Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G09620 Arabidopsis thaliana HOM05D007304 ORTHO05D009233 7.1e-124 447.2 213 100.0
AL6G43210 Arabidopsis lyrata HOM05D007304 ORTHO05D009233 7.3e-113 410.6 213 93.4
Carub.0006s2806 Capsella rubella HOM05D007304 ORTHO05D009233 1.6e-112 409.5 211 92.4
BraA03t12064Z Brassica rapa HOM05D007304 ORTHO05D009233 1.3e-104 383.3 212 86.3
C03p34620 Brassica napus HOM05D007304 ORTHO05D009233 1.1e-103 380.2 212 84.9
BcaC01g04711 Brassica carinata HOM05D007304 ORTHO05D009233 2.4e-103 379.0 211 85.3
CARHR260470 Cardamine hirsuta HOM05D007304 ORTHO05D009233 4.0e-103 378.3 212 86.8
BolC3t15773H Brassica oleracea HOM05D007304 ORTHO05D009233 5.3e-103 377.9 211 84.8
Sp6g07990 Schrenkiella parvula HOM05D007304 ORTHO05D009233 6.9e-103 377.5 213 86.4
A03p28640 Brassica napus HOM05D007304 ORTHO05D009233 2.0e-102 375.9 212 84.9
Thhalv10028979m.g Eutrema salsugineum HOM05D007304 ORTHO05D009233 3.8e-93 345.1 213 80.3
Aa31LG9G14900 Aethionema arabicum HOM05D007304 ORTHO05D009233 3.1e-87 325.5 211 73.0
THA.LOC104816302 Tarenaya hassleriana HOM05D007304 ORTHO05D009233 3.5e-83 312.0 211 70.6
BcaB01g02784 Brassica carinata HOM05D007304 ORTHO05D009233 9.3e-76 287.3 227 63.9
Cfa018186 Carpinus fangiana HOM05D007304 ORTHO05D009233 2.5e-68 262.7 218 59.6
Manes.02G191500 Manihot esculenta HOM05D007304 ORTHO05D009233 3.2e-68 262.3 218 59.6
TPR.G8829 Trifolium pratense HOM05D007304 ORTHO05D009233 9.4e-68 260.8 218 61.5
VMungo0720G1999 Vigna mungo HOM05D007304 ORTHO05D009233 1.2e-67 260.4 218 61.0
CiPaw.16G062000 Carya illinoinensis HOM05D007304 ORTHO05D009233 7.9e-67 257.7 218 58.3
Ca_10612_v3 Cicer arietinum L. HOM05D007304 ORTHO05D009233 1.8e-66 256.5 218 60.1
Phvul.007G089900 Phaseolus vulgaris HOM05D007304 ORTHO05D009233 3.9e-66 255.4 214 59.8
CsaV3_2G033470 Cucumis sativus L. HOM05D007304 ORTHO05D009233 5.1e-66 255.0 221 57.0
MELO3C008119.2 Cucumis melo HOM05D007304 ORTHO05D009233 6.7e-66 254.6 218 58.3
Thecc.08G182300 Theobroma cacao HOM05D007304 ORTHO05D009233 2.0e-65 253.1 218 57.8
Sed0026932 Sechium edule HOM05D007304 ORTHO05D009233 3.3e-65 252.3 220 58.2
Glyma.20G175900 Glycine max HOM05D007304 ORTHO05D009233 4.3e-65 251.9 218 58.7
PGSC0003DMG400009226 Solanum tuberosum HOM05D007304 ORTHO05D009233 4.3e-65 251.9 216 57.9
Sopen11g009380 Solanum pennellii HOM05D007304 ORTHO05D009233 5.7e-65 251.5 216 57.9
Lj5g0021067 Lotus japonicus HOM05D007304 ORTHO05D009233 7.4e-65 251.1 220 58.2
arahy.Tifrunner.gnm1.ann1.W17VPE Arachis hypogaea HOM05D007304 ORTHO05D009233 9.7e-65 250.8 214 58.9
Gohir.A02G060400 Gossypium hirsutum HOM05D007304 ORTHO05D009233 9.7e-65 250.8 217 58.1
Potri.013G113500 Populus trichocarpa HOM05D007304 ORTHO05D009233 1.7e-64 250.0 217 59.4
TAR376G0332 Trochodendron aralioides HOM05D007304 ORTHO05D009233 2.2e-64 249.6 223 56.5
ClCG11G008190 Citrullus lanatus HOM05D007304 ORTHO05D009233 3.7e-64 248.8 218 56.4
Lalb_Chr06g0162071 Lupinus albus HOM05D007304 ORTHO05D009233 3.7e-64 248.8 218 57.8
Medtr1g096340 Medicago truncatula HOM05D007304 ORTHO05D009233 3.7e-64 248.8 214 58.4
QL02p033889 Quercus lobata HOM05D007304 ORTHO05D009233 3.7e-64 248.8 219 58.0
AUR62023569 Chenopodium quinoa HOM05D007304 ORTHO05D009233 4.8e-64 248.4 222 55.4
CSS0049262 Camellia sinensis var. sinensis HOM05D007304 ORTHO05D009233 8.2e-64 247.7 215 56.3
Duzib177G0769 Durio zibethinus HOM05D007304 ORTHO05D009233 8.2e-64 247.7 224 57.6
arahy.Tifrunner.gnm1.ann1.E78XAF Arachis hypogaea HOM05D007304 ORTHO05D009233 1.4e-63 246.9 214 57.9
Gorai.005G074700 Gossypium raimondii HOM05D007304 ORTHO05D009233 1.4e-63 246.9 217 57.6
GSVIVG01034475001 Vitis vinifera HOM05D007304 ORTHO05D009233 1.8e-63 246.5 216 56.9
Peaxi162Scf00310g00614 Petunia axillaris HOM05D007304 ORTHO05D009233 4.1e-63 245.4 220 55.5
Psat6g187320 Pisum sativum HOM05D007304 ORTHO05D009233 6.9e-63 244.6 222 57.7
AUR62004650 Chenopodium quinoa HOM05D007304 ORTHO05D009233 1.2e-62 243.8 222 55.4
SalBow6G2896 Salvia bowleyana HOM05D007304 ORTHO05D009233 1.5e-62 243.4 217 54.8
Nitab4.5_0000422g0040 Nicotiana tabacum HOM05D007304 ORTHO05D009233 2.0e-62 243.0 219 55.3
Ciclev10002467m.g Citrus clementina HOM05D007304 ORTHO05D009233 2.6e-62 242.7 218 56.4
COL.COLO4_22675 Corchorus olitorius HOM05D007304 ORTHO05D009233 3.4e-62 242.3 193 59.6
CANSAT25G3778 Cannabis sativa HOM05D007304 ORTHO05D009233 1.3e-61 240.4 218 58.3
Haze_17932 Corylus avellana HOM05D007304 ORTHO05D009233 1.7e-61 240.0 213 55.9
CAN.G1530.5 Capsicum annuum HOM05D007304 ORTHO05D009233 2.2e-61 239.6 219 54.8
Nitab4.5_0000560g0190 Nicotiana tabacum HOM05D007304 ORTHO05D009233 2.2e-61 239.6 221 56.1
Migut.N03345 Erythranthe guttata HOM05D007304 ORTHO05D009233 3.8e-61 238.8 216 55.6
Atru.chr13.1788 Acer truncatum HOM05D007304 ORTHO05D009233 5.0e-61 238.4 218 55.0
Atru.chr13.1792 Acer truncatum HOM05D007304 ORTHO05D009233 5.0e-61 238.4 218 55.0
EL10Ac8g20249 Beta vulgaris HOM05D007304 ORTHO05D009233 6.5e-61 238.0 165 68.5
RhsimUnG0069500 Rhododendron simsii HOM05D007304 ORTHO05D009233 2.5e-60 236.1 215 56.3
TWI32G0836 Tripterygium wilfordii HOM05D007304 ORTHO05D009233 4.2e-60 235.3 216 56.5
Aqoxy5G02599 Aquilegia oxysepala HOM05D007304 ORTHO05D009233 5.5e-60 235.0 148 68.2
PGR102G2268 Punica granatum HOM05D007304 ORTHO05D009233 9.4e-60 234.2 222 54.1
Rhsim11G0060100 Rhododendron simsii HOM05D007304 ORTHO05D009233 9.4e-60 234.2 215 55.8
MBI17_g27205_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 1.2e-59 233.8 225 53.3
Hund27084 Selenicereus undatus HOM05D007304 ORTHO05D009233 7.9e-59 231.1 145 71.7
Ah.07g202740 Amaranthus hybridus HOM05D007304 ORTHO05D009233 1.4e-58 230.3 213 53.5
MSTRG.22445 Avicennia marina HOM05D007304 ORTHO05D009233 1.4e-58 230.3 217 52.5
DCAR_011537 Daucus carota HOM05D007304 ORTHO05D009233 1.4e-58 230.3 167 62.3
Gohir.D02G065833 Gossypium hirsutum HOM05D007304 ORTHO05D009233 1.8e-58 229.9 190 58.4
Nn5g27732 Nelumbo nucifera HOM05D007304 ORTHO05D009233 1.8e-58 229.9 180 60.0
SGA_v2.0_scaffold149G36602 Striga asiatica HOM05D007304 ORTHO05D009233 1.8e-58 229.9 214 56.5
Oeu039601.1 Olea europaea HOM05D007304 ORTHO05D009233 5.1e-58 228.4 219 53.9
Cc10_g11390 Coffea canephora HOM05D007304 ORTHO05D009233 6.7e-58 228.0 158 63.9
FAN04G0833 Fragaria x ananassa HOM05D007304 ORTHO05D009233 2.0e-57 226.5 215 53.5
PSO063G3154 Papaver somniferum HOM05D007304 ORTHO05D009233 2.0e-57 226.5 214 54.2
Sabra13G0096200 Salix brachista HOM05D007304 ORTHO05D009233 2.0e-57 226.5 197 58.9
FAN13G2406 Fragaria x ananassa HOM05D007304 ORTHO05D009233 3.3e-57 225.7 215 53.5
Lj4P501T9 Lonicera japonica HOM05D007304 ORTHO05D009233 3.3e-57 225.7 171 61.4
PSO017G3329 Papaver somniferum HOM05D007304 ORTHO05D009233 3.3e-57 225.7 214 53.3
FvH4_5g27630 Fragaria vesca HOM05D007304 ORTHO05D009233 7.4e-57 224.6 215 53.0
Lsat_1_v5_gn_6_109640 Lactuca sativa HOM05D007304 ORTHO05D009233 1.7e-56 223.4 212 53.8
RcHm_v2.0_Chr7g0219041 Rosa chinensis HOM05D007304 ORTHO05D009233 2.2e-56 223.0 214 51.9
MD05G1041300 Malus domestica HOM05D007304 ORTHO05D009233 8.2e-56 221.1 197 55.3
ECA246G3843 Erigeron canadensis HOM05D007304 ORTHO05D009233 7.0e-55 218.0 218 55.0
Actinidia29417 Actinidia chinensis HOM05D004490 ORTHO05D005353 9.1e-55 217.6 201 56.2
Dinv41708 Davidia involucrata HOM05D007304 ORTHO05D009233 1.6e-54 216.9 205 55.6
SEGI_32747 Sequoiadendron giganteum HOM05D007304 ORTHO05D009233 2.9e-53 212.6 149 66.4
HanXRQChr05g0150521 Helianthus annuus HOM05D007304 ORTHO05D009233 1.9e-52 209.9 214 51.9
HPP92_003142 Vanilla planifolia HOM05D007304 ORTHO05D009233 7.2e-52 208.0 147 61.9
Zm00001eb063940 Zea mays HOM05D007304 ORTHO05D009233 6.1e-51 204.9 157 59.2
Eucgr.F04126 Eucalyptus grandis HOM05D007304 ORTHO05D009233 5.2e-50 201.8 195 53.8
Sc26g0000380 Simmondsia chinensis HOM05D007304 ORTHO05D009233 8.8e-50 201.1 162 55.6
Os03g0838900 Oryza sativa ssp. japonica HOM05D007304 ORTHO05D009233 1.5e-44 183.7 167 50.3
Mapoly0175s0009 Marchantia polymorpha HOM05D007304 ORTHO05D009233 2.3e-42 176.4 175 47.4
SMO200G0124 Selaginella moellendorffii HOM05D007304 ORTHO05D009233 2.6e-41 172.9 134 53.7
Cpa.g.sc66.48 Carica papaya HOM05D007304 ORTHO05D009233 3.5e-38 162.5 127 63.0
unitig_21.g20192 Utricularia gibba HOM05D007304 ORTHO05D009233 8.5e-37 157.9 137 51.8
AagrBONN_evm.TU.Sc2ySwM_117.12 Anthoceros agrestis HOM05D007304 ORTHO05D009233 2.7e-35 152.9 144 47.9
Pp3c24_12240 Physcomitrium patens HOM05D007304 ORTHO05D009233 2.2e-32 143.3 135 48.1
CDE02G2755 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.2e-27 127.5 82 65.9
Cre10.g445100 Chlamydomonas reinhardtii HOM05D007304 ORTHO05D009233 1.6e-27 127.1 146 40.4
Prupe.8G057100 Prunus persica HOM05D007304 ORTHO05D009233 2.2e-24 116.7 145 44.8
SalBow6G1917 Salvia bowleyana HOM05D007304 ORTHO05D009233 4.3e-20 102.4 138 40.6
Solyc11g017430.3 Solanum lycopersicum HOM05D007304 ORTHO05D009233 4.3e-20 102.4 52 84.6
MCO03G180 Micromonas commoda HOM05D007304 ORTHO05D009233 2.1e-19 100.1 158 34.2
MBI11_g39361_MAGBIO Magnolia biondii HOM05D007304 ORTHO05D009233 1.7e-16 90.5 56 73.2
MD10G1047700 Malus domestica HOM05D007304 ORTHO05D009233 1.8e-10 70.5 44 68.2
Zm00001eb272990 Zea mays HOM05D007304 ORTHO05D009233 8.3e-08 61.6 70 42.9
AUR62006400 Chenopodium quinoa HOM05D000161 ORTHO05D000111 2.7e-06 56.6 76 32.9


User provided reference genes

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