Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G66652 Arabidopsis thaliana HOM05D003528 ORTHO05D015900 0.0e+00 1947.6 998 100.0
AL3G17720 Arabidopsis lyrata HOM05D003528 ORTHO05D015900 0.0e+00 1577.0 1017 81.6
Carub.0003s0612 Capsella rubella HOM05D003528 ORTHO05D015900 0.0e+00 1330.9 1028 71.5
CARHR081190 Cardamine hirsuta HOM05D003528 ORTHO05D015900 0.0e+00 1140.6 1049 63.7
Sp3g05600 Schrenkiella parvula HOM05D003528 ORTHO05D015900 0.0e+00 1105.5 1039 61.7
Thhalv10019983m.g Eutrema salsugineum HOM05D003528 ORTHO05D015900 3.5e-290 1001.9 1043 58.2
A03p34760 Brassica napus HOM05D003528 ORTHO05D015900 1.9e-256 889.8 1037 54.6
C03p42300 Brassica napus HOM05D003528 ORTHO05D015900 2.8e-247 859.4 1058 53.0
BolC3t16504H Brassica oleracea HOM05D003528 ORTHO05D015900 1.8e-246 856.7 1044 53.0
BraA03t12657Z Brassica rapa HOM05D003528 ORTHO05D015900 2.4e-246 856.3 1042 53.3
THA.LOC104827097 Tarenaya hassleriana HOM05D003528 ORTHO05D015900 3.7e-122 443.7 1120 35.5
Cpa.g.sc9.60 Carica papaya HOM05D007976 ORTHO05D002678 7.6e-19 100.5 1293 23.4
GSVIVG01034996001 Vitis vinifera HOM05D007976 ORTHO05D002678 2.4e-17 95.5 365 26.8
CAN.G484.60 Capsicum annuum HOM05D007976 ORTHO05D002678 2.1e-16 92.4 130 38.5
COL.COLO4_34619 Corchorus olitorius HOM05D007976 ORTHO05D002678 2.3e-15 89.0 533 25.7
FAN12G1581 Fragaria x ananassa HOM05D007976 ORTHO05D002678 5.6e-14 84.3 164 35.4
MD16G1154500 Malus domestica HOM05D007976 ORTHO05D002678 5.6e-14 84.3 729 25.7
ATR0739G197 Amborella trichopoda HOM05D003779 ORTHO05D002678 2.1e-13 82.4 190 30.0
Gohir.D07G030200 Gossypium hirsutum HOM05D003779 ORTHO05D002678 3.6e-13 81.6 161 31.1
MBI15_g10629_MAGBIO Magnolia biondii HOM05D003779 ORTHO05D002678 3.6e-13 81.6 189 27.5
Gohir.A13G184900 Gossypium hirsutum HOM05D003779 ORTHO05D002678 8.1e-13 80.5 160 31.2
Gorai.013G217400 Gossypium raimondii HOM05D003779 ORTHO05D002678 8.1e-13 80.5 160 31.2
Thecc.09G033700 Theobroma cacao HOM05D003779 ORTHO05D002678 8.1e-13 80.5 161 31.1
GSVIVG01023597001 Vitis vinifera HOM05D003779 ORTHO05D002678 1.1e-12 80.1 162 30.2
Aqoxy7G03464 Aquilegia oxysepala HOM05D003779 ORTHO05D002678 1.4e-12 79.7 164 29.9
CiPaw.15G174200 Carya illinoinensis HOM05D003779 ORTHO05D002678 1.4e-12 79.7 49 67.3
Phvul.006G117800 Phaseolus vulgaris HOM05D007976 ORTHO05D002678 1.4e-12 79.7 295 27.5
Prupe.7G260100 Prunus persica HOM05D003779 ORTHO05D002678 1.4e-12 79.7 49 67.3
Dinv42884 Davidia involucrata HOM05D003779 ORTHO05D002678 1.8e-12 79.3 82 48.8
Dinv43216 Davidia involucrata HOM05D003779 ORTHO05D002678 1.8e-12 79.3 82 48.8
PSO017G3118 Papaver somniferum HOM05D003779 ORTHO05D002678 1.8e-12 79.3 51 60.8
Atru.chr7.134 Acer truncatum HOM05D003779 ORTHO05D002678 3.1e-12 78.6 162 30.9
CiPaw.16G114900 Carya illinoinensis HOM05D003779 ORTHO05D002678 3.1e-12 78.6 49 65.3
Gohir.A07G026300 Gossypium hirsutum HOM05D003779 ORTHO05D002678 3.1e-12 78.6 161 30.4
Manes.06G037900 Manihot esculenta HOM05D003779 ORTHO05D002678 3.1e-12 78.6 159 30.2
TWI34G0110 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 3.1e-12 78.6 49 65.3
TWI63G1714 Tripterygium wilfordii HOM05D003779 ORTHO05D002678 3.1e-12 78.6 49 65.3
TAR636G1028 Trochodendron aralioides HOM05D003779 ORTHO05D002678 3.1e-12 78.6 51 60.8
Duzib187G1590 Durio zibethinus HOM05D003779 ORTHO05D002678 4.0e-12 78.2 49 67.3
Gohir.D13G191400 Gossypium hirsutum HOM05D003779 ORTHO05D002678 4.0e-12 78.2 160 30.6
Sc08g0004970 Simmondsia chinensis HOM05D003779 ORTHO05D002678 4.0e-12 78.2 162 29.0
THA.LOC104813541 Tarenaya hassleriana HOM05D003779 ORTHO05D002678 4.0e-12 78.2 49 65.3
Haze_19235 Corylus avellana HOM05D003779 ORTHO05D002678 5.3e-12 77.8 49 65.3
MD02G1009900 Malus domestica HOM05D003779 ORTHO05D002678 5.3e-12 77.8 108 38.9
PSO170G5719 Papaver somniferum HOM05D003779 ORTHO05D002678 5.3e-12 77.8 51 60.8
Nitab4.5_0008534g0010 Nicotiana tabacum HOM05D003779 ORTHO05D002678 6.9e-12 77.4 77 48.1
CSS0005827 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 9.0e-12 77.0 49 65.3
FAN26G3236 Fragaria x ananassa HOM05D003779 ORTHO05D002678 9.0e-12 77.0 49 61.2
Peaxi162Scf00347g00821 Petunia axillaris HOM05D003779 ORTHO05D002678 9.0e-12 77.0 77 48.1
Phvul.009G194000 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 9.0e-12 77.0 94 40.4
VMungo1215G0704 Vigna mungo HOM05D003779 ORTHO05D002678 9.0e-12 77.0 94 39.4
RcHm_v2.0_Chr2g0085981 Rosa chinensis HOM05D003779 ORTHO05D002678 1.2e-11 76.6 49 63.3
SHI00143 Sapria himalayana HOM05D003779 ORTHO05D002678 1.2e-11 76.6 171 33.9
Lj3A831T87 Lonicera japonica HOM05D007976 ORTHO05D002678 1.5e-11 76.3 68 47.1
VMungo1309G0106 Vigna mungo HOM05D003779 ORTHO05D002678 1.5e-11 76.3 94 40.4
Ca_14533_v3 Cicer arietinum L. HOM05D003779 ORTHO05D002678 2.0e-11 75.9 106 38.7
Duzib168G2294 Durio zibethinus HOM05D003779 ORTHO05D002678 2.0e-11 75.9 153 30.7
RcHm_v2.0_Chr4g0425101 Rosa chinensis HOM05D007976 ORTHO05D002678 2.0e-11 75.9 337 24.9
HanXRQChr05g0146071 Helianthus annuus HOM05D007976 ORTHO05D002678 2.6e-11 75.5 277 27.8
Phvul.003G157600 Phaseolus vulgaris HOM05D003779 ORTHO05D002678 2.6e-11 75.5 161 28.6
PGR102G2779 Punica granatum HOM05D003779 ORTHO05D002678 2.6e-11 75.5 49 61.2
Rhsim01G0036200 Rhododendron simsii HOM05D003779 ORTHO05D002678 2.6e-11 75.5 49 63.3
Rhsim01G0045400 Rhododendron simsii HOM05D003779 ORTHO05D002678 2.6e-11 75.5 49 63.3
THA.LOC104817824 Tarenaya hassleriana HOM05D003779 ORTHO05D002678 2.6e-11 75.5 49 63.3
TAR625G1002 Trochodendron aralioides HOM05D003779 ORTHO05D002678 2.6e-11 75.5 51 56.9
CAN.G1116.7 Capsicum annuum HOM05D003779 ORTHO05D002678 3.4e-11 75.1 77 46.8
Glyma.15G205600 Glycine max HOM05D003779 ORTHO05D002678 3.4e-11 75.1 94 40.4
Nn8g39802 Nelumbo nucifera HOM05D003779 ORTHO05D002678 3.4e-11 75.1 49 61.2
Oeu026546.1 Olea europaea HOM05D003779 ORTHO05D002678 4.5e-11 74.7 93 38.7
QL02p092676 Quercus lobata HOM05D003779 ORTHO05D002678 4.5e-11 74.7 49 61.2
SGA_v2.0_scaffold387G50508 Striga asiatica HOM05D003779 ORTHO05D002678 4.5e-11 74.7 49 63.3
unitig_0.g2698 Utricularia gibba HOM05D003779 ORTHO05D002678 4.5e-11 74.7 49 63.3
Cfa020847 Carpinus fangiana HOM05D003779 ORTHO05D002678 5.8e-11 74.3 49 63.3
AUR62039282 Chenopodium quinoa HOM05D007976 ORTHO05D002678 5.8e-11 74.3 162 29.6
Ca_21441_v3 Cicer arietinum L. HOM05D007976 ORTHO05D002678 5.8e-11 74.3 492 24.8
HPP92_016075 Vanilla planifolia HOM05D003779 ORTHO05D002678 5.8e-11 74.3 133 33.1
FAN23G1864 Fragaria x ananassa HOM05D003779 ORTHO05D002678 7.6e-11 73.9 49 59.2
Nitab4.5_0001201g0070 Nicotiana tabacum HOM05D003779 ORTHO05D002678 7.6e-11 73.9 77 46.8
SalBow1G6151 Salvia bowleyana HOM05D003779 ORTHO05D002678 7.6e-11 73.9 49 61.2
TWI09G1545 Tripterygium wilfordii HOM05D007976 ORTHO05D002678 7.6e-11 73.9 1285 22.5
arahy.Tifrunner.gnm1.ann1.MXR4WM Arachis hypogaea HOM05D003779 ORTHO05D002678 9.9e-11 73.6 49 61.2
arahy.Tifrunner.gnm1.ann1.Y7PKX5 Arachis hypogaea HOM05D003779 ORTHO05D002678 9.9e-11 73.6 49 61.2
CSS0008137 Camellia sinensis var. sinensis HOM05D003779 ORTHO05D002678 9.9e-11 73.6 49 59.2
AUR62039744 Chenopodium quinoa HOM05D003779 ORTHO05D002678 9.9e-11 73.6 49 61.2
Lalb_Chr08g0233951 Lupinus albus HOM05D003779 ORTHO05D002678 9.9e-11 73.6 49 61.2
Lalb_Chr08g0234021 Lupinus albus HOM05D003779 ORTHO05D002678 9.9e-11 73.6 49 61.2
Mapoly0032s0123 Marchantia polymorpha HOM05D003779 ORTHO05D002678 9.9e-11 73.6 57 56.1
Sabra06G0143300 Salix brachista HOM05D003779 ORTHO05D002678 9.9e-11 73.6 42 69.0
SalBow1G3877 Salvia bowleyana HOM05D003779 ORTHO05D002678 9.9e-11 73.6 53 54.7
Thecc.04G300200 Theobroma cacao HOM05D007976 ORTHO05D002678 9.9e-11 73.6 1319 22.5
ECA246G2174 Erigeron canadensis HOM05D007976 ORTHO05D002678 1.3e-10 73.2 289 27.0
Glyma.09G097600 Glycine max HOM05D003779 ORTHO05D002678 1.3e-10 73.2 49 61.2
Psat1g022120 Pisum sativum HOM05D003779 ORTHO05D002678 1.3e-10 73.2 49 59.2
Sabra06G0142300 Salix brachista HOM05D003779 ORTHO05D002678 1.3e-10 73.2 42 69.0
Sopen07g001470 Solanum pennellii HOM05D003779 ORTHO05D002678 1.3e-10 73.2 93 38.7
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 1.3e-10 73.2 49 63.3
TPR.G35880 Trifolium pratense HOM05D003779 ORTHO05D002678 1.3e-10 73.2 49 59.2
Gorai.009G054800 Gossypium raimondii HOM05D003779 ORTHO05D002678 1.7e-10 72.8 153 30.7
Lj6g0022686 Lotus japonicus HOM05D003779 ORTHO05D002678 1.7e-10 72.8 94 38.3
Nitab4.5_0013613g0030 Nicotiana tabacum HOM05D007976 ORTHO05D002678 1.7e-10 72.8 986 23.2
Hund11973 Selenicereus undatus HOM05D007976 ORTHO05D002678 1.7e-10 72.8 50 54.0
Solyc07g005320.3 Solanum lycopersicum HOM05D003779 ORTHO05D002678 1.7e-10 72.8 49 61.2
AUR62016206 Chenopodium quinoa HOM05D007976 ORTHO05D002678 2.2e-10 72.4 162 29.6
SGA_v2.0_scaffold206G41814 Striga asiatica HOM05D003779 ORTHO05D002678 2.2e-10 72.4 77 45.5
Actinidia23546 Actinidia chinensis HOM05D003779 ORTHO05D002678 2.9e-10 72.0 49 61.2
CANSAT11G0231 Cannabis sativa HOM05D003779 ORTHO05D002678 2.9e-10 72.0 93 38.7
Sed0010991 Sechium edule HOM05D003779 ORTHO05D002678 2.9e-10 72.0 161 28.6
HanXRQChr12g0357201 Helianthus annuus HOM05D003779 ORTHO05D002678 3.8e-10 71.6 49 59.2
Lj9C714G7 Lonicera japonica HOM05D003779 ORTHO05D002678 3.8e-10 71.6 49 57.1
Lalb_Chr13g0300951 Lupinus albus HOM05D003779 ORTHO05D002678 3.8e-10 71.6 101 38.6
Sed0025790 Sechium edule HOM05D003779 ORTHO05D002678 3.8e-10 71.6 49 59.2
Dinv17810 Davidia involucrata HOM05D003779 ORTHO05D002678 4.9e-10 71.2 52 53.8
Gohir.A05G051500 Gossypium hirsutum HOM05D003779 ORTHO05D002678 4.9e-10 71.2 49 59.2
Pp3c7_2840 Physcomitrium patens HOM05D003779 ORTHO05D002678 4.9e-10 71.2 51 52.9
HPP92_020551 Vanilla planifolia HOM05D003779 ORTHO05D002678 4.9e-10 71.2 47 57.4
CDE05G1362 Ceratophyllum demersum HOM05D003779 ORTHO05D002678 6.4e-10 70.9 49 55.1
DCAR_019379 Daucus carota HOM05D003779 ORTHO05D002678 6.4e-10 70.9 102 37.3
DCAR_020882 Daucus carota HOM05D003779 ORTHO05D002678 6.4e-10 70.9 50 56.0
Medtr4g122070 Medicago truncatula HOM05D007976 ORTHO05D002678 6.4e-10 70.9 998 23.4
Potri.018G110100 Populus trichocarpa HOM05D003779 ORTHO05D002678 6.4e-10 70.9 49 59.2
Sabra18G0093100 Salix brachista HOM05D003779 ORTHO05D002678 6.4e-10 70.9 42 66.7
vmacro06092 Vaccinium macrocarpon HOM05D003779 ORTHO05D002678 6.4e-10 70.9 93 38.7
MD13G1154900 Malus domestica HOM05D007976 ORTHO05D002678 8.4e-10 70.5 693 21.9
SMO115G0353 Selaginella moellendorffii HOM05D003779 ORTHO05D002678 8.4e-10 70.5 57 49.1
Zm00001eb014820 Zea mays HOM05D003779 ORTHO05D002678 8.4e-10 70.5 306 27.5
TPR.G829 Trifolium pratense HOM05D007976 ORTHO05D002678 1.1e-09 70.1 50 58.0
Dinv41398 Davidia involucrata HOM05D003779 ORTHO05D002678 1.4e-09 69.7 49 61.2
HanXRQChr10g0314671 Helianthus annuus HOM05D003779 ORTHO05D002678 1.4e-09 69.7 49 57.1
Lj6A690G74 Lonicera japonica HOM05D007976 ORTHO05D002678 1.4e-09 69.7 56 50.0
Pp3c11_22610 Physcomitrium patens HOM05D003779 ORTHO05D002678 1.4e-09 69.7 51 52.9
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 2.4e-09 68.9 1115 22.9
SHI02625 Sapria himalayana HOM05D003779 ORTHO05D002678 2.4e-09 68.9 44 63.6
Duzib212G0249 Durio zibethinus HOM05D007976 ORTHO05D002678 4.2e-09 68.2 1291 23.2
Rhsim03G0256100 Rhododendron simsii HOM05D003779 ORTHO05D002678 4.2e-09 68.2 43 62.8
Potri.010G145150 Populus trichocarpa HOM05D007976 ORTHO05D002678 5.4e-09 67.8 1236 23.2
vmacro08047 Vaccinium macrocarpon HOM05D007976 ORTHO05D002678 7.1e-09 67.4 151 31.1
SGA_v2.0_scaffold21G09645 Striga asiatica HOM05D003779 ORTHO05D002678 9.3e-09 67.0 84 39.3
Nitab4.5_0002150g0130 Nicotiana tabacum HOM05D007976 ORTHO05D002678 1.2e-08 66.6 1029 22.7
Zm00001eb215820 Zea mays HOM05D003779 ORTHO05D002678 1.6e-08 66.2 50 54.0
Zm00001eb055800 Zea mays HOM05D003779 ORTHO05D002678 2.7e-08 65.5 50 54.0
AagrBONN_evm.TU.Sc2ySwM_344.140 Anthoceros agrestis HOM05D003779 ORTHO05D002678 3.5e-08 65.1 90 36.7
Cfa015318 Carpinus fangiana HOM05D007976 ORTHO05D002678 3.5e-08 65.1 1290 23.5
QL06p012216 Quercus lobata HOM05D007976 ORTHO05D002678 1.0e-07 63.5 1131 22.6
Solyc12g099280.2 Solanum lycopersicum HOM05D007976 ORTHO05D002678 1.0e-07 63.5 1034 21.4
Gohir.A10G172100 Gossypium hirsutum HOM05D007976 ORTHO05D002678 1.3e-07 63.2 572 23.1
PSO357G0305 Papaver somniferum HOM05D007976 ORTHO05D002678 1.8e-07 62.8 852 24.1
Prupe.1G117900 Prunus persica HOM05D007976 ORTHO05D002678 1.8e-07 62.8 731 22.7
DCAR_015453 Daucus carota HOM05D003779 ORTHO05D002678 2.3e-07 62.4 46 54.3
MBI18_g32027_MAGBIO Magnolia biondii HOM05D007976 ORTHO05D002678 2.3e-07 62.4 558 23.7
Aqoxy5G03581 Aquilegia oxysepala HOM05D007976 ORTHO05D002678 3.9e-07 61.6 685 23.2
Dinv15173 Davidia involucrata HOM05D007976 ORTHO05D002678 5.1e-07 61.2 1329 22.3
CDE02G3961 Ceratophyllum demersum HOM05D003779 ORTHO05D002678 6.7e-07 60.8 274 26.6
MCO13G324 Micromonas commoda HOM05D003779 ORTHO05D002678 8.7e-07 60.5 76 36.8
Psat6g117320 Pisum sativum HOM05D007976 ORTHO05D002678 8.7e-07 60.5 90 38.9
Sopen12g033960 Solanum pennellii HOM05D007976 ORTHO05D002678 1.5e-06 59.7 1032 21.6
Psat5g106280 Pisum sativum HOM05D000515 ORTHO05D002678 3.3e-06 58.5 91 38.5
CBR_g45968 Chara braunii HOM05D003779 ORTHO05D002678 5.6e-06 57.8 52 44.2
PSO170G4144 Papaver somniferum HOM05D007976 ORTHO05D002678 7.4e-06 57.4 1053 23.1
Peaxi162Scf00120g00024 Petunia axillaris HOM05D007976 ORTHO05D002678 7.4e-06 57.4 1183 21.8
Nn4g25570 Nelumbo nucifera HOM05D007976 ORTHO05D002678 9.6e-06 57.0 1377 22.3
PRCOL_00006854 Prasinoderma coloniale HOM05D003779 ORTHO05D002678 9.6e-06 57.0 61 39.3


User provided reference genes

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