Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G03350 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 4.6e-141 504.6 264 100.0
AT4G02970 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 9.4e-118 427.2 235 95.7
AL6G49560 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 3.2e-73 279.3 263 60.5
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 7.8e-56 221.5 268 51.9
Carub.0006s3411 Capsella rubella HOM05D003286 ORTHO05D002463 5.6e-46 188.7 324 42.6
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.8e-42 176.0 283 42.8
AT4G02950 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 7.1e-41 171.8 283 44.9
AT4G03360 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 2.7e-40 169.9 283 45.2
Carub.0006s3412 Capsella rubella HOM05D003286 ORTHO05D002463 6.0e-32 142.1 333 32.7
CARHR251330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 8.4e-26 121.7 312 32.1
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 3.5e-24 116.3 266 34.2
CARHR251360 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.3e-23 113.6 309 32.0
Carub.0006s3410 Capsella rubella HOM05D003286 ORTHO05D002463 3.3e-22 109.8 327 33.3
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 3.3e-22 109.8 265 33.2
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 1.3e-21 107.8 262 32.8
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 1.3e-21 107.8 262 32.8
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 1.3e-21 107.8 262 32.8
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 3.7e-21 106.3 264 32.2
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 4.8e-21 105.9 263 32.3
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 4.8e-21 105.9 266 32.7
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 1.4e-20 104.4 285 31.9
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 1.8e-20 104.0 264 31.8
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 1.8e-20 104.0 264 31.8
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 4.0e-20 102.8 261 31.8
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 5.3e-20 102.4 266 32.0
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 5.3e-20 102.4 266 32.0
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 5.3e-20 102.4 266 32.0
BolC9t53171H Brassica oleracea HOM05D003286 ORTHO05D020140 9.0e-20 101.7 270 34.8
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 9.0e-20 101.7 262 34.4
C09p02400 Brassica napus HOM05D003286 ORTHO05D020140 2.6e-19 100.1 270 34.8
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 4.5e-19 99.4 262 31.3
CARHR251340 Cardamine hirsuta HOM05D003286 ORTHO05D116431 5.8e-19 99.0 117 47.9
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 7.6e-19 98.6 270 30.4
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 7.6e-19 98.6 261 33.7
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 1.3e-18 97.8 282 30.1
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 1.3e-18 97.8 358 27.7
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 1.7e-18 97.4 271 28.4
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 2.2e-18 97.1 284 30.3
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 6.5e-18 95.5 284 29.6
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 6.5e-18 95.5 275 29.8
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 6.5e-18 95.5 268 30.2
CARHR251370 Cardamine hirsuta HOM05D003286 ORTHO05D002463 8.4e-18 95.1 210 39.5
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 8.4e-18 95.1 260 32.3
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 1.4e-17 94.4 270 30.4
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 1.4e-17 94.4 274 29.9
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 1.4e-17 94.4 278 29.1
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 1.4e-17 94.4 263 28.1
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 1.4e-17 94.4 265 32.5
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 1.9e-17 94.0 264 29.5
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 2.5e-17 93.6 260 31.5
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 5.5e-17 92.4 262 31.7
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 7.1e-17 92.0 259 29.7
Carub.0006s3408 Capsella rubella HOM05D003286 ORTHO05D002463 7.1e-17 92.0 273 31.1
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 7.1e-17 92.0 264 29.2
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 7.1e-17 92.0 269 32.3
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 9.3e-17 91.7 261 31.0
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 1.2e-16 91.3 261 31.0
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 1.2e-16 91.3 271 29.5
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 1.2e-16 91.3 273 31.5
AL6G48890 Arabidopsis lyrata HOM05D003286 ORTHO05D038712 1.6e-16 90.9 267 29.2
A03p30710 Brassica napus HOM05D011698 ORTHO05D013798 1.6e-16 90.9 293 30.7
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 1.6e-16 90.9 273 30.0
C03p37410 Brassica napus HOM05D011698 ORTHO05D013798 2.1e-16 90.5 279 30.8
BraA03t12250Z Brassica rapa HOM05D011698 ORTHO05D013798 2.1e-16 90.5 284 31.7
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 2.1e-16 90.5 269 29.7
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 2.1e-16 90.5 269 28.3
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 2.7e-16 90.1 279 30.1
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 2.7e-16 90.1 275 31.3
BolC3t16033H Brassica oleracea HOM05D011698 ORTHO05D013798 3.5e-16 89.7 278 29.9
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 4.6e-16 89.4 264 28.4
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 6.0e-16 89.0 271 29.2
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 6.0e-16 89.0 279 28.7
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 7.9e-16 88.6 260 31.9
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 7.9e-16 88.6 284 28.5
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 1.0e-15 88.2 281 27.0
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 1.0e-15 88.2 266 29.3
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 2.3e-15 87.0 273 30.0
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 3.9e-15 86.3 267 27.7
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 5.1e-15 85.9 259 31.3
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 5.1e-15 85.9 305 27.9
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 5.1e-15 85.9 276 27.5
Carub.0006s3322 Capsella rubella HOM05D003286 ORTHO05D114799 6.7e-15 85.5 303 25.7
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 8.7e-15 85.1 259 30.5
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 8.7e-15 85.1 275 29.8
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 1.1e-14 84.7 300 27.7
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 2.5e-14 83.6 271 27.3
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 3.3e-14 83.2 265 29.8
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 3.3e-14 83.2 265 29.8
Sp6g03000 Schrenkiella parvula HOM05D011698 ORTHO05D013798 3.3e-14 83.2 331 30.2
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 4.3e-14 82.8 261 30.3
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 9.6e-14 81.6 257 29.6
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 9.6e-14 81.6 290 25.9
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 1.3e-13 81.3 282 27.3
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 1.6e-13 80.9 261 28.0
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 1.6e-13 80.9 265 26.0
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 1.6e-13 80.9 264 29.9
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 2.8e-13 80.1 248 31.9
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 2.8e-13 80.1 264 27.3
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 2.8e-13 80.1 275 28.7
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 3.7e-13 79.7 260 30.0
A09p02280 Brassica napus HOM05D003286 ORTHO05D021628 4.8e-13 79.3 139 38.1
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 4.8e-13 79.3 252 27.4
BraA09t35877Z Brassica rapa HOM05D003286 ORTHO05D021628 4.8e-13 79.3 139 38.1
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 6.3e-13 79.0 261 28.4
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 8.2e-13 78.6 270 27.0
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 1.4e-12 77.8 277 26.7
C09p02380 Brassica napus HOM05D003286 ORTHO05D021628 2.4e-12 77.0 139 38.1
Sp6g03010 Schrenkiella parvula HOM05D003286 ORTHO05D013798 2.4e-12 77.0 291 28.2
BcaC01g06718 Brassica carinata HOM05D011698 ORTHO05D013798 3.1e-12 76.6 318 26.1
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 4.1e-12 76.3 259 28.6
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 4.1e-12 76.3 267 27.3
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 5.3e-12 75.9 390 25.4
BolC9t53169H Brassica oleracea HOM05D003286 ORTHO05D021628 6.9e-12 75.5 139 37.4
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 9.0e-12 75.1 274 25.5
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 1.2e-11 74.7 281 26.3
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 1.5e-11 74.3 238 30.7
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 2.0e-11 73.9 271 26.6
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 3.4e-11 73.2 260 29.2
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 4.5e-11 72.8 289 26.6
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 5.9e-11 72.4 288 26.0
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 5.9e-11 72.4 270 31.1
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 5.9e-11 72.4 259 29.7
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 7.6e-11 72.0 112 41.1
CARHR252280 Cardamine hirsuta HOM05D003286 ORTHO05D002463 7.6e-11 72.0 260 27.3
AT4G05310 Arabidopsis thaliana HOM05D003286 ORTHO05D038712 1.0e-10 71.6 274 28.5
AT4G05260 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.3e-10 71.2 267 30.7
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 1.7e-10 70.9 260 26.5
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 1.7e-10 70.9 259 26.3
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 2.9e-10 70.1 310 23.5
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 2.9e-10 70.1 280 25.0
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 3.8e-10 69.7 280 28.6
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 8.5e-10 68.6 262 25.6
Ca_10980_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 1.4e-09 67.8 262 27.9
Ca_11000_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 1.4e-09 67.8 262 27.9
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 1.9e-09 67.4 260 26.5
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 2.5e-09 67.0 281 24.9
Cfa000701 Carpinus fangiana HOM05D003286 ORTHO05D002463 4.2e-09 66.2 65 47.7
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 4.2e-09 66.2 277 28.5
Dinv20018 Davidia involucrata HOM05D000218 ORTHO05D000125 5.5e-09 65.9 235 30.6
A09p02290 Brassica napus HOM05D003286 ORTHO05D020140 7.2e-09 65.5 116 39.7
BraA09t35878Z Brassica rapa HOM05D003286 ORTHO05D020140 7.2e-09 65.5 116 39.7
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 7.2e-09 65.5 65 47.7
CSS0013854 Camellia sinensis var. sinensis HOM05D003286 ORTHO05D002463 9.3e-09 65.1 65 47.7
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 9.3e-09 65.1 259 25.5
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 1.2e-08 64.7 65 46.2
AL6G48870 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.6e-08 64.3 90 44.4
BraA03t12249Z Brassica rapa HOM05D011698 ORTHO05D013798 2.1e-08 63.9 139 34.5
Carub.0006s3320 Capsella rubella HOM05D003286 ORTHO05D026808 2.1e-08 63.9 84 46.4
CARHR252320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.1e-08 63.9 264 25.8
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 2.7e-08 63.5 287 26.5
BcaB01g02493 Brassica carinata HOM05D011698 ORTHO05D013798 2.7e-08 63.5 350 26.6
C09p02390 Brassica napus HOM05D003286 ORTHO05D020140 2.7e-08 63.5 100 40.0
BolC9t53170H Brassica oleracea HOM05D003286 ORTHO05D020140 4.6e-08 62.8 100 39.0
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 6.1e-08 62.4 278 25.9
A03p30700 Brassica napus HOM05D011698 ORTHO05D013798 7.9e-08 62.0 139 33.8
unitig_748.g8449 Utricularia gibba HOM05D003286 ORTHO05D002463 1.8e-07 60.8 254 28.7
BcaC01g06716 Brassica carinata HOM05D011698 ORTHO05D013798 2.3e-07 60.5 108 37.0
C03p37400 Brassica napus HOM05D011698 ORTHO05D013798 2.3e-07 60.5 108 37.0
BolC3t16032H Brassica oleracea HOM05D011698 ORTHO05D013798 2.3e-07 60.5 108 37.0
Carub.0006s3318 Capsella rubella HOM05D003286 ORTHO05D002463 1.9e-06 57.4 147 33.3
AL6G48880 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 2.5e-06 57.0 90 42.2
AL6G49340 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 2.5e-06 57.0 90 42.2
Thhalv10029513m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 3.3e-06 56.6 144 31.2
MD05G1341200 Malus domestica HOM05D003286 ORTHO05D002463 3.3e-06 56.6 125 29.6
Ca_10982_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 5.7e-06 55.8 266 28.6
Ca_11002_v3 Cicer arietinum L. HOM05D003286 ORTHO05D002463 5.7e-06 55.8 266 28.6
CARHR252240 Cardamine hirsuta HOM05D003286 ORTHO05D002463 7.4e-06 55.5 119 31.9
AT4G05240 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 9.7e-06 55.1 94 40.4


User provided reference genes

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