Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G09520 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 1.2e-288 995.7 493 100.0
Carub.0006s2794 Capsella rubella HOM05D002267 ORTHO05D005902 1.7e-269 932.2 495 93.5
AL6G43080 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.7e-269 931.0 493 93.9
CARHR260400 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.2e-267 926.0 493 92.7
BcaB07g30054 Brassica carinata HOM05D002267 ORTHO05D005902 3.0e-266 921.4 491 92.5
AL5G20480 Arabidopsis lyrata HOM05D002267 ORTHO05D005902 3.3e-265 917.9 491 92.7
A02p37120 Brassica napus HOM05D002267 ORTHO05D005902 5.6e-265 917.1 491 92.5
Thhalv10004074m.g Eutrema salsugineum HOM05D002267 ORTHO05D005902 2.8e-264 914.8 491 91.6
AT3G30841 Arabidopsis thaliana HOM05D002267 ORTHO05D005902 8.0e-264 913.3 491 91.4
BolC2t11669H Brassica oleracea HOM05D002267 ORTHO05D005902 8.9e-263 909.8 490 91.6
BolC7t44387H Brassica oleracea HOM05D002267 ORTHO05D005902 8.9e-263 909.8 491 90.6
BraA02t08698Z Brassica rapa HOM05D002267 ORTHO05D005902 8.9e-263 909.8 499 91.0
BraA06t26877Z Brassica rapa HOM05D002267 ORTHO05D005902 8.9e-263 909.8 492 90.4
BcaC06g33731 Brassica carinata HOM05D002267 ORTHO05D005902 1.2e-262 909.4 489 91.0
A06p39620 Brassica napus HOM05D002267 ORTHO05D005902 2.6e-262 908.3 492 90.2
C07p38670 Brassica napus HOM05D002267 ORTHO05D005902 5.8e-262 907.1 491 90.4
C02p56120 Brassica napus HOM05D002267 ORTHO05D005902 2.4e-260 901.7 492 90.9
Aa31LG2G3660 Aethionema arabicum HOM05D002267 ORTHO05D005902 9.5e-249 863.2 497 85.9
Cpa.g.sc652.3 Carica papaya HOM05D002267 ORTHO05D005902 1.7e-242 842.4 497 83.7
THA.LOC104805546 Tarenaya hassleriana HOM05D002267 ORTHO05D005902 1.1e-241 839.7 494 85.4
BcaB07g30055 Brassica carinata HOM05D002267 ORTHO05D005902 1.4e-239 832.8 440 92.3
DCAR_007527 Daucus carota HOM05D002267 ORTHO05D005902 9.0e-239 830.1 491 81.1
Sp2g18250 Schrenkiella parvula HOM05D002267 ORTHO05D005902 4.9e-237 824.3 444 91.7
Thecc.07G119800 Theobroma cacao HOM05D002267 ORTHO05D005902 2.4e-236 822.0 495 82.2
Hund16106 Selenicereus undatus HOM05D002267 ORTHO05D005902 4.2e-236 821.2 493 81.1
COL.COLO4_17522 Corchorus olitorius HOM05D002267 ORTHO05D005902 5.4e-236 820.8 485 82.5
Dinv34871 Davidia involucrata HOM05D002267 ORTHO05D005902 1.6e-235 819.3 490 81.4
Duzib213G0616 Durio zibethinus HOM05D002267 ORTHO05D005902 1.6e-235 819.3 496 81.2
CANSAT64G2636 Cannabis sativa HOM05D002267 ORTHO05D005902 6.0e-235 817.4 497 81.3
Actinidia36296 Actinidia chinensis HOM05D002267 ORTHO05D005902 7.8e-235 817.0 489 80.6
Gorai.002G053200 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.0e-234 816.6 494 81.6
ClCG11G005190 Citrullus lanatus HOM05D002267 ORTHO05D005902 1.3e-234 816.2 495 80.8
vmacro05590 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 3.0e-234 815.1 489 81.0
Gohir.D13G154300 Gossypium hirsutum HOM05D002267 ORTHO05D005902 3.9e-234 814.7 494 80.8
CiPaw.04G004900 Carya illinoinensis HOM05D002267 ORTHO05D005902 6.6e-234 813.9 494 80.0
Gohir.D01G042400 Gossypium hirsutum HOM05D002267 ORTHO05D005902 1.1e-233 813.1 495 81.2
Gorai.013G174300 Gossypium raimondii HOM05D002267 ORTHO05D005902 1.1e-233 813.1 494 80.8
AUR62014559 Chenopodium quinoa HOM05D002267 ORTHO05D005902 1.9e-233 812.4 489 80.8
Gohir.A01G052800 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.5e-233 812.0 494 81.0
CsaV3_5G038940 Cucumis sativus L. HOM05D002267 ORTHO05D005902 4.3e-233 811.2 496 80.4
HanXRQChr17g0559871 Helianthus annuus HOM05D002267 ORTHO05D005902 4.3e-233 811.2 494 80.8
AUR62008939 Chenopodium quinoa HOM05D002267 ORTHO05D005902 9.6e-233 810.1 489 80.8
PGR042G2823 Punica granatum HOM05D002267 ORTHO05D005902 9.6e-233 810.1 492 79.9
Sed0022523 Sechium edule HOM05D002267 ORTHO05D005902 9.6e-233 810.1 495 79.8
Gohir.A13G150000 Gossypium hirsutum HOM05D002267 ORTHO05D005902 2.1e-232 808.9 494 80.4
PSO541G0287 Papaver somniferum HOM05D002267 ORTHO05D005902 3.6e-232 808.1 493 79.3
Cfa007986 Carpinus fangiana HOM05D002267 ORTHO05D005902 4.8e-232 807.7 494 79.1
FvH4_6g45710 Fragaria vesca HOM05D002267 ORTHO05D005902 4.8e-232 807.7 492 80.3
Ciclev10011558m.g Citrus clementina HOM05D002267 ORTHO05D005902 6.2e-232 807.4 486 80.5
Atru.chr1.1114 Acer truncatum HOM05D002267 ORTHO05D005902 1.4e-231 806.2 491 80.0
EL10Ac2g04655 Beta vulgaris HOM05D002267 ORTHO05D005902 1.4e-231 806.2 489 81.0
Lj2A1079T37 Lonicera japonica HOM05D002267 ORTHO05D005902 3.1e-231 805.1 491 79.6
Potri.017G109500 Populus trichocarpa HOM05D002267 ORTHO05D005902 3.1e-231 805.1 490 80.2
Sopen06g001330 Solanum pennellii HOM05D002267 ORTHO05D005902 4.0e-231 804.7 493 79.1
QL02p053833 Quercus lobata HOM05D002267 ORTHO05D005902 5.3e-231 804.3 487 79.5
FAN14G5533 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.9e-231 803.9 492 79.9
Potri.004G106200 Populus trichocarpa HOM05D002267 ORTHO05D005902 6.9e-231 803.9 492 79.9
Haze_14088 Corylus avellana HOM05D002267 ORTHO05D005902 9.0e-231 803.5 494 78.7
FAN09G4431 Fragaria x ananassa HOM05D002267 ORTHO05D005902 9.0e-231 803.5 492 79.9
Lsat_1_v5_gn_2_86320 Lactuca sativa HOM05D002267 ORTHO05D005902 9.0e-231 803.5 492 80.5
Nitab4.5_0011661g0010 Nicotiana tabacum HOM05D002267 ORTHO05D005902 2.0e-230 802.4 493 78.7
Solyc06g005370.3 Solanum lycopersicum HOM05D002267 ORTHO05D005902 3.4e-230 801.6 493 78.9
TAR629G0265 Trochodendron aralioides HOM05D002267 ORTHO05D005902 4.5e-230 801.2 492 79.5
PSO675G5323 Papaver somniferum HOM05D002267 ORTHO05D005902 5.8e-230 800.8 493 78.5
TWI34G0765 Tripterygium wilfordii HOM05D002267 ORTHO05D005902 7.6e-230 800.4 495 79.8
Hund16105 Selenicereus undatus HOM05D002267 ORTHO05D005902 9.9e-230 800.0 531 75.5
RcHm_v2.0_Chr2g0163861 Rosa chinensis HOM05D002267 ORTHO05D005902 1.3e-229 799.7 492 79.7
PGSC0003DMG400003469 Solanum tuberosum HOM05D002267 ORTHO05D005902 1.3e-229 799.7 493 78.3
Aqoxy3G03816 Aquilegia oxysepala HOM05D002267 ORTHO05D005902 2.2e-229 798.9 492 78.0
arahy.Tifrunner.gnm1.ann1.Y9SFAF Arachis hypogaea HOM05D002267 ORTHO05D005902 2.2e-229 798.9 488 79.3
MD17G1071600 Malus domestica HOM05D002267 ORTHO05D005902 2.2e-229 798.9 494 79.4
Lalb_Chr04g0258191 Lupinus albus HOM05D002267 ORTHO05D005902 3.8e-229 798.1 487 80.7
Sabra04G0076200 Salix brachista HOM05D002267 ORTHO05D005902 8.4e-229 797.0 530 75.5
MELO3C022075.2 Cucumis melo HOM05D002267 ORTHO05D005902 1.4e-228 796.2 488 79.7
arahy.Tifrunner.gnm1.ann1.D1YG1E Arachis hypogaea HOM05D002267 ORTHO05D005902 1.9e-228 795.8 488 79.3
Eucgr.J01450 Eucalyptus grandis HOM05D002267 ORTHO05D005902 1.9e-228 795.8 496 78.8
FAN26G1557 Fragaria x ananassa HOM05D002267 ORTHO05D005902 2.4e-228 795.4 492 78.7
Lj1g0004668 Lotus japonicus HOM05D002267 ORTHO05D005902 1.2e-227 793.1 487 80.5
Lalb_Chr17g0336641 Lupinus albus HOM05D002267 ORTHO05D005902 1.6e-227 792.7 487 79.9
SalBow1G1113 Salvia bowleyana HOM05D002267 ORTHO05D005902 2.7e-227 792.0 489 79.3
Medtr7g019260 Medicago truncatula HOM05D002267 ORTHO05D005902 4.6e-227 791.2 487 80.5
CAN.G185.18 Capsicum annuum HOM05D002267 ORTHO05D005902 6.0e-227 790.8 494 77.5
FAN23G1730 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.8e-226 789.3 492 78.7
Oeu049334.1 Olea europaea HOM05D002267 ORTHO05D005902 3.0e-226 788.5 492 78.9
Ah.10g037400 Amaranthus hybridus HOM05D002267 ORTHO05D005902 3.9e-226 788.1 489 79.3
Migut.K00870 Erythranthe guttata HOM05D002267 ORTHO05D005902 8.7e-226 786.9 489 78.9
Glyma.18G279400 Glycine max HOM05D002267 ORTHO05D005902 8.7e-226 786.9 487 79.1
Cc03_g12570 Coffea canephora HOM05D002267 ORTHO05D005902 1.5e-225 786.2 490 77.8
Manes.02G064400 Manihot esculenta HOM05D002267 ORTHO05D005902 1.5e-225 786.2 492 78.7
Psat3g192200 Pisum sativum HOM05D002267 ORTHO05D005902 1.5e-225 786.2 487 79.9
SGA_v2.0_scaffold62G21549 Striga asiatica HOM05D002267 ORTHO05D005902 1.5e-225 786.2 498 77.9
VMungo1383G0144 Vigna mungo HOM05D002267 ORTHO05D005902 1.9e-225 785.8 487 78.6
Nitab4.5_0002077g0130 Nicotiana tabacum HOM05D002267 ORTHO05D005902 4.3e-225 784.6 508 75.6
Peaxi162Scf00465g00103 Petunia axillaris HOM05D002267 ORTHO05D005902 9.6e-225 783.5 505 76.4
Ca_06721_v3 Cicer arietinum L. HOM05D002267 ORTHO05D005902 4.8e-224 781.2 487 79.3
MSTRG.15422 Avicennia marina HOM05D002267 ORTHO05D005902 5.3e-223 777.7 490 78.4
Sc14g0003340 Simmondsia chinensis HOM05D002267 ORTHO05D005902 9.0e-223 776.9 492 77.0
ECA238G0812 Erigeron canadensis HOM05D002267 ORTHO05D005902 9.9e-222 773.5 476 79.8
Phvul.008G021600 Phaseolus vulgaris HOM05D002267 ORTHO05D005902 9.9e-222 773.5 487 77.8
MBI14_g41042_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 9.3e-220 766.9 494 76.1
ATR0824G083 Amborella trichopoda HOM05D002267 ORTHO05D005902 3.5e-219 765.0 489 75.7
HPP92_013287 Vanilla planifolia HOM05D002267 ORTHO05D005902 3.3e-217 758.4 489 75.7
CDE02G3890 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 1.9e-212 742.7 491 74.5
CDE04G2341 Ceratophyllum demersum HOM05D002267 ORTHO05D005902 4.2e-212 741.5 485 74.8
Zm00001eb137710 Zea mays HOM05D002267 ORTHO05D005902 3.9e-210 734.9 512 72.1
SEGI_04709 Sequoiadendron giganteum HOM05D002267 ORTHO05D005902 3.3e-209 731.9 492 73.6
Dinv33904 Davidia involucrata HOM05D002267 ORTHO05D005902 3.1e-207 725.3 440 80.9
HanXRQChr07g0200151 Helianthus annuus HOM05D002267 ORTHO05D005902 5.3e-207 724.5 448 79.9
FvH4_5g30870 Fragaria vesca HOM05D002267 ORTHO05D005902 1.3e-205 719.9 444 79.7
Mapoly0028s0072 Marchantia polymorpha HOM05D002267 ORTHO05D005902 1.6e-203 713.0 488 71.5
Pp3c1_4540 Physcomitrium patens HOM05D002267 ORTHO05D005902 2.5e-196 689.1 488 68.4
GSVIVG01008609001 Vitis vinifera HOM05D002267 ORTHO05D005902 4.7e-195 684.9 441 76.6
SMO239G0110 Selaginella moellendorffii HOM05D002267 ORTHO05D005902 6.1e-195 684.5 486 70.8
Os12g0536000 Oryza sativa ssp. japonica HOM05D002267 ORTHO05D005902 1.0e-194 683.7 440 77.0
TPR.G3251 Trifolium pratense HOM05D002267 ORTHO05D005902 1.7e-189 666.4 382 84.6
unitig_748.g7015 Utricularia gibba HOM05D002267 ORTHO05D005902 3.8e-181 638.6 405 76.8
MBI14_g39140_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 3.7e-176 622.1 488 65.8
MBI14_g13654_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 2.0e-174 616.3 482 66.6
Nn4g23627 Nelumbo nucifera HOM05D002267 ORTHO05D005902 2.7e-174 615.9 495 65.1
CSS0025473 Camellia sinensis var. sinensis HOM05D002267 ORTHO05D005902 2.2e-173 612.8 384 78.1
CBR_g48938 Chara braunii HOM05D002267 ORTHO05D005902 5.0e-173 611.7 508 60.8
FAN05G0821 Fragaria x ananassa HOM05D002267 ORTHO05D005902 5.9e-166 588.2 384 76.0
RcHm_v2.0_Chr5g0053071 Rosa chinensis HOM05D002267 ORTHO05D005902 2.1e-163 579.7 387 74.2
Psat0s4662g0040 Pisum sativum HOM05D002267 ORTHO05D005902 6.1e-163 578.2 492 63.0
vmacro23424 Vaccinium macrocarpon HOM05D002267 ORTHO05D005902 5.8e-153 545.0 462 63.9
Prupe.3G243300 Prunus persica HOM05D002267 ORTHO05D005902 7.0e-151 538.1 349 76.8
Sabra17G0091700 Salix brachista HOM05D002267 ORTHO05D008106 2.3e-149 533.1 383 70.5
Cre12.g527400 Chlamydomonas reinhardtii HOM05D002267 ORTHO05D005902 1.3e-141 507.3 532 50.0
FAN18G0049 Fragaria x ananassa HOM05D002267 ORTHO05D005902 8.3e-136 488.0 269 86.6
BcaC03g17613 Brassica carinata HOM05D002267 ORTHO05D005902 4.6e-126 455.7 253 87.4
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 3.3e-124 449.5 459 52.1
HanXRQChr03g0070911 Helianthus annuus HOM05D002267 ORTHO05D005902 1.2e-118 431.0 241 85.9
Zm00001eb410550 Zea mays HOM05D002267 ORTHO05D005902 1.7e-112 410.6 238 80.7
AagrBONN_evm.TU.Sc2ySwM_228.1779 Anthoceros agrestis HOM05D002267 ORTHO05D005902 1.7e-104 384.0 238 76.5
HanXRQChr03g0070931 Helianthus annuus HOM05D002267 ORTHO05D005902 2.9e-104 383.3 301 65.4
FAN13G3322 Fragaria x ananassa HOM05D002267 ORTHO05D005902 1.6e-102 377.5 228 79.8
MBI14_g42567_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D005902 4.5e-97 359.4 492 44.5
MD09G1080600 Malus domestica HOM05D002267 ORTHO05D005902 5.8e-97 359.0 303 65.3
AagrBONN_evm.TU.Sc2ySwM_362.1960 Anthoceros agrestis HOM05D002267 ORTHO05D005902 4.2e-95 352.8 436 47.2
HPP92_013297 Vanilla planifolia HOM05D002267 ORTHO05D005902 2.3e-85 320.5 236 67.8
FAN02G0256 Fragaria x ananassa HOM05D002267 ORTHO05D005902 6.9e-82 308.9 315 55.9
SHI33593 Sapria himalayana HOM05D002267 ORTHO05D005902 2.6e-81 307.0 236 65.3
Duzib177G0042 Durio zibethinus HOM05D002267 ORTHO05D005902 1.0e-77 295.0 249 64.3
BcaC06g30839 Brassica carinata HOM05D002267 ORTHO05D005902 2.6e-65 253.8 298 52.3
CARHR060050 Cardamine hirsuta HOM05D002267 ORTHO05D005902 1.0e-61 241.9 146 82.9
TAR374G1196 Trochodendron aralioides HOM05D002267 ORTHO05D005902 4.7e-54 216.5 259 48.3
TPR.G11470 Trifolium pratense HOM05D002267 ORTHO05D005902 5.7e-52 209.5 159 66.0
Oeu025125.1 Olea europaea HOM05D002267 ORTHO05D005902 3.5e-49 200.3 153 66.0
BcaB07g30056 Brassica carinata HOM05D002267 ORTHO05D027489 3.8e-48 196.8 98 96.9
HanXRQChr17g0560661 Helianthus annuus HOM05D002267 ORTHO05D027489 1.0e-45 188.7 99 88.9
HPP92_013296 Vanilla planifolia HOM05D002267 ORTHO05D005902 1.3e-43 181.8 151 65.6
MBI14_g30826_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D027489 1.7e-40 171.4 101 80.2
MD09G1080700 Malus domestica HOM05D002267 ORTHO05D005902 4.7e-38 163.3 124 66.1
Sed0003994 Sechium edule HOM05D002267 ORTHO05D007330 3.9e-32 143.7 128 57.8
GSVIVG01036480001 Vitis vinifera HOM05D002267 ORTHO05D005902 2.8e-30 137.5 75 85.3
Duzib168G0178 Durio zibethinus HOM05D002267 ORTHO05D029252 8.9e-29 132.5 79 78.5
MBI14_g13653_MAGBIO Magnolia biondii HOM05D002267 ORTHO05D035901 1.9e-26 124.8 161 47.2
Glyma.20G047400 Glycine max HOM05D002267 ORTHO05D029252 4.1e-26 123.6 85 71.8
Glyma.04G110800 Glycine max HOM05D002267 ORTHO05D029252 3.5e-17 94.0 93 53.8
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 3.1e-13 80.9 61 68.9
Glyma.U031218 Glycine max HOM05D002267 ORTHO05D029252 2.4e-10 71.2 36 86.1
BcaB04g17555 Brassica carinata HOM05D002267 ORTHO05D092878 3.2e-10 70.9 51 68.6
FAN18G1196 Fragaria x ananassa HOM05D002267 ORTHO05D035901 3.2e-10 70.9 73 56.2
RcHm_v2.0_Chr5g0053081 Rosa chinensis HOM05D002267 ORTHO05D035901 1.1e-07 62.4 41 73.2
Nn5g27547 Nelumbo nucifera HOM05D002267 ORTHO05D027489 1.9e-07 61.6 30 83.3


User provided reference genes

Program Settings