Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 2.9e-92 342.4 176 100.0
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 6.9e-62 241.5 155 82.6
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 3.2e-51 206.1 158 72.8
CARHR249320 Cardamine hirsuta HOM05D003601 ORTHO05D015895 3.9e-41 172.6 153 62.7
A02p24300 Brassica napus HOM05D003601 ORTHO05D015895 5.9e-37 158.7 156 58.3
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 5.9e-37 158.7 156 58.3
BraA02t07420Z Brassica rapa HOM05D003601 ORTHO05D015895 5.9e-37 158.7 156 58.3
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.0e-36 157.9 180 52.2
BcaC03g16072 Brassica carinata HOM05D003601 ORTHO05D015895 1.4e-33 147.5 161 54.0
BolC2t09850H Brassica oleracea HOM05D003601 ORTHO05D015895 1.4e-33 147.5 161 54.0
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 2.1e-26 123.6 99 56.6
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 1.0e-25 121.3 102 55.9
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 3.3e-24 116.3 73 64.4
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 4.4e-24 115.9 170 44.1
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 9.7e-24 114.8 73 63.0
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 3.7e-23 112.8 71 63.4
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 3.7e-23 112.8 71 66.2
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 3.7e-23 112.8 71 64.8
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 4.8e-23 112.5 79 59.5
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 6.3e-23 112.1 74 60.8
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 8.2e-23 111.7 72 63.9
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 8.2e-23 111.7 72 63.9
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.1e-22 111.3 96 56.2
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.1e-22 111.3 67 65.7
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 1.4e-22 110.9 75 58.7
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.4e-22 110.9 98 55.1
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 1.4e-22 110.9 68 66.2
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.4e-22 110.9 69 63.8
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 2.4e-22 110.2 69 63.8
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 2.4e-22 110.2 73 58.9
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 3.1e-22 109.8 101 51.5
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 3.1e-22 109.8 72 62.5
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.1e-22 109.8 99 53.5
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 4.1e-22 109.4 71 63.4
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 4.1e-22 109.4 71 63.4
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 4.1e-22 109.4 71 63.4
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 4.1e-22 109.4 97 51.5
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 5.3e-22 109.0 69 66.7
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 5.3e-22 109.0 67 65.7
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 5.3e-22 109.0 97 51.5
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 7.0e-22 108.6 101 50.5
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 7.0e-22 108.6 101 50.5
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 7.0e-22 108.6 91 51.6
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 9.1e-22 108.2 96 52.1
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.2e-21 107.8 69 63.8
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.2e-21 107.8 69 63.8
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.2e-21 107.8 72 62.5
A01p41390 Brassica napus HOM05D003601 ORTHO05D023606 1.5e-21 107.5 73 63.0
BNapus_Darmor_BZH_scaffold_78p00320 Brassica napus HOM05D003601 ORTHO05D023606 1.5e-21 107.5 73 63.0
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.5e-21 107.5 69 59.4
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 1.5e-21 107.5 97 51.5
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 3.4e-21 106.3 114 44.7
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 3.4e-21 106.3 105 49.5
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 4.5e-21 105.9 67 65.7
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 4.5e-21 105.9 66 63.6
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 5.9e-21 105.5 68 61.8
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 5.9e-21 105.5 72 59.7
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 5.9e-21 105.5 93 53.8
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 5.9e-21 105.5 93 53.8
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 5.9e-21 105.5 93 53.8
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 5.9e-21 105.5 93 53.8
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 7.7e-21 105.1 65 64.6
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 7.7e-21 105.1 97 53.6
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 1.3e-20 104.4 71 57.7
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 1.3e-20 104.4 114 43.9
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.3e-20 104.4 66 63.6
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.7e-20 104.0 94 48.9
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.7e-20 104.0 93 51.6
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.7e-20 104.0 68 63.2
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 2.2e-20 103.6 95 51.6
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.9e-20 103.2 94 54.3
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.9e-20 103.2 67 61.2
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 3.8e-20 102.8 95 49.5
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 3.8e-20 102.8 66 60.6
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.8e-20 102.8 65 61.5
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.8e-20 102.8 65 61.5
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 5.0e-20 102.4 68 57.4
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 5.0e-20 102.4 61 65.6
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 5.0e-20 102.4 99 49.5
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 5.0e-20 102.4 67 61.2
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 5.0e-20 102.4 65 61.5
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 5.0e-20 102.4 98 51.0
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 6.5e-20 102.1 64 65.6
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 6.5e-20 102.1 66 60.6
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 8.5e-20 101.7 99 48.5
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 8.5e-20 101.7 65 63.1
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 8.5e-20 101.7 97 52.6
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.1e-19 101.3 64 62.5
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.1e-19 101.3 102 49.0
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 1.1e-19 101.3 61 63.9
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.1e-19 101.3 68 55.9
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.4e-19 100.9 63 63.5
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.4e-19 100.9 63 63.5
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 1.4e-19 100.9 64 60.9
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.9e-19 100.5 97 49.5
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 1.9e-19 100.5 65 61.5
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 2.5e-19 100.1 127 41.7
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.5e-19 100.1 69 58.0
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 4.2e-19 99.4 67 58.2
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 4.2e-19 99.4 64 60.9
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 5.5e-19 99.0 72 59.7
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 5.5e-19 99.0 99 47.5
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 5.5e-19 99.0 117 42.7
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 7.2e-19 98.6 116 44.8
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 7.2e-19 98.6 62 61.3
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 7.2e-19 98.6 117 44.4
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 7.2e-19 98.6 85 52.9
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 7.2e-19 98.6 94 48.9
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 9.4e-19 98.2 70 55.7
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 9.4e-19 98.2 97 46.4
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 9.4e-19 98.2 97 46.4
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.2e-18 97.8 114 43.0
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.6e-18 97.4 92 46.7
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.6e-18 97.4 92 46.7
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 1.6e-18 97.4 61 63.9
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 2.1e-18 97.1 96 45.8
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 2.7e-18 96.7 110 44.5
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.4e-17 94.4 105 45.7
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 1.8e-17 94.0 103 44.7
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 6.7e-17 92.0 75 53.3
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 8.8e-17 91.7 98 46.9
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 1.1e-16 91.3 68 55.9
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 4.4e-16 89.4 142 35.2
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 4.4e-16 89.4 73 56.2
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 7.4e-16 88.6 95 44.2
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 1.7e-15 87.4 88 50.0
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 3.1e-14 83.2 79 45.6
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 4.1e-14 82.8 74 50.0
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 5.3e-14 82.4 82 43.9
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 1.2e-13 81.3 115 40.9
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 2.0e-13 80.5 44 70.5
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 3.5e-13 79.7 86 44.2
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 3.5e-13 79.7 53 62.3
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 4.5e-13 79.3 79 49.4
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 7.7e-13 78.6 46 65.2
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 2.2e-12 77.0 42 69.0
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.5e-11 74.3 67 49.3
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.9e-11 73.9 75 44.0
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 1.9e-11 73.9 92 40.2
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 2.3e-09 67.0 64 51.6
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 2.3e-09 67.0 64 51.6
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 8.8e-09 65.1 62 51.6
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 1.2e-08 64.7 62 50.0
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 1.5e-08 64.3 81 44.4
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 2.6e-08 63.5 62 50.0
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 2.2e-07 60.5 108 37.0
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 3.7e-07 59.7 32 71.9
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 3.7e-07 59.7 32 71.9
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 8.2e-07 58.5 32 68.8
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 7.0e-06 55.5 32 65.6
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 7.0e-06 55.5 32 65.6


User provided reference genes

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