORTHO05D001737 1.0e-09 68.6 137 41.6
MD06G1046900 Malus domestica HOM05D001878 ORTHO05D001737 1.3e-09 68.2 175 32.6
MD07G1097000 Malus domestica HOM05D001878 ORTHO05D001737 1.3e-09 68.2 119 37.8
MD07G1097300 Malus domestica HOM05D001878 ORTHO05D001737 1.3e-09 68.2 119 37.8
PSO782G1295 Papaver somniferum HOM05D001878 ORTHO05D001737 1.7e-09 67.8 173 34.7
BcaC01g05200 Brassica carinata HOM05D001878 ORTHO05D001737 2.2e-09 67.4 74 51.4
CSS0013278 Camellia sinensis var. sinensis HOM05D001878 ORTHO05D001737 2.2e-09 67.4 112 40.2
Atru.chr9.1204 Acer truncatum HOM05D001878 ORTHO05D001737 2.9e-09 67.0 149 36.2
BcaC01g05199 Brassica carinata HOM05D001878 ORTHO05D001737 3.8e-09 66.6 74 50.0
CiPaw.13G024400 Carya illinoinensis HOM05D001878 ORTHO05D001737 3.8e-09 66.6 76 50.0
Psat4g031080 Pisum sativum HOM05D001878 ORTHO05D001737 3.8e-09 66.6 79 48.1
CANSAT25G3641 Cannabis sativa HOM05D001878 ORTHO05D001737 4.9e-09 66.2 72 51.4
Oeu037430.1 Olea europaea HOM05D001878 ORTHO05D001737 4.9e-09 66.2 121 35.5
Prupe.5G055100 Prunus persica HOM05D001878 ORTHO05D001737 4.9e-09 66.2 175 32.6
Glyma.18G248000 Glycine max HOM05D001878 ORTHO05D001737 6.5e-09 65.9 123 37.4
PSO063G3234 Papaver somniferum HOM05D001878 ORTHO05D001737 6.5e-09 65.9 153 34.6
Sed0021214 Sechium edule HOM05D001878 ORTHO05D001737 6.5e-09 65.9 65 53.8
A03p24870 Brassica napus HOM05D001878 ORTHO05D001737 8.4e-09 65.5 74 51.4
BraA03t11694Z Brassica rapa HOM05D001878 ORTHO05D001737 8.4e-09 65.5 74 51.4
Peaxi162Scf00853g00433 Petunia axillaris HOM05D001878 ORTHO05D001737 8.4e-09 65.5 105 42.9
RcHm_v2.0_Chr7g0205761 Rosa chinensis HOM05D001878 ORTHO05D001737 8.4e-09 65.5 124 37.1
TAR629G0579 Trochodendron aralioides HOM05D001878 ORTHO05D001737 8.4e-09 65.5 178 33.7
C03p29660 Brassica napus HOM05D001878 ORTHO05D001737 1.1e-08 65.1 74 50.0
BolC3t15314H Brassica oleracea HOM05D001878 ORTHO05D001737 1.1e-08 65.1 74 50.0
Duzib268G0102 Durio zibethinus HOM05D001878 ORTHO05D001737 1.1e-08 65.1 123 40.7
Potri.002G139500 Populus trichocarpa HOM05D001878 ORTHO05D001737 1.1e-08 65.1 125 37.6
CiPaw.14G018500 Carya illinoinensis HOM05D001878 ORTHO05D001737 1.4e-08 64.7 114 40.4
COL.COLO4_18392 Corchorus olitorius HOM05D001878 ORTHO05D001737 1.4e-08 64.7 76 47.4
AT2G44730 Arabidopsis thaliana HOM05D001878 ORTHO05D001737 1.9e-08 64.3 78 44.9
BcaC01g05201 Brassica carinata HOM05D001878 ORTHO05D001737 1.9e-08 64.3 74 50.0
DCAR_008328 Daucus carota HOM05D001878 ORTHO05D001737 1.9e-08 64.3 178 31.5
Solyc01g088820.2 Solanum lycopersicum HOM05D001878 ORTHO05D001737 1.9e-08 64.3 73 47.9
Cc08_g11310 Coffea canephora HOM05D001878 ORTHO05D001737 2.5e-08 63.9 177 33.3
FAN01G1421 Fragaria x ananassa HOM05D001878 ORTHO05D001737 2.5e-08 63.9 132 37.1
Hma1.2p1_0632F.1_g192450 Hydrangea macrophylla HOM05D001878 ORTHO05D001737 3.2e-08 63.5 176 35.8
Nn1g05420 Nelumbo nucifera HOM05D001878 ORTHO05D001737 4.2e-08 63.2 107 46.7
vmacro21925 Vaccinium macrocarpon HOM05D001878 ORTHO05D001737 4.2e-08 63.2 158 37.3
HanXRQChr01g0016011 Helianthus annuus HOM05D001878 ORTHO05D001737 5.5e-08 62.8 67 47.8
Lalb_Chr07g0195291 Lupinus albus HOM05D001878 ORTHO05D001737 5.5e-08 62.8 90 38.9
Sopen01g035660 Solanum pennellii HOM05D001878 ORTHO05D001737 5.5e-08 62.8 73 46.6
Cfa011046 Carpinus fangiana HOM05D001878 ORTHO05D001737 7.1e-08 62.4 74 51.4
Haze_02877 Corylus avellana HOM05D001878 ORTHO05D001737 7.1e-08 62.4 74 51.4
Thhalv10001488m.g Eutrema salsugineum HOM05D001878 ORTHO05D001737 7.1e-08 62.4 74 48.6
Glyma.07G254502 Glycine max HOM05D001878 ORTHO05D001737 7.1e-08 62.4 73 49.3
SHI13627 Sapria himalayana HOM05D001878 ORTHO05D001737 7.1e-08 62.4 125 35.2
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 1.2e-07 61.6 175 33.1
Lsat_1_v5_gn_1_84200 Lactuca sativa HOM05D001878 ORTHO05D001737 1.6e-07 61.2 123 34.1
Lalb_Chr07g0177461 Lupinus albus HOM05D001878 ORTHO05D001737 1.6e-07 61.2 63 52.4
Manes.05G056800 Manihot esculenta HOM05D001878 ORTHO05D001737 1.6e-07 61.2 153 34.0
Oeu026349.1 Olea europaea HOM05D001878 ORTHO05D001737 1.6e-07 61.2 116 35.3
AL4G43780 Arabidopsis lyrata HOM05D001878 ORTHO05D001737 2.1e-07 60.8 76 47.4
DCAR_029489 Daucus carota HOM05D001878 ORTHO05D001737 2.1e-07 60.8 119 40.3
Medtr7g081190 Medicago truncatula HOM05D001878 ORTHO05D001737 2.1e-07 60.8 71 49.3
Phvul.008G049300 Phaseolus vulgaris HOM05D001878 ORTHO05D001737 2.1e-07 60.8 154 34.4
TPR.G28130 Trifolium pratense HOM05D001878 ORTHO05D001737 2.1e-07 60.8 65 52.3
TWI14G1354 Tripterygium wilfordii HOM05D001878 ORTHO05D001737 2.1e-07 60.8 75 45.3
Oeu019262.1 Olea europaea HOM05D001878 ORTHO05D001737 2.7e-07 60.5 98 37.8
BolC4t22199H Brassica oleracea HOM05D001878 ORTHO05D001737 3.5e-07 60.1 74 48.6
BraA05t19461Z Brassica rapa HOM05D001878 ORTHO05D001737 3.5e-07 60.1 95 41.1
Oeu060056.1 Olea europaea HOM05D001878 ORTHO05D001737 4.6e-07 59.7 189 32.3
Potri.014G051200 Populus trichocarpa HOM05D001878 ORTHO05D001737 4.6e-07 59.7 93 43.0
Thecc.01G400100 Theobroma cacao HOM05D001878 ORTHO05D001737 4.6e-07 59.7 79 45.6
A05p04860 Brassica napus HOM05D001878 ORTHO05D001737 6.0e-07 59.3 95 41.1
Nn1g00752 Nelumbo nucifera HOM05D001878 ORTHO05D001737 6.0e-07 59.3 67 47.8
Medtr4g117990 Medicago truncatula HOM05D001878 ORTHO05D001737 7.9e-07 58.9 70 48.6
Ciclev10020863m.g Citrus clementina HOM05D001878 ORTHO05D001737 1.0e-06 58.5 77 45.5
Glyma.08G051800 Glycine max HOM05D001878 ORTHO05D001737 1.0e-06 58.5 107 39.3
Lj1g0024989 Lotus japonicus HOM05D001878 ORTHO05D001737 1.0e-06 58.5 132 34.8
VMungo1383G0933 Vigna mungo HOM05D001878 ORTHO05D001737 1.0e-06 58.5 175 30.9
ATR0684G037 Amborella trichopoda HOM05D001878 ORTHO05D001737 1.3e-06 58.2 70 42.9
BcaC02g12281 Brassica carinata HOM05D001878 ORTHO05D001737 1.3e-06 58.2 72 48.6
C04p05690 Brassica napus HOM05D001878 ORTHO05D001737 1.3e-06 58.2 72 48.6
ECA246G4246 Erigeron canadensis HOM05D001878 ORTHO05D001737 1.3e-06 58.2 156 32.7
ECA248G2444 Erigeron canadensis HOM05D001878 ORTHO05D001737 2.3e-06 57.4 100 39.0
Eucgr.E01658 Eucalyptus grandis HOM05D001878 ORTHO05D001737 2.3e-06 57.4 74 44.6
TAR362G0174 Trochodendron aralioides HOM05D001878 ORTHO05D001737 2.3e-06 57.4 65 55.4
Ah.12g053970 Amaranthus hybridus HOM05D001878 ORTHO05D001737 3.0e-06 57.0 68 50.0
Lsat_1_v5_gn_3_15221 Lactuca sativa HOM05D001878 ORTHO05D001737 3.0e-06 57.0 94 38.3
CARHR139940 Cardamine hirsuta HOM05D001878 ORTHO05D001737 3.9e-06 56.6 156 32.7
Glyma.09G245300 Glycine max HOM05D001878 ORTHO05D001737 3.9e-06 56.6 163 30.1
Lalb_Chr13g0290701 Lupinus albus HOM05D001878 ORTHO05D001737 3.9e-06 56.6 186 31.7
MBI04_g13859_MAGBIO Magnolia biondii HOM05D001878 ORTHO05D001737 3.9e-06 56.6 145 33.8
Rhsim01G0141600 Rhododendron simsii HOM05D001878 ORTHO05D001737 5.1e-06 56.2 125 35.2
Lsat_1_v5_gn_1_84280 Lactuca sativa HOM05D001878 ORTHO05D001737 6.7e-06 55.8 111 33.3
Lsat_1_v5_gn_3_15241 Lactuca sativa HOM05D001878 ORTHO05D001737 8.7e-06 55.5 194 27.8


User provided reference genes

Program Settings