Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G02950 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.4e-171 606.3 319 100.0
AT4G03360 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 7.0e-152 540.8 287 97.9
AL6G49970 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 6.3e-84 315.1 288 64.2
AT4G03370 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.6e-71 272.7 305 54.1
Carub.0006s3411 Capsella rubella HOM05D003286 ORTHO05D002463 1.9e-48 197.2 327 41.6
AL6G49560 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.0e-46 191.4 281 47.3
AT4G03350 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.9e-40 170.6 283 44.9
CARHR251330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.2e-39 167.9 314 39.5
Carub.0006s3412 Capsella rubella HOM05D003286 ORTHO05D002463 1.6e-39 167.5 339 38.3
AT4G02970 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 3.0e-38 163.3 256 45.7
Thhalv10028963m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 2.7e-26 123.6 279 35.1
AL6G49960 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 7.8e-26 122.1 284 36.6
AL6G48830 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 3.0e-25 120.2 278 35.6
CARHR251320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.1e-24 118.2 282 34.4
Carub.0006s3317 Capsella rubella HOM05D003286 ORTHO05D002463 1.5e-24 117.9 282 35.1
Thecc.06G214200 Theobroma cacao HOM05D003286 ORTHO05D002463 1.5e-24 117.9 284 35.6
AT4G05310 Arabidopsis thaliana HOM05D003286 ORTHO05D038712 4.3e-24 116.3 281 36.7
BcaC04g21387 Brassica carinata HOM05D003286 ORTHO05D002463 4.3e-24 116.3 281 34.2
C09p32410 Brassica napus HOM05D003286 ORTHO05D002463 4.3e-24 116.3 281 34.2
BolC9t56086H Brassica oleracea HOM05D003286 ORTHO05D002463 4.3e-24 116.3 281 34.2
Carub.0006s3410 Capsella rubella HOM05D003286 ORTHO05D002463 7.3e-24 115.5 319 35.1
A09p25500 Brassica napus HOM05D003286 ORTHO05D002463 1.2e-23 114.8 281 34.2
BraA09t38125Z Brassica rapa HOM05D003286 ORTHO05D002463 1.2e-23 114.8 281 34.2
TPR.G34503 Trifolium pratense HOM05D003286 ORTHO05D002463 1.2e-23 114.8 284 33.8
Manes.17G035200 Manihot esculenta HOM05D003286 ORTHO05D002463 1.6e-23 114.4 284 33.5
AL6G48890 Arabidopsis lyrata HOM05D003286 ORTHO05D038712 2.8e-23 113.6 276 35.1
Duzib235G0679 Durio zibethinus HOM05D003286 ORTHO05D002463 4.7e-23 112.8 284 32.7
Ciclev10018056m.g Citrus clementina HOM05D003286 ORTHO05D002463 6.2e-23 112.5 284 35.2
Manes.17G035100 Manihot esculenta HOM05D003286 ORTHO05D002463 8.1e-23 112.1 283 31.8
AT4G05230 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.1e-22 111.7 279 32.6
BcaB01g01895 Brassica carinata HOM05D003286 ORTHO05D002463 1.1e-22 111.7 280 33.9
BraA08t33672Z Brassica rapa HOM05D003286 ORTHO05D002463 3.1e-22 110.2 280 33.6
CiPaw.09G087100 Carya illinoinensis HOM05D003286 ORTHO05D002463 3.1e-22 110.2 278 33.5
QL93p0073_0716 Quercus lobata HOM05D003286 ORTHO05D002463 4.0e-22 109.8 294 33.3
Glyma.U031417 Glycine max HOM05D003286 ORTHO05D002463 6.8e-22 109.0 289 32.9
Potri.004G022400 Populus trichocarpa HOM05D003286 ORTHO05D002463 6.8e-22 109.0 285 34.7
Carub.0006s3413 Capsella rubella HOM05D003286 ORTHO05D002463 1.5e-21 107.8 285 32.6
Duzib160G0656 Durio zibethinus HOM05D003286 ORTHO05D002463 1.5e-21 107.8 279 32.6
A08p17100 Brassica napus HOM05D003286 ORTHO05D002463 2.6e-21 107.1 280 33.2
BolC9t53171H Brassica oleracea HOM05D003286 ORTHO05D020140 2.6e-21 107.1 302 33.8
Carub.0006s3408 Capsella rubella HOM05D003286 ORTHO05D002463 2.6e-21 107.1 308 32.1
Glyma.13G153900 Glycine max HOM05D003286 ORTHO05D002463 2.6e-21 107.1 285 31.9
Lalb_Chr10g0101691 Lupinus albus HOM05D003286 ORTHO05D002463 2.6e-21 107.1 300 32.0
BcaC01g00928 Brassica carinata HOM05D003286 ORTHO05D002463 3.4e-21 106.7 280 33.2
C03p86020 Brassica napus HOM05D003286 ORTHO05D002463 3.4e-21 106.7 280 33.2
BolC3t20894H Brassica oleracea HOM05D003286 ORTHO05D002463 3.4e-21 106.7 280 33.2
Cpa.g.sc198.10 Carica papaya HOM05D003286 ORTHO05D002463 3.4e-21 106.7 278 30.9
Eucgr.E03707 Eucalyptus grandis HOM05D003286 ORTHO05D002463 3.4e-21 106.7 284 34.5
Sp6g02990 Schrenkiella parvula HOM05D003286 ORTHO05D002463 5.8e-21 105.9 280 33.6
Gohir.D10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 7.5e-21 105.5 291 32.6
Gorai.011G016700 Gossypium raimondii HOM05D003286 ORTHO05D002463 7.5e-21 105.5 290 33.4
RcHm_v2.0_Chr5g0003951 Rosa chinensis HOM05D003286 ORTHO05D002463 7.5e-21 105.5 288 32.6
C09p02400 Brassica napus HOM05D003286 ORTHO05D020140 9.8e-21 105.1 302 33.4
FAN15G1751 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.3e-20 104.8 288 33.7
CARHR252330 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.7e-20 104.4 279 32.6
FvH4_2g19820 Fragaria vesca HOM05D003286 ORTHO05D002463 1.7e-20 104.4 292 34.2
FAN24G2961 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.7e-20 104.4 286 35.0
Sp6g03000 Schrenkiella parvula HOM05D011698 ORTHO05D013798 1.7e-20 104.4 341 32.0
Carub.0006s3318 Capsella rubella HOM05D003286 ORTHO05D002463 2.9e-20 103.6 375 30.1
Manes.16G012200 Manihot esculenta HOM05D003286 ORTHO05D002463 4.9e-20 102.8 283 32.2
Phvul.002G250900 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 6.4e-20 102.4 291 31.6
AL6G48840 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 1.1e-19 101.7 390 28.2
Carub.0006s3322 Capsella rubella HOM05D003286 ORTHO05D114799 1.1e-19 101.7 310 31.9
Cc07_g12950 Coffea canephora HOM05D003286 ORTHO05D002463 1.1e-19 101.7 293 33.1
AT4G05260 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 1.4e-19 101.3 280 31.8
Thecc.10G122300 Theobroma cacao HOM05D003286 ORTHO05D002463 2.4e-19 100.5 367 27.5
Psat5g122680 Pisum sativum HOM05D003286 ORTHO05D002463 3.2e-19 100.1 279 29.4
THA.LOC104806256 Tarenaya hassleriana HOM05D003286 ORTHO05D002463 3.2e-19 100.1 278 33.1
Gohir.A10G015100 Gossypium hirsutum HOM05D003286 ORTHO05D002463 5.4e-19 99.4 281 32.0
Sabra04G0012200 Salix brachista HOM05D003286 ORTHO05D002463 5.4e-19 99.4 286 33.2
VMungo0251G0596 Vigna mungo HOM05D003286 ORTHO05D002463 5.4e-19 99.4 284 30.3
CARHR251360 Cardamine hirsuta HOM05D003286 ORTHO05D002463 7.1e-19 99.0 314 34.1
Gohir.A10G211300 Gossypium hirsutum HOM05D003286 ORTHO05D002463 9.2e-19 98.6 291 32.6
Peaxi162Scf00063g00244 Petunia axillaris HOM05D003286 ORTHO05D002463 9.2e-19 98.6 284 28.9
Lj2g0008596 Lotus japonicus HOM05D003286 ORTHO05D002463 1.2e-18 98.2 278 30.6
Medtr3g080180 Medicago truncatula HOM05D003286 ORTHO05D002463 1.2e-18 98.2 285 31.6
Sed0004843 Sechium edule HOM05D003286 ORTHO05D002463 2.7e-18 97.1 281 32.7
C02p39730 Brassica napus HOM05D003286 ORTHO05D002463 3.5e-18 96.7 275 31.6
Lj1g0012071 Lotus japonicus HOM05D003286 ORTHO05D002463 3.5e-18 96.7 287 30.0
Eucgr.F00162 Eucalyptus grandis HOM05D003286 ORTHO05D002463 4.6e-18 96.3 284 33.1
Aa31sc199G10 Aethionema arabicum HOM05D003286 ORTHO05D002463 6.0e-18 95.9 279 30.5
DCAR_030615 Daucus carota HOM05D003286 ORTHO05D002463 7.8e-18 95.5 284 31.0
CARHR251370 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.3e-17 94.7 183 38.8
Eucgr.D00812 Eucalyptus grandis HOM05D003286 ORTHO05D002463 1.7e-17 94.4 278 31.3
Prupe.4G026000 Prunus persica HOM05D003286 ORTHO05D002463 2.3e-17 94.0 296 31.4
A09p02270 Brassica napus HOM05D003286 ORTHO05D002463 3.0e-17 93.6 278 30.6
BraA09t35876Z Brassica rapa HOM05D003286 ORTHO05D002463 3.0e-17 93.6 278 30.6
Thhalv10029386m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 3.9e-17 93.2 253 34.0
MD10G1314800 Malus domestica HOM05D003286 ORTHO05D002463 3.9e-17 93.2 289 32.9
VMungo0720G2787 Vigna mungo HOM05D003286 ORTHO05D002463 3.9e-17 93.2 302 29.8
FAN27G1731 Fragaria x ananassa HOM05D003286 ORTHO05D002463 1.1e-16 91.7 259 31.7
BraA03t12250Z Brassica rapa HOM05D011698 ORTHO05D013798 1.5e-16 91.3 285 31.6
A09p02280 Brassica napus HOM05D003286 ORTHO05D021628 1.9e-16 90.9 136 43.4
C09p02370 Brassica napus HOM05D003286 ORTHO05D002463 1.9e-16 90.9 280 31.1
BraA09t35877Z Brassica rapa HOM05D003286 ORTHO05D021628 1.9e-16 90.9 136 43.4
SHI02168 Sapria himalayana HOM05D003286 ORTHO05D002463 1.9e-16 90.9 276 30.1
BolC3t16033H Brassica oleracea HOM05D011698 ORTHO05D013798 2.5e-16 90.5 287 30.7
Hma1.2p1_0158F.1_g069790 Hydrangea macrophylla HOM05D003286 ORTHO05D002463 2.5e-16 90.5 286 31.5
C09p02380 Brassica napus HOM05D003286 ORTHO05D021628 3.3e-16 90.1 136 44.9
BolC9t53168H Brassica oleracea HOM05D003286 ORTHO05D002463 3.3e-16 90.1 273 30.8
Lj1P1225T26 Lonicera japonica HOM05D003286 ORTHO05D002463 3.3e-16 90.1 283 30.0
QL05p075142 Quercus lobata HOM05D003286 ORTHO05D002463 3.3e-16 90.1 285 30.5
PGR042G2119 Punica granatum HOM05D003286 ORTHO05D002463 5.6e-16 89.4 279 29.7
A03p30710 Brassica napus HOM05D011698 ORTHO05D013798 7.3e-16 89.0 298 30.9
Cfa000276 Carpinus fangiana HOM05D003286 ORTHO05D002463 7.3e-16 89.0 279 31.9
Actinidia01598 Actinidia chinensis HOM05D003286 ORTHO05D002463 9.5e-16 88.6 285 32.6
BolC9t53169H Brassica oleracea HOM05D003286 ORTHO05D021628 9.5e-16 88.6 136 44.1
Psat6g165560 Pisum sativum HOM05D003286 ORTHO05D002463 1.6e-15 87.8 279 27.6
C03p37410 Brassica napus HOM05D011698 ORTHO05D013798 2.8e-15 87.0 282 30.9
FvH4_3g02641 Fragaria vesca HOM05D000218 ORTHO05D000125 4.7e-15 86.3 266 30.5
AL6G48870 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 6.2e-15 85.9 188 34.6
ClCG01G022170 Citrullus lanatus HOM05D003286 ORTHO05D002463 6.2e-15 85.9 278 27.3
Solyc11g011900.1 Solanum lycopersicum HOM05D003286 ORTHO05D002463 6.2e-15 85.9 295 30.5
CARHR252310 Cardamine hirsuta HOM05D003286 ORTHO05D002463 8.1e-15 85.5 274 28.8
Thhalv10029305m.g Eutrema salsugineum HOM05D003286 ORTHO05D021628 8.1e-15 85.5 397 25.4
PSO541G2565 Papaver somniferum HOM05D003286 ORTHO05D002463 8.1e-15 85.5 302 30.1
Dinv20018 Davidia involucrata HOM05D000218 ORTHO05D000125 2.3e-14 84.0 250 32.0
MBI02_g21870_MAGBIO Magnolia biondii HOM05D003286 ORTHO05D002463 3.1e-14 83.6 282 29.8
CsaV3_6G049250 Cucumis sativus L. HOM05D003286 ORTHO05D002463 6.8e-14 82.4 283 27.6
MELO3C007371.2 Cucumis melo HOM05D003286 ORTHO05D002463 8.9e-14 82.0 278 26.6
PGR004G2484 Punica granatum HOM05D003286 ORTHO05D002463 8.9e-14 82.0 278 28.8
CARHR251340 Cardamine hirsuta HOM05D003286 ORTHO05D116431 1.5e-13 81.3 128 43.0
CARHR252240 Cardamine hirsuta HOM05D003286 ORTHO05D002463 3.4e-13 80.1 95 50.5
HPP92_012327 Vanilla planifolia HOM05D003286 ORTHO05D002463 3.4e-13 80.1 278 27.3
Nn1g03635 Nelumbo nucifera HOM05D003286 ORTHO05D002463 4.4e-13 79.7 289 28.0
ECA238G0902 Erigeron canadensis HOM05D003286 ORTHO05D002463 5.8e-13 79.3 271 29.9
Oeu009440.1 Olea europaea HOM05D003286 ORTHO05D002463 5.8e-13 79.3 279 26.2
AL6G49330 Arabidopsis lyrata HOM05D003286 ORTHO05D002463 7.6e-13 79.0 172 35.5
PSO675G8889 Papaver somniferum HOM05D003286 ORTHO05D002463 9.9e-13 78.6 305 28.5
Nn1g08164 Nelumbo nucifera HOM05D003286 ORTHO05D002463 1.3e-12 78.2 318 26.7
TWI38G0444 Tripterygium wilfordii HOM05D003286 ORTHO05D002463 1.3e-12 78.2 287 26.8
HPP92_012386 Vanilla planifolia HOM05D003286 ORTHO05D002463 1.3e-12 78.2 279 28.3
CANSAT56G4121 Cannabis sativa HOM05D003286 ORTHO05D002463 1.7e-12 77.8 313 28.8
Aqoxy1G02958 Aquilegia oxysepala HOM05D003286 ORTHO05D002463 2.9e-12 77.0 277 27.1
CAN.G222.170 Capsicum annuum HOM05D003286 ORTHO05D002463 4.9e-12 76.3 293 28.3
GSVIVG01012631001 Vitis vinifera HOM05D003286 ORTHO05D002463 6.4e-12 75.9 278 29.1
AT4G05270 Arabidopsis thaliana HOM05D003286 ORTHO05D026808 8.4e-12 75.5 112 43.8
CARHR252280 Cardamine hirsuta HOM05D003286 ORTHO05D002463 1.4e-11 74.7 277 27.4
HanXRQChr08g0234141 Helianthus annuus HOM05D003286 ORTHO05D002463 1.9e-11 74.3 286 30.4
AL6G48880 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 2.4e-11 73.9 112 44.6
AL6G49340 Arabidopsis lyrata HOM05D003286 ORTHO05D026808 2.4e-11 73.9 112 44.6
AT4G05250 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 4.1e-11 73.2 125 39.2
Rhsim10G0183400 Rhododendron simsii HOM05D003286 ORTHO05D002463 4.1e-11 73.2 285 27.4
Carub.0006s3319 Capsella rubella HOM05D003286 ORTHO05D002463 5.4e-11 72.8 195 33.3
A09p02290 Brassica napus HOM05D003286 ORTHO05D020140 2.1e-10 70.9 113 41.6
BraA09t35878Z Brassica rapa HOM05D003286 ORTHO05D020140 2.1e-10 70.9 113 41.6
unitig_32.g10728 Utricularia gibba HOM05D003286 ORTHO05D002463 2.1e-10 70.9 271 29.2
BcaC01g06718 Brassica carinata HOM05D011698 ORTHO05D013798 3.5e-10 70.1 314 27.4
C09p02390 Brassica napus HOM05D003286 ORTHO05D020140 3.5e-10 70.1 361 26.9
AT4G05240 Arabidopsis thaliana HOM05D003286 ORTHO05D002463 6.0e-10 69.3 102 43.1
Carub.0006s3320 Capsella rubella HOM05D003286 ORTHO05D026808 6.0e-10 69.3 106 44.3
Thhalv10029513m.g Eutrema salsugineum HOM05D003286 ORTHO05D002463 6.0e-10 69.3 413 25.9
Sc07g0002810 Simmondsia chinensis HOM05D003286 ORTHO05D002463 7.8e-10 68.9 72 48.6
Phvul.007G052400 Phaseolus vulgaris HOM05D003286 ORTHO05D002463 1.0e-09 68.6 303 27.1
Sp6g03010 Schrenkiella parvula HOM05D003286 ORTHO05D013798 1.0e-09 68.6 307 28.0
BolC2t09988H Brassica oleracea HOM05D003286 ORTHO05D002463 1.7e-09 67.8 105 42.9
CARHR252320 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.3e-09 67.4 278 26.6
Migut.K01114 Erythranthe guttata HOM05D003286 ORTHO05D002463 3.0e-09 67.0 281 27.4
BolC9t53170H Brassica oleracea HOM05D003286 ORTHO05D020140 3.9e-09 66.6 361 25.8
EL10Ac4g07788 Beta vulgaris HOM05D003286 ORTHO05D002463 6.6e-09 65.9 299 25.8
BcaB01g02493 Brassica carinata HOM05D011698 ORTHO05D013798 1.5e-08 64.7 356 27.5
COL.COLO4_31727 Corchorus olitorius HOM05D003286 ORTHO05D002463 1.5e-08 64.7 72 50.0
CSS0013854 Camellia sinensis var. sinensis HOM05D003286 ORTHO05D002463 2.5e-08 63.9 83 47.0
CARHR252260 Cardamine hirsuta HOM05D003286 ORTHO05D002463 2.1e-07 60.8 74 39.2
Cfa000701 Carpinus fangiana HOM05D003286 ORTHO05D002463 2.1e-07 60.8 72 47.2
A03p30700 Brassica napus HOM05D011698 ORTHO05D013798 8.1e-07 58.9 146 32.9
Medtr8g019530 Medicago truncatula HOM05D003286 ORTHO05D002463 8.1e-07 58.9 60 48.3
MD05G1341200 Malus domestica HOM05D003286 ORTHO05D002463 1.1e-06 58.5 109 33.9
unitig_748.g8449 Utricularia gibba HOM05D003286 ORTHO05D002463 1.1e-06 58.5 270 27.8
Ca_16278_v3 Cicer arietinum L. HOM05D000120 ORTHO05D002463 1.4e-06 58.2 234 26.9
BraA03t12249Z Brassica rapa HOM05D011698 ORTHO05D013798 1.8e-06 57.8 144 32.6
VMungo0720G2163 Vigna mungo HOM05D003286 ORTHO05D002463 2.4e-06 57.4 322 23.3
TPR.G5521 Trifolium pratense HOM05D003286 ORTHO05D002463 5.2e-06 56.2 278 23.4
GSVIVG01029957001 Vitis vinifera HOM05D003286 ORTHO05D002463 5.2e-06 56.2 126 34.1
BcaB01g01995 Brassica carinata HOM05D011698 ORTHO05D021628 8.9e-06 55.5 93 43.0
Nitab4.5_0002214g0070 Nicotiana tabacum HOM05D003286 ORTHO05D002463 8.9e-06 55.5 74 39.2


User provided reference genes

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