Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 0.0e+00 1373.6 686 100.0
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1325.5 686 95.9
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1320.1 686 95.5
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1291.6 686 93.3
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1288.9 686 93.7
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1276.2 686 92.7
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1275.0 686 91.8
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1272.3 687 91.8
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1271.9 686 91.7
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1270.4 686 91.5
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1268.8 686 91.5
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1265.0 687 91.4
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1176.4 650 90.2
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 1.9e-311 1072.0 685 75.8
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 4.2e-311 1070.8 685 75.9
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 1.0e-309 1066.2 684 74.9
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 3.0e-309 1064.7 684 74.9
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 3.9e-309 1064.3 685 74.6
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 5.1e-309 1063.9 685 74.6
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 9.7e-308 1059.7 685 74.9
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 1.6e-307 1058.9 684 74.6
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 1.6e-307 1058.9 683 75.8
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 2.2e-307 1058.5 685 74.7
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 1.4e-306 1055.8 684 73.5
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 5.3e-306 1053.9 664 75.8
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 5.3e-306 1053.9 685 74.6
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 9.0e-306 1053.1 685 74.3
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 1.2e-305 1052.7 685 73.7
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 1.5e-305 1052.4 683 75.0
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 1.5e-305 1052.4 685 74.6
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 2.6e-305 1051.6 684 74.7
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 7.7e-305 1050.0 685 73.4
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 1.0e-304 1049.7 685 74.3
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 1.3e-304 1049.3 685 73.6
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 1.3e-304 1049.3 685 74.3
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 8.5e-304 1046.6 685 72.8
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 1.4e-303 1045.8 685 73.3
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 1.4e-303 1045.8 684 74.0
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 2.5e-303 1045.0 685 73.1
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 3.2e-303 1044.6 685 73.3
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 7.2e-303 1043.5 696 73.4
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 1.6e-302 1042.3 685 73.1
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 7.9e-302 1040.0 685 72.8
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 1.4e-301 1039.3 685 74.2
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 1.8e-301 1038.9 686 72.9
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 2.3e-301 1038.5 686 72.7
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 3.0e-301 1038.1 686 72.7
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 3.9e-301 1037.7 700 72.4
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 6.7e-301 1036.9 695 73.4
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 6.7e-301 1036.9 684 73.0
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 1.1e-300 1036.2 685 72.3
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 1.5e-300 1035.8 688 72.7
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 1.5e-300 1035.8 686 72.3
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 2.0e-300 1035.4 686 72.0
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 7.4e-300 1033.5 686 72.2
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 1.3e-299 1032.7 685 73.7
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 1.3e-299 1032.7 686 72.0
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 1.3e-299 1032.7 686 71.9
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 2.2e-299 1031.9 686 72.9
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 6.3e-299 1030.4 684 73.1
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 8.2e-299 1030.0 687 71.8
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 1.1e-298 1029.6 684 72.2
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 3.1e-298 1028.1 685 71.4
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 2.6e-297 1025.0 685 72.1
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 4.5e-297 1024.2 685 71.8
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 7.7e-297 1023.5 683 71.7
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 2.9e-296 1021.5 686 72.3
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 5.0e-296 1020.8 685 72.6
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 1.4e-295 1019.2 686 72.2
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 1.9e-295 1018.8 684 71.8
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 2.5e-295 1018.5 684 71.5
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 1.6e-294 1015.8 705 71.5
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 3.9e-293 1011.1 684 70.8
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 5.1e-293 1010.7 696 70.1
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 2.0e-292 1008.8 703 71.1
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 5.7e-292 1007.3 685 71.1
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 1.3e-291 1006.1 700 69.3
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 1.4e-290 1002.7 683 70.3
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 4.5e-289 997.7 683 70.9
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 1.9e-287 992.3 713 67.6
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 1.2e-286 989.6 686 71.0
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 1.4e-285 986.1 685 70.4
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 1.1e-282 976.5 697 69.4
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 3.1e-282 974.9 716 68.2
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 5.9e-281 970.7 661 70.2
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 3.4e-276 954.9 684 67.7
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 1.1e-274 949.9 739 63.7
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 7.0e-274 947.2 625 73.9
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 8.8e-269 930.2 685 67.3
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 1.3e-264 916.4 729 63.1
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.8e-261 906.0 746 62.1
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 3.5e-257 891.7 688 65.4
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 2.1e-254 882.5 607 70.2
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 4.6e-249 864.8 635 65.5
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 9.5e-247 857.1 684 59.4
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 4.1e-242 841.6 685 58.8
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 3.8e-235 818.5 623 62.9
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 8.4e-235 817.4 684 56.7
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 1.1e-226 790.4 685 59.9
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 2.3e-216 756.1 677 53.6
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 3.4e-204 715.7 523 65.4
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 5.6e-138 495.7 595 48.1
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 1.8e-136 490.7 728 39.6
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 3.9e-115 419.9 298 65.1
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 2.1e-92 344.4 264 63.6
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 4.2e-85 320.1 222 68.5
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 8.7e-83 312.4 289 58.5
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 5.1e-75 286.6 226 61.9
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 4.5e-71 273.5 257 55.6
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 1.5e-58 231.9 150 72.7
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 7.7e-47 193.0 122 73.8
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 4.1e-40 170.6 123 66.7
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 3.5e-39 167.5 138 59.4
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 1.0e-27 129.4 94 63.8
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 4.1e-24 117.5 157 42.0
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 3.0e-22 111.3 107 47.7
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 1.2e-18 99.4 114 52.6
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 1.1e-16 92.8 62 71.0
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 7.0e-16 90.1 56 78.6
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 2.3e-11 75.1 43 72.1
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 9.9e-10 69.7 41 80.5
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 4.9e-09 67.4 94 47.9
BraA03t12236Z Brassica rapa HOM05D000161 ORTHO05D042129 3.9e-06 57.8 38 78.9


User provided reference genes

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