Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 2.3e-117 425.6 220 100.0
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 6.8e-114 414.1 220 96.8
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 4.4e-113 411.4 220 95.5
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 7.6e-113 410.6 220 95.9
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 8.4e-112 407.1 220 95.5
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 7.1e-111 404.1 220 93.6
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 3.5e-110 401.7 220 93.6
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 3.5e-110 401.7 220 93.6
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 3.5e-110 401.7 220 93.6
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 1.7e-109 399.4 220 93.2
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 3.0e-109 398.7 220 92.3
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 1.1e-108 396.7 220 92.3
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 1.1e-108 396.7 220 92.3
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 5.6e-108 394.4 220 92.7
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 2.1e-107 392.5 220 91.4
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 2.1e-107 392.5 220 90.5
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 2.8e-107 392.1 220 90.9
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 3.6e-107 391.7 220 91.4
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 4.7e-107 391.3 220 90.0
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 5.6e-100 367.9 221 85.1
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.3e-99 366.7 220 84.1
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 2.1e-99 365.9 221 85.1
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 6.2e-99 364.4 221 85.1
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 1.4e-98 363.2 220 83.2
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 3.1e-98 362.1 221 83.7
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 4.0e-98 361.7 221 84.2
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 5.3e-98 361.3 221 83.3
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 5.3e-98 361.3 220 82.7
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 5.3e-98 361.3 221 84.6
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 6.9e-98 360.9 221 84.2
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 9.0e-98 360.5 220 83.2
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 9.0e-98 360.5 221 83.3
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 1.2e-97 360.1 217 86.2
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 1.5e-97 359.8 221 83.3
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 1.5e-97 359.8 220 82.7
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 2.0e-97 359.4 220 81.4
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 2.0e-97 359.4 218 81.7
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 2.6e-97 359.0 220 82.3
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 3.4e-97 358.6 220 82.3
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 4.4e-97 358.2 216 82.9
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 5.8e-97 357.8 220 82.7
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 5.8e-97 357.8 220 83.2
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 5.8e-97 357.8 220 82.3
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 9.9e-97 357.1 220 81.4
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 1.7e-96 356.3 221 82.8
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 2.2e-96 355.9 221 82.8
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 3.8e-96 355.1 218 82.6
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 6.4e-96 354.4 220 83.6
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 1.1e-95 353.6 221 81.0
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 1.1e-95 353.6 218 80.3
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.9e-95 352.8 219 81.7
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 1.9e-95 352.8 220 80.9
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 4.2e-95 351.7 220 80.9
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 4.2e-95 351.7 221 82.8
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 5.4e-95 351.3 219 80.8
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 5.4e-95 351.3 220 80.0
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 5.4e-95 351.3 217 80.2
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 5.4e-95 351.3 222 81.5
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 7.1e-95 350.9 214 82.2
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 7.1e-95 350.9 220 80.0
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 1.2e-94 350.1 221 80.1
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 1.2e-94 350.1 221 81.9
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 1.6e-94 349.7 220 80.0
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 2.1e-94 349.4 230 78.7
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 2.1e-94 349.4 219 79.9
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 3.5e-94 348.6 221 80.5
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 3.5e-94 348.6 219 81.3
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 6.0e-94 347.8 219 79.5
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 7.9e-94 347.4 220 80.0
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 7.9e-94 347.4 218 81.2
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 7.9e-94 347.4 218 81.2
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 7.9e-94 347.4 221 80.1
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 7.9e-94 347.4 219 80.8
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 7.9e-94 347.4 219 79.5
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 1.7e-93 346.3 220 79.5
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 1.7e-93 346.3 218 80.7
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 2.3e-93 345.9 214 80.4
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 2.3e-93 345.9 220 80.0
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 3.0e-93 345.5 221 79.2
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 3.0e-93 345.5 219 79.9
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 5.1e-93 344.7 218 80.3
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 5.1e-93 344.7 218 80.3
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 6.6e-93 344.4 219 79.0
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 8.7e-93 344.0 218 78.9
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 8.7e-93 344.0 218 78.9
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 1.1e-92 343.6 219 79.0
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.9e-92 342.8 215 80.9
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 1.9e-92 342.8 218 79.8
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.5e-92 342.4 218 77.5
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 3.3e-92 342.0 220 78.6
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 5.6e-92 341.3 219 78.1
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 5.6e-92 341.3 220 80.0
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 5.6e-92 341.3 220 80.0
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 5.6e-92 341.3 220 78.6
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 7.4e-92 340.9 221 77.8
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 7.4e-92 340.9 220 78.2
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 7.4e-92 340.9 220 78.2
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 1.3e-91 340.1 219 78.5
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 1.6e-91 339.7 221 78.3
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.6e-91 339.7 221 77.8
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 2.1e-91 339.3 219 77.6
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 2.1e-91 339.3 219 78.1
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 76.8
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 8.1e-91 337.4 218 78.0
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.4e-90 336.7 219 76.3
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 1.4e-90 336.7 219 77.6
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 1.8e-90 336.3 218 75.7
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 2.4e-90 335.9 221 76.9
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 4.0e-90 335.1 216 80.1
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 4.0e-90 335.1 219 76.7
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 4.0e-90 335.1 220 78.6
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 5.3e-90 334.7 220 77.3
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.2e-89 333.6 222 79.3
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 1.5e-89 333.2 218 76.1
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 2.0e-89 332.8 220 76.4
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 2.0e-89 332.8 226 76.5
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 2.0e-89 332.8 223 75.8
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 2.6e-89 332.4 219 77.2
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 5.8e-89 331.3 220 76.4
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 1.3e-80 303.5 175 81.7
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 2.9e-80 302.4 220 71.8
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 8.4e-80 300.8 163 89.0
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 3.2e-79 298.9 226 68.6
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 3.3e-76 288.9 221 69.7
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 4.3e-76 288.5 194 74.2
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 4.5e-73 278.5 165 80.6
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 7.6e-73 277.7 192 72.4
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 1.7e-72 276.6 211 68.7
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 2.9e-72 275.8 163 83.4
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 2.5e-71 272.7 172 76.7
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 9.3e-71 270.8 169 76.9
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 3.6e-70 268.9 169 76.9
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 5.0e-64 248.4 220 64.1
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 3.0e-61 239.2 219 60.7
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.2e-57 227.3 219 58.9
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 1.9e-55 219.9 220 58.2
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 1.1e-47 194.1 211 51.7
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 6.1e-46 188.3 211 51.7
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 6.7e-45 184.9 127 73.2
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.4e-42 177.2 150 56.7
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 3.2e-39 166.0 139 67.6
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 1.2e-28 131.0 105 69.5
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.8e-13 80.5 58 67.2
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.8e-13 80.5 58 67.2
Aa31LG9G5680 Aethionema arabicum HOM05D001772 ORTHO05D000476 3.4e-12 76.3 56 76.8
Nitab4.5_0014403g0020 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.6e-06 57.4 64 54.7


User provided reference genes

Program Settings