Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G03360 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 4.4e-178 627.9 323 100.0
AT4G02950 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.4e-152 542.3 287 97.9
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 7.5e-85 318.2 288 64.9
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 5.0e-73 278.9 305 55.4
Carub.0006s3411 Capsella rubella HOM05D003286 ORTHO05D002463 3.9e-49 199.5 327 42.2
AL6G49560 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 3.6e-47 193.0 284 46.1
AT4G03350 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.3e-40 169.9 283 45.2
Carub.0006s3412 Capsella rubella HOM05D003286 ORTHO05D002463 3.3e-40 169.9 339 38.9
CARHR251330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.8e-39 166.8 312 40.1
AT4G02970 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 5.3e-38 162.5 256 46.1
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 3.2e-27 126.7 284 37.0
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 1.2e-26 124.8 277 35.7
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 7.9e-26 122.1 276 36.2
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 3.0e-25 120.2 280 35.0
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 3.9e-25 119.8 280 36.4
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 6.7e-25 119.0 282 36.2
AT4G05310 Arabidopsis thaliana HOM05D003286 ORTHO05D038712 8.7e-25 118.6 284 37.0
AL6G48890 Arabidopsis lyrata HOM05D003286 ORTHO05D038712 1.1e-24 118.2 281 35.6
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 1.1e-24 118.2 282 34.8
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 1.5e-24 117.9 279 34.8
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 1.5e-24 117.9 279 34.8
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 1.5e-24 117.9 279 34.8
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 1.5e-24 117.9 296 34.5
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 3.3e-24 116.7 279 34.8
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 7.4e-24 115.5 281 34.9
Carub.0006s3410 Capsella rubella HOM05D003286 ORTHO05D002463 1.3e-23 114.8 319 35.4
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 2.8e-23 113.6 278 34.5
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 2.8e-23 113.6 281 32.4
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 2.8e-23 113.6 292 33.9
Carub.0006s3408 Capsella rubella HOM05D003286 ORTHO05D002463 4.8e-23 112.8 274 34.3
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 4.8e-23 112.8 284 33.5
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 6.2e-23 112.5 277 33.2
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 8.2e-23 112.1 278 34.2
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 8.2e-23 112.1 276 34.1
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 8.2e-23 112.1 287 33.8
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 4.0e-22 109.8 283 33.2
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 5.3e-22 109.4 277 32.5
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 5.3e-22 109.4 288 32.6
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 6.9e-22 109.0 278 33.8
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 6.9e-22 109.0 276 31.5
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 6.9e-22 109.0 283 34.6
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 6.9e-22 109.0 286 33.2
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 9.0e-22 108.6 278 33.8
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 9.0e-22 108.6 278 33.8
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 9.0e-22 108.6 278 33.8
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 9.0e-22 108.6 282 35.5
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 9.0e-22 108.6 300 31.7
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 1.5e-21 107.8 278 34.2
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 2.6e-21 107.1 288 34.0
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 3.4e-21 106.7 282 31.9
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 3.4e-21 106.7 289 33.2
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 4.5e-21 106.3 277 33.2
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 3.8e-20 103.2 291 33.7
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 3.8e-20 103.2 283 34.3
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 3.8e-20 103.2 283 34.3
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 3.8e-20 103.2 281 32.7
Carub.0006s3318 Capsella rubella HOM05D003286 ORTHO05D002463 4.9e-20 102.8 373 30.6
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 4.9e-20 102.8 285 33.0
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 4.9e-20 102.8 284 33.8
Carub.0006s3322 Capsella rubella HOM05D003286 ORTHO05D114799 6.5e-20 102.4 317 31.9
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 6.5e-20 102.4 282 32.6
BolC9t53171H Brassica oleracea HOM05D003286 ORTHO05D020140 8.4e-20 102.1 302 33.1
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 8.4e-20 102.1 283 32.9
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 8.4e-20 102.1 282 29.4
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 1.1e-19 101.7 279 33.0
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 1.4e-19 101.3 283 30.7
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 1.4e-19 101.3 285 33.7
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 1.9e-19 100.9 365 27.9
Sp6g03000 Schrenkiella parvula HOM05D011698 ORTHO05D013798 2.5e-19 100.5 341 32.0
C09p02400 Brassica napus HOM05D003286 ORTHO05D020140 3.2e-19 100.1 302 32.8
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 3.2e-19 100.1 287 32.8
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 4.2e-19 99.8 388 28.4
CARHR251360 Cardamine hirsuta HOM05D003286 ORTHO05D002463 5.5e-19 99.4 316 33.9
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 5.5e-19 99.4 285 30.9
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 7.1e-19 99.0 276 30.8
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 7.1e-19 99.0 279 33.3
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.2e-18 98.2 282 34.0
AT4G05260 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.6e-18 97.8 278 31.7
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 1.6e-18 97.8 307 30.9
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 1.6e-18 97.8 284 32.7
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 2.1e-18 97.4 275 32.0
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 2.1e-18 97.4 286 30.8
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 6.0e-18 95.9 279 30.5
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 6.0e-18 95.9 276 33.0
VMungo0720G2787 Vigna mungo HOM05D003286 ORTHO05D002463 7.9e-18 95.5 301 30.2
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 1.0e-17 95.1 276 30.8
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 1.0e-17 95.1 276 30.8
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 1.0e-17 95.1 287 33.4
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 1.8e-17 94.4 274 30.7
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 3.0e-17 93.6 280 33.9
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 3.0e-17 93.6 286 32.9
CARHR251370 Cardamine hirsuta HOM05D003286 ORTHO05D002463 5.1e-17 92.8 183 38.8
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 5.1e-17 92.8 253 34.4
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 6.7e-17 92.4 278 30.9
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 6.7e-17 92.4 257 31.5
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 8.7e-17 92.0 264 31.4
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 8.7e-17 92.0 277 30.3
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 1.1e-16 91.7 282 30.5
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 1.5e-16 91.3 281 30.2
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 1.9e-16 90.9 273 30.4
BraA03t12250Z Brassica rapa HOM05D011698 ORTHO05D013798 5.7e-16 89.4 287 31.0
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 5.7e-16 89.4 279 31.2
BolC3t16033H Brassica oleracea HOM05D011698 ORTHO05D013798 9.7e-16 88.6 289 30.1
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 9.7e-16 88.6 276 27.2
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 9.7e-16 88.6 277 27.8
A09p02280 Brassica napus HOM05D003286 ORTHO05D021628 1.3e-15 88.2 136 43.4
BraA09t35877Z Brassica rapa HOM05D003286 ORTHO05D021628 1.3e-15 88.2 136 43.4
C09p02380 Brassica napus HOM05D003286 ORTHO05D021628 1.6e-15 87.8 136 43.4
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 2.2e-15 87.4 293 31.1
A03p30710 Brassica napus HOM05D011698 ORTHO05D013798 2.8e-15 87.0 300 30.3
CARHR252310 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.8e-15 87.0 272 29.4
Dinv20018 Davidia involucrata HOM05D000218 ORTHO05D000125 2.8e-15 87.0 248 32.7
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 3.7e-15 86.7 286 28.7
AL6G48870 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 4.8e-15 86.3 186 34.9
BolC9t53169H Brassica oleracea HOM05D003286 ORTHO05D021628 4.8e-15 86.3 136 42.6
C03p37410 Brassica napus HOM05D011698 ORTHO05D013798 6.3e-15 85.9 291 29.9
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 6.3e-15 85.9 276 27.5
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 1.8e-14 84.3 300 29.7
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 1.8e-14 84.3 280 29.6
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 2.4e-14 84.0 276 27.2
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 3.1e-14 83.6 397 25.4
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 6.9e-14 82.4 285 29.1
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 9.0e-14 82.0 284 27.5
CARHR252240 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.5e-13 81.3 93 51.6
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 2.0e-13 80.9 292 28.4
CARHR251340 Cardamine hirsuta HOM05D003286 ORTHO05D116431 2.6e-13 80.5 118 41.5
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 3.4e-13 80.1 312 29.2
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 3.4e-13 80.1 285 27.0
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 5.9e-13 79.3 275 26.9
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 7.7e-13 79.0 316 26.9
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 7.7e-13 79.0 303 29.0
AT4G05270 Arabidopsis thaliana HOM05D003286 ORTHO05D026808 1.0e-12 78.6 113 44.2
AL6G49330 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.7e-12 77.8 172 35.5
AL6G48880 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 2.2e-12 77.4 113 45.1
AL6G49340 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 2.2e-12 77.4 113 45.1
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 2.2e-12 77.4 276 29.0
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 2.9e-12 77.0 291 28.5
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 2.9e-12 77.0 271 29.9
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 3.8e-12 76.6 275 28.4
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 8.5e-12 75.5 286 27.3
AT4G05250 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.4e-11 74.7 123 39.8
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 1.4e-11 74.7 283 27.9
Carub.0006s3320 Capsella rubella HOM05D003286 ORTHO05D026808 7.2e-11 72.4 109 44.0
CARHR252280 Cardamine hirsuta HOM05D003286 ORTHO05D002463 7.2e-11 72.4 275 27.3
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 9.4e-11 72.0 269 29.7
Phvul.007G052400 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 1.6e-10 71.2 302 27.5
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 2.7e-10 70.5 306 28.1
BcaC01g06718 Brassica carinata HOM05D011698 ORTHO05D013798 2.7e-10 70.5 323 27.6
AT4G05240 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.6e-10 70.1 102 43.1
Carub.0006s3319 Capsella rubella HOM05D003286 ORTHO05D002463 3.6e-10 70.1 192 33.3
Sc07g0002810 Simmondsia chinensis HOM05D003286 ORTHO05D002463 3.6e-10 70.1 70 50.0
BolC2t09988H Brassica oleracea HOM05D003286 ORTHO05D002463 7.9e-10 68.9 105 42.9
Sp6g03010 Schrenkiella parvula HOM05D003286 ORTHO05D013798 1.0e-09 68.6 307 27.7
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 1.4e-09 68.2 279 28.0
A09p02290 Brassica napus HOM05D003286 ORTHO05D020140 1.8e-09 67.8 116 40.5
BraA09t35878Z Brassica rapa HOM05D003286 ORTHO05D020140 1.8e-09 67.8 116 40.5
Thhalv10029513m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 3.0e-09 67.0 413 25.9
C09p02390 Brassica napus HOM05D003286 ORTHO05D020140 5.1e-09 66.2 363 26.2
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 5.1e-09 66.2 83 45.8
CARHR252320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 6.7e-09 65.9 277 26.7
CSS0013854 Camellia sinensis var. sinensis HOM05D003286 ORTHO05D002463 1.9e-08 64.3 83 48.2
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 1.9e-08 64.3 72 50.0
BcaB01g02493 Brassica carinata HOM05D011698 ORTHO05D013798 2.5e-08 63.9 359 27.6
BolC9t53170H Brassica oleracea HOM05D003286 ORTHO05D020140 5.7e-08 62.8 363 25.9
CARHR252260 Cardamine hirsuta HOM05D003286 ORTHO05D002463 9.7e-08 62.0 72 40.3
Cfa000701 Carpinus fangiana HOM05D003286 ORTHO05D002463 2.8e-07 60.5 72 47.2
MD05G1341200 Malus domestica HOM05D003286 ORTHO05D002463 4.8e-07 59.7 107 34.6
Medtr8g019530 Medicago truncatula HOM05D003286 ORTHO05D002463 4.8e-07 59.7 60 48.3
unitig_748.g8449 Utricularia gibba HOM05D003286 ORTHO05D002463 4.8e-07 59.7 270 28.1
VMungo0720G2163 Vigna mungo HOM05D003286 ORTHO05D002463 4.8e-07 59.7 322 23.6
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 8.2e-07 58.9 94 41.5
A03p30700 Brassica napus HOM05D011698 ORTHO05D013798 1.8e-06 57.8 149 32.2
Lsat_1_v5_gn_8_111880 Lactuca sativa HOM05D003286 ORTHO05D002463 3.1e-06 57.0 314 26.4
TPR.G5521 Trifolium pratense HOM05D003286 ORTHO05D002463 3.1e-06 57.0 276 23.6
Nitab4.5_0002214g0070 Nicotiana tabacum HOM05D003286 ORTHO05D002463 4.1e-06 56.6 65 44.6
BcaB01g01995 Brassica carinata HOM05D011698 ORTHO05D021628 5.3e-06 56.2 93 43.0
CDE04G0028 Ceratophyllum demersum HOM05D003286 ORTHO05D002463 5.3e-06 56.2 84 38.1
VMungo0720G0763 Vigna mungo HOM05D035721 ORTHO05D050290 5.3e-06 56.2 106 32.1


User provided reference genes

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