Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G14358 Arabidopsis thaliana HOM05D000795 ORTHO05D081441 1.6e-42 175.6 88 100.0
AT1G12940 Arabidopsis thaliana HOM05D000795 ORTHO05D000706 2.3e-20 102.1 54 90.7
AL1G24580 Arabidopsis lyrata HOM05D000795 ORTHO05D000706 6.3e-18 94.0 55 83.6
Carub.0001s1271 Capsella rubella HOM05D000795 ORTHO05D000706 4.5e-16 87.8 54 81.5
Thhalv10007446m.g Eutrema salsugineum HOM05D000795 ORTHO05D000706 1.7e-15 85.9 54 79.6
A08p32540 Brassica napus HOM05D000795 ORTHO05D000706 1.9e-14 82.4 54 75.9
BraA08t35178Z Brassica rapa HOM05D000795 ORTHO05D000706 1.9e-14 82.4 54 75.9
Sp1g11510 Schrenkiella parvula HOM05D000795 ORTHO05D000706 4.2e-14 81.3 54 74.1
C08p15750 Brassica napus HOM05D000795 ORTHO05D000706 9.4e-14 80.1 54 74.1
BolC8t49202H Brassica oleracea HOM05D000795 ORTHO05D000706 9.4e-14 80.1 54 74.1
CARHR013290 Cardamine hirsuta HOM05D000795 ORTHO05D000706 4.3e-11 71.2 54 64.8
Aa31LG1G1840 Aethionema arabicum HOM05D000795 ORTHO05D000706 2.4e-09 65.5 54 63.0
Lsat_1_v5_gn_1_63341 Lactuca sativa HOM05D000795 ORTHO05D000706 9.1e-09 63.5 42 64.3
HanXRQChr01g0018851 Helianthus annuus HOM05D000795 ORTHO05D000706 1.5e-08 62.8 43 65.1
Sabra15G0105100 Salix brachista HOM05D000795 ORTHO05D000706 1.5e-08 62.8 56 57.1
Sabra15G0105200 Salix brachista HOM05D000795 ORTHO05D000706 1.5e-08 62.8 56 57.1
Thecc.02G256000 Theobroma cacao HOM05D000795 ORTHO05D000706 2.6e-08 62.0 47 59.6
Duzib248G0987 Durio zibethinus HOM05D000795 ORTHO05D000706 3.4e-08 61.6 47 59.6
Lsat_1_v5_gn_0_15821 Lactuca sativa HOM05D000795 ORTHO05D000706 3.4e-08 61.6 42 64.3
Lsat_1_v5_gn_1_63320 Lactuca sativa HOM05D000795 ORTHO05D000706 3.4e-08 61.6 41 65.9
THA.LOC104805288 Tarenaya hassleriana HOM05D000795 ORTHO05D000706 4.5e-08 61.2 38 71.1
Potri.015G081300 Populus trichocarpa HOM05D000795 ORTHO05D000706 5.9e-08 60.8 56 53.6
Potri.T124608 Populus trichocarpa HOM05D000795 ORTHO05D000706 5.9e-08 60.8 56 53.6
VMungo0251G1924 Vigna mungo HOM05D000795 ORTHO05D000706 5.9e-08 60.8 37 70.3
COL.COLO4_24229 Corchorus olitorius HOM05D000795 ORTHO05D000706 7.7e-08 60.5 47 57.4
MD13G1096700 Malus domestica HOM05D000795 ORTHO05D000706 7.7e-08 60.5 54 55.6
ClCG05G025540 Citrullus lanatus HOM05D000795 ORTHO05D000706 1.0e-07 60.1 54 51.9
Lj4g0001204 Lotus japonicus HOM05D000795 ORTHO05D000706 1.0e-07 60.1 37 67.6
PGR102G2359 Punica granatum HOM05D000795 ORTHO05D000706 1.0e-07 60.1 55 54.5
COL.COLO4_24230 Corchorus olitorius HOM05D000795 ORTHO05D000706 1.3e-07 59.7 56 53.6
Gohir.D12G148900 Gossypium hirsutum HOM05D000795 ORTHO05D000706 1.3e-07 59.7 47 57.4
Gorai.008G160300 Gossypium raimondii HOM05D000795 ORTHO05D000706 1.3e-07 59.7 47 57.4
Mapoly0020s0038 Marchantia polymorpha HOM05D000795 ORTHO05D000706 1.3e-07 59.7 55 52.7
TWI36G1651 Tripterygium wilfordii HOM05D000795 ORTHO05D000706 1.3e-07 59.7 46 56.5
CANSAT01G2786 Cannabis sativa HOM05D000795 ORTHO05D000706 1.7e-07 59.3 37 70.3
Cpa.g.sc69.88 Carica papaya HOM05D000795 ORTHO05D000706 1.7e-07 59.3 56 55.4
Ciclev10031126m.g Citrus clementina HOM05D000795 ORTHO05D000706 1.7e-07 59.3 56 51.8
Haze_12223 Corylus avellana HOM05D000795 ORTHO05D000706 1.7e-07 59.3 41 61.0
Potri.T124708 Populus trichocarpa HOM05D000795 ORTHO05D000706 1.7e-07 59.3 56 51.8
Gohir.A12G144300 Gossypium hirsutum HOM05D000795 ORTHO05D000706 2.2e-07 58.9 47 57.4
MBI10_g44382_MAGBIO Magnolia biondii HOM05D000795 ORTHO05D000706 2.2e-07 58.9 56 51.8
FvH4_4g25770 Fragaria vesca HOM05D000795 ORTHO05D000706 2.9e-07 58.5 37 67.6
FAN07G2523 Fragaria x ananassa HOM05D000795 ORTHO05D000706 2.9e-07 58.5 37 67.6
FAN12G0819 Fragaria x ananassa HOM05D000795 ORTHO05D000706 2.9e-07 58.5 37 67.6
FAN12G2271 Fragaria x ananassa HOM05D000795 ORTHO05D000706 2.9e-07 58.5 37 67.6
Glyma.18G141900 Glycine max HOM05D000795 ORTHO05D000706 2.9e-07 58.5 47 57.4
PSO017G6495 Papaver somniferum HOM05D000795 ORTHO05D000706 2.9e-07 58.5 37 70.3
PSO478G5194 Papaver somniferum HOM05D000795 ORTHO05D000706 2.9e-07 58.5 37 70.3
Phvul.003G062800 Phaseolus vulgaris HOM05D000795 ORTHO05D000706 2.9e-07 58.5 47 55.3
EL10Ac6g13725 Beta vulgaris HOM05D000795 ORTHO05D000706 3.8e-07 58.2 39 64.1
Eucgr.B03304 Eucalyptus grandis HOM05D000795 ORTHO05D000706 5.0e-07 57.8 39 61.5
Mapoly0054s0098 Marchantia polymorpha HOM05D000795 ORTHO05D000706 5.0e-07 57.8 52 51.9
Prupe.1G249000 Prunus persica HOM05D000795 ORTHO05D000706 5.0e-07 57.8 46 58.7
SalBow8G1960 Salvia bowleyana HOM05D000795 ORTHO05D000706 5.0e-07 57.8 40 60.0
CiPaw.05G187600 Carya illinoinensis HOM05D000795 ORTHO05D000706 6.5e-07 57.4 39 64.1
Glyma.08G284000 Glycine max HOM05D000795 ORTHO05D000706 6.5e-07 57.4 47 55.3
Actinidia15070 Actinidia chinensis HOM05D000795 ORTHO05D000706 8.5e-07 57.0 41 63.4
AUR62003509 Chenopodium quinoa HOM05D000795 ORTHO05D000706 8.5e-07 57.0 38 68.4
AUR62005427 Chenopodium quinoa HOM05D000795 ORTHO05D000706 8.5e-07 57.0 38 65.8
Dinv15256 Davidia involucrata HOM05D000795 ORTHO05D000706 8.5e-07 57.0 45 60.0
ECA234G2533 Erigeron canadensis HOM05D000795 ORTHO05D000706 8.5e-07 57.0 38 65.8
ECA248G2406 Erigeron canadensis HOM05D000795 ORTHO05D000706 8.5e-07 57.0 41 58.5
HanXRQChr12g0383701 Helianthus annuus HOM05D000795 ORTHO05D000706 8.5e-07 57.0 48 54.2
Lalb_Chr05g0228311 Lupinus albus HOM05D000795 ORTHO05D000706 8.5e-07 57.0 44 54.5
Oeu059923.1 Olea europaea HOM05D000795 ORTHO05D000706 8.5e-07 57.0 38 65.8
Oeu059924.1 Olea europaea HOM05D000795 ORTHO05D000706 8.5e-07 57.0 38 65.8
QL03p067355 Quercus lobata HOM05D000795 ORTHO05D000706 8.5e-07 57.0 39 64.1
Atru.chr11.2082 Acer truncatum HOM05D000795 ORTHO05D000706 1.1e-06 56.6 56 50.0
Duzib251G0575 Durio zibethinus HOM05D000795 ORTHO05D000706 1.1e-06 56.6 39 64.1
ECA248G3838 Erigeron canadensis HOM05D000795 ORTHO05D000706 1.1e-06 56.6 43 60.5
Lsat_1_v5_gn_4_4881 Lactuca sativa HOM05D000795 ORTHO05D000706 1.1e-06 56.6 38 65.8
Sc04g0009370 Simmondsia chinensis HOM05D000795 ORTHO05D000706 1.1e-06 56.6 46 58.7
TAR371G1181 Trochodendron aralioides HOM05D000795 ORTHO05D000706 1.1e-06 56.6 37 64.9
Aqoxy3G02844 Aquilegia oxysepala HOM05D000795 ORTHO05D000706 1.4e-06 56.2 43 58.1
EL10Ac6g13720 Beta vulgaris HOM05D000795 ORTHO05D000706 1.4e-06 56.2 38 65.8
Migut.L01472 Erythranthe guttata HOM05D000795 ORTHO05D000706 1.4e-06 56.2 44 56.8
Migut.L01475 Erythranthe guttata HOM05D000795 ORTHO05D000706 1.4e-06 56.2 44 56.8
Migut.O00827 Erythranthe guttata HOM05D000795 ORTHO05D000706 1.4e-06 56.2 44 56.8
Mapoly0020s0041 Marchantia polymorpha HOM05D000795 ORTHO05D000706 1.4e-06 56.2 37 64.9
Mapoly0020s0043 Marchantia polymorpha HOM05D000795 ORTHO05D000706 1.4e-06 56.2 37 64.9
Mapoly0020s0044 Marchantia polymorpha HOM05D000795 ORTHO05D000706 1.4e-06 56.2 37 64.9
Mapoly0020s0045 Marchantia polymorpha HOM05D000795 ORTHO05D000706 1.4e-06 56.2 37 64.9
Mapoly0020s0046 Marchantia polymorpha HOM05D000795 ORTHO05D000706 1.4e-06 56.2 37 64.9
Mapoly1022s0001 Marchantia polymorpha HOM05D000795 ORTHO05D000706 1.4e-06 56.2 37 64.9
Potri.012G087700 Populus trichocarpa HOM05D000795 ORTHO05D000706 1.4e-06 56.2 56 50.0
QL03p058755 Quercus lobata HOM05D000795 ORTHO05D000706 1.4e-06 56.2 39 64.1
Hund25376 Selenicereus undatus HOM05D000795 ORTHO05D000706 1.4e-06 56.2 41 63.4
Eucgr.H02533 Eucalyptus grandis HOM05D000795 ORTHO05D000706 1.9e-06 55.8 37 64.9
Nn4g22682 Nelumbo nucifera HOM05D000795 ORTHO05D000706 1.9e-06 55.8 49 53.1
Hma1.2p1_0223F.1_g094190 Hydrangea macrophylla HOM05D000795 ORTHO05D000706 2.5e-06 55.5 45 53.3
Nitab4.5_0007682g0010 Nicotiana tabacum HOM05D000795 ORTHO05D000706 2.5e-06 55.5 42 54.8
vmacro01145 Vaccinium macrocarpon HOM05D000795 ORTHO05D000706 2.5e-06 55.5 40 57.5
ATR1152G074 Amborella trichopoda HOM05D000795 ORTHO05D000706 3.2e-06 55.1 42 54.8
AT1G08100 Arabidopsis thaliana HOM05D000795 ORTHO05D000706 3.2e-06 55.1 44 54.5
CDE06G2206 Ceratophyllum demersum HOM05D000795 ORTHO05D000706 3.2e-06 55.1 38 60.5
CDE06G2459 Ceratophyllum demersum HOM05D000795 ORTHO05D000706 3.2e-06 55.1 38 60.5
FvH4_4g25780 Fragaria vesca HOM05D000795 ORTHO05D000706 3.2e-06 55.1 37 56.8
FAN12G0627 Fragaria x ananassa HOM05D000795 ORTHO05D000706 3.2e-06 55.1 37 56.8
FAN12G4151 Fragaria x ananassa HOM05D000795 ORTHO05D000706 3.2e-06 55.1 37 56.8
RcHm_v2.0_Chr4g0433231 Rosa chinensis HOM05D000795 ORTHO05D000706 3.2e-06 55.1 41 56.1
SalBow2G2134 Salvia bowleyana HOM05D000795 ORTHO05D000706 3.2e-06 55.1 56 50.0
AL1G18460 Arabidopsis lyrata HOM05D000795 ORTHO05D000706 4.2e-06 54.7 43 55.8
MSTRG.2410 Avicennia marina HOM05D000795 ORTHO05D000706 4.2e-06 54.7 38 60.5
Migut.E00186 Erythranthe guttata HOM05D000795 ORTHO05D000706 4.2e-06 54.7 38 60.5
Oeu012699.1 Olea europaea HOM05D000795 ORTHO05D000706 4.2e-06 54.7 54 51.9
EL10Ac6g13721 Beta vulgaris HOM05D000795 ORTHO05D000706 5.5e-06 54.3 38 60.5
EL10Ac7g16398 Beta vulgaris HOM05D000795 ORTHO05D000706 5.5e-06 54.3 35 62.9
EL10Ac7g16776 Beta vulgaris HOM05D000795 ORTHO05D000706 5.5e-06 54.3 44 56.8
Dinv24815 Davidia involucrata HOM05D000795 ORTHO05D000706 5.5e-06 54.3 37 62.2
Manes.13G027000 Manihot esculenta HOM05D000795 ORTHO05D000706 5.5e-06 54.3 56 53.6
Pp3c22_21990 Physcomitrium patens HOM05D000795 ORTHO05D000706 5.5e-06 54.3 38 55.3
AUR62014088 Chenopodium quinoa HOM05D000795 ORTHO05D000706 7.2e-06 53.9 37 62.2
PGSC0003DMG400016996 Solanum tuberosum HOM05D000795 ORTHO05D000706 7.2e-06 53.9 36 61.1
Thecc.02G256100 Theobroma cacao HOM05D000795 ORTHO05D000706 7.2e-06 53.9 46 54.3
CDE07G1389 Ceratophyllum demersum HOM05D000795 ORTHO05D000706 9.4e-06 53.5 38 57.9
Zm00001eb209690 Zea mays HOM05D000795 ORTHO05D000706 9.4e-06 53.5 37 62.2


User provided reference genes

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