Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 1.6e-274 948.7 468 100.0
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 1.0e-239 833.2 437 95.7
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 8.0e-237 823.5 437 94.3
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 6.7e-236 820.5 437 93.8
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 4.8e-234 814.3 438 92.5
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 2.5e-230 802.0 437 91.3
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 8.8e-228 793.5 437 91.1
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 9.8e-219 763.5 445 87.9
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 9.8e-219 763.5 445 87.9
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.7e-218 762.7 437 87.2
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 6.6e-215 750.7 467 83.7
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 5.7e-211 737.6 437 84.9
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 9.2e-209 730.3 445 84.9
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 3.1e-196 688.7 392 89.5
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 5.2e-196 688.0 392 89.5
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 8.9e-196 687.2 437 78.3
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 9.2e-193 677.2 437 78.7
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 6.0e-192 674.5 437 78.7
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 7.8e-192 674.1 429 78.3
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.1e-190 670.2 431 78.4
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.2e-189 666.8 437 77.1
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 3.6e-189 665.2 429 76.0
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 8.1e-189 664.1 438 77.2
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 4.0e-188 661.8 446 76.0
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 9.9e-187 657.1 446 75.6
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 2.9e-186 655.6 437 76.7
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 8.3e-186 654.1 438 74.4
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 1.4e-185 653.3 438 74.2
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 4.1e-185 651.7 437 74.1
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.2e-184 650.2 446 74.7
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.2e-184 650.2 441 74.8
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 2.1e-184 649.4 431 75.9
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 4.6e-184 648.3 430 75.6
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 6.0e-184 647.9 437 73.5
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 2.3e-183 646.0 430 74.9
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.1e-183 644.8 433 74.4
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 5.1e-183 644.8 443 73.1
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.6e-183 644.4 430 74.7
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.6e-183 644.0 430 74.7
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 8.6e-183 644.0 437 73.2
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-182 643.7 430 74.7
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.1e-182 643.7 437 73.2
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 2.5e-182 642.5 438 74.7
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 4.3e-182 641.7 437 73.5
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 1.8e-180 636.3 469 69.9
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 2.4e-180 636.0 430 74.0
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 6.8e-180 634.4 442 73.5
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 1.5e-179 633.3 435 72.9
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 9.9e-179 630.6 438 74.2
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 4.9e-178 628.2 438 73.5
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 3.5e-176 622.1 440 73.2
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 4.6e-176 621.7 439 72.9
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 1.0e-175 620.5 433 72.7
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 3.0e-175 619.0 443 72.9
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 8.7e-175 617.5 430 71.4
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.5e-174 616.7 441 72.1
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.9e-174 616.3 437 71.9
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 4.3e-174 615.1 441 71.9
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 4.3e-174 615.1 440 71.4
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 9.6e-174 614.0 431 71.7
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 9.6e-174 614.0 442 71.5
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.6e-173 613.2 416 74.3
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.2e-173 611.3 437 70.7
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 2.4e-172 609.4 443 70.7
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 2.4e-172 609.4 446 70.9
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 3.1e-172 609.0 455 69.9
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 9.0e-172 607.4 440 72.3
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 3.4e-171 605.5 440 71.4
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 4.4e-171 605.1 440 70.5
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 1.3e-170 603.6 388 79.9
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 8.4e-170 600.9 438 69.9
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.9e-169 599.7 440 70.2
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 2.4e-169 599.4 443 69.3
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.4e-169 599.4 440 70.0
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 4.2e-169 598.6 385 79.2
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 7.1e-169 597.8 440 70.5
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 1.2e-168 597.0 428 71.7
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 7.8e-168 594.3 428 71.3
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 8.7e-167 590.9 440 69.3
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.1e-165 586.3 430 69.8
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 2.1e-165 586.3 445 67.9
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 2.8e-165 585.9 454 68.1
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 6.2e-165 584.7 438 69.2
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 3.1e-164 582.4 445 66.5
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 2.6e-163 579.3 359 86.4
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 2.6e-163 579.3 429 69.7
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 3.4e-163 578.9 437 69.6
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 5.8e-163 578.2 509 61.7
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 5.4e-161 571.6 467 66.0
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 9.3e-161 570.9 438 67.8
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 1.2e-160 570.5 450 66.4
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 6.0e-160 568.2 446 66.4
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.5e-158 563.5 387 75.2
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 9.6e-158 560.8 470 63.2
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.1e-156 557.4 379 72.6
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 7.9e-152 541.2 443 64.6
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.3e-151 539.7 453 62.9
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 5.7e-150 535.0 452 61.3
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 3.5e-144 515.8 371 73.3
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 1.3e-141 507.3 371 72.2
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 8.2e-141 504.6 368 71.2
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 2.9e-138 496.1 457 58.6
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 2.9e-138 496.1 448 59.2
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 9.4e-137 491.1 392 65.8
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.6e-136 489.2 432 57.9
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.8e-135 486.9 431 57.8
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.3e-135 486.5 365 77.0
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 3.0e-135 486.1 430 57.9
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 5.7e-134 481.9 354 71.8
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 2.2e-133 479.9 443 56.7
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 3.7e-133 479.2 461 54.0
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.4e-132 477.2 392 66.1
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 6.5e-130 468.4 438 55.5
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 1.6e-128 463.8 427 55.3
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 1.1e-126 457.6 338 73.7
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 1.3e-125 454.1 404 62.6
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.1e-121 441.0 454 51.1
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.4e-119 434.1 412 59.0
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 1.3e-114 417.5 441 50.3
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 2.1e-112 410.2 461 49.0
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 2.1e-112 410.2 262 78.6
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 2.0e-110 403.7 433 51.5
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 4.7e-104 382.5 448 46.4
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.0e-103 379.4 320 63.4
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.8e-100 370.5 430 52.3
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 7.7e-99 365.2 215 81.9
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 9.8e-86 321.6 350 48.6
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.2e-83 314.7 205 86.8
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.5e-81 305.1 319 56.4
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.2e-79 299.3 297 56.2
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.0e-58 230.3 172 66.9
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 4.0e-55 219.9 190 64.7
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 4.4e-54 216.5 349 37.2
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 4.3e-49 199.9 270 41.5
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.1e-41 175.3 138 60.9
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 7.4e-41 172.6 291 38.5
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.2e-37 161.0 84 83.3
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.5e-33 148.3 200 47.0
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 6.5e-29 132.9 67 86.6
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 2.1e-27 127.9 67 83.6
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.7e-27 127.5 117 61.5
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 6.7e-26 122.9 67 80.6
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 3.3e-17 94.0 321 25.5
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 3.7e-16 90.5 61 73.8
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 3.1e-15 87.4 47 78.7
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.6e-14 84.3 50 70.0
CARHR263810 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.4e-12 78.6 113 48.7
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.5e-12 77.8 50 68.0
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 1.6e-11 75.1 60 63.3
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.0e-10 70.9 91 48.4
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 2.6e-09 67.8 38 76.3
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.3e-09 67.4 45 60.0
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 4.4e-09 67.0 213 32.4
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 3.7e-08 63.9 34 79.4
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 5.3e-07 60.1 35 71.4
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 4.5e-06 57.0 35 71.4


User provided reference genes

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