Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G61530 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 4.7e-197 691.0 355 100.0
AL5G43890 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 6.8e-188 660.6 355 96.9
BcaB02g07374 Brassica carinata HOM05D004048 ORTHO05D004859 1.9e-182 642.5 348 93.4
Sp5g01880 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.6e-181 639.4 355 93.2
BraA07t30196Z Brassica rapa HOM05D004048 ORTHO05D004859 1.0e-180 636.7 346 93.4
BolC6t37921H Brassica oleracea HOM05D004048 ORTHO05D004859 1.8e-180 636.0 346 93.1
A07p25550 Brassica napus HOM05D004048 ORTHO05D004859 2.3e-180 635.6 346 93.1
BcaC08g45130 Brassica carinata HOM05D004048 ORTHO05D004859 4.0e-180 634.8 346 92.8
C06p27540 Brassica napus HOM05D004048 ORTHO05D004859 3.4e-179 631.7 346 92.5
A09p53600 Brassica napus HOM05D004048 ORTHO05D004859 1.1e-174 616.7 355 90.1
BcaC07g40651 Brassica carinata HOM05D004048 ORTHO05D004859 5.6e-174 614.4 355 89.6
BolC8t51222H Brassica oleracea HOM05D004048 ORTHO05D004859 5.6e-174 614.4 355 89.6
Thhalv10001521m.g Eutrema salsugineum HOM05D004048 ORTHO05D004859 5.6e-174 614.4 355 88.7
BraA09t40782Z Brassica rapa HOM05D004048 ORTHO05D004859 7.3e-174 614.0 355 90.4
C08p36390 Brassica napus HOM05D004048 ORTHO05D004859 1.2e-173 613.2 355 89.6
Carub.0005s2822 Capsella rubella HOM05D004048 ORTHO05D004859 3.6e-173 611.7 331 94.0
Sp4g28180 Schrenkiella parvula HOM05D004048 ORTHO05D004859 1.0e-172 610.1 352 88.4
Aa31LG10G15450 Aethionema arabicum HOM05D004048 ORTHO05D004859 2.3e-172 609.0 353 87.8
Carub.0004s2881 Capsella rubella HOM05D004048 ORTHO05D004859 4.4e-171 604.7 348 88.8
AT2G46110 Arabidopsis thaliana HOM05D004048 ORTHO05D004859 1.7e-170 602.8 348 88.5
THA.LOC104817317 Tarenaya hassleriana HOM05D004048 ORTHO05D004859 1.0e-167 593.6 349 87.4
BcaC07g40671 Brassica carinata HOM05D004048 ORTHO05D004859 1.2e-165 586.6 362 85.9
Dinv32522 Davidia involucrata HOM05D004048 ORTHO05D004859 6.2e-165 584.3 333 87.7
Potri.014G090500 Populus trichocarpa HOM05D004048 ORTHO05D004859 3.1e-164 582.0 331 87.6
CSS0029554 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 4.0e-164 581.6 341 84.8
Ciclev10020577m.g Citrus clementina HOM05D004048 ORTHO05D004859 5.2e-164 581.3 337 86.6
Manes.05G029300 Manihot esculenta HOM05D004048 ORTHO05D004859 6.8e-164 580.9 341 84.5
CSS0027402 Camellia sinensis var. sinensis HOM05D004048 ORTHO05D004859 1.2e-163 580.1 341 84.5
TWI23G0617 Tripterygium wilfordii HOM05D004048 ORTHO05D004859 3.4e-163 578.6 334 88.0
COL.COLO4_12778 Corchorus olitorius HOM05D004048 ORTHO05D004859 4.4e-163 578.2 345 84.3
MD07G1131200 Malus domestica HOM05D004048 ORTHO05D004859 1.7e-162 576.2 349 82.8
QL04p055532 Quercus lobata HOM05D004048 ORTHO05D004859 2.9e-162 575.5 338 85.8
Hund27241 Selenicereus undatus HOM05D004048 ORTHO05D004859 2.9e-162 575.5 328 87.8
Sabra14G0065600 Salix brachista HOM05D004048 ORTHO05D004859 3.7e-162 575.1 331 86.7
Actinidia10075 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.4e-161 573.2 339 85.3
vmacro13227 Vaccinium macrocarpon HOM05D004048 ORTHO05D004859 2.4e-161 572.4 335 85.4
DCAR_025214 Daucus carota HOM05D004048 ORTHO05D004859 4.1e-161 571.6 346 84.1
Thecc.01G352400 Theobroma cacao HOM05D004048 ORTHO05D004859 1.2e-160 570.1 345 82.9
Prupe.2G177600 Prunus persica HOM05D004048 ORTHO05D004859 3.5e-160 568.5 336 85.1
Sc01g0003210 Simmondsia chinensis HOM05D004048 ORTHO05D004859 3.5e-160 568.5 329 85.7
TAR375G1056 Trochodendron aralioides HOM05D004048 ORTHO05D004859 3.5e-160 568.5 344 82.6
Lj9C589T5 Lonicera japonica HOM05D004048 ORTHO05D004859 6.0e-160 567.8 349 82.8
CiPaw.02G034800 Carya illinoinensis HOM05D004048 ORTHO05D004859 7.8e-160 567.4 347 83.3
Haze_15565 Corylus avellana HOM05D004048 ORTHO05D004859 7.8e-160 567.4 350 82.3
Migut.B01799 Erythranthe guttata HOM05D004048 ORTHO05D004859 1.0e-159 567.0 343 82.2
Hma1.2p1_0335F.1_g128890 Hydrangea macrophylla HOM05D004048 ORTHO05D004859 1.0e-159 567.0 340 83.2
Nitab4.5_0000615g0020 Nicotiana tabacum HOM05D004048 ORTHO05D004859 3.9e-159 565.1 353 80.7
CAN.G439.29 Capsicum annuum HOM05D004048 ORTHO05D004859 6.6e-159 564.3 329 85.7
PSO170G0644 Papaver somniferum HOM05D004048 ORTHO05D004859 1.1e-158 563.5 335 82.7
FvH4_7g15370 Fragaria vesca HOM05D004048 ORTHO05D004859 1.5e-158 563.1 348 81.9
Duzib268G0835 Durio zibethinus HOM05D004048 ORTHO05D004859 1.9e-158 562.8 352 80.1
FAN06G1753 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.9e-158 562.8 348 81.9
Atru.chr7.1494 Acer truncatum HOM05D004048 ORTHO05D004859 3.3e-158 562.0 348 81.3
FAN10G1698 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.6e-158 561.2 336 83.9
FAN10G3606 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.6e-158 561.2 336 83.9
Gohir.D08G043100 Gossypium hirsutum HOM05D004048 ORTHO05D004859 7.3e-158 560.8 337 83.4
PGR004G0897 Punica granatum HOM05D004048 ORTHO05D004859 7.3e-158 560.8 349 80.8
SGA_v2.0_scaffold4G02279 Striga asiatica HOM05D004048 ORTHO05D004859 7.3e-158 560.8 330 83.9
PSO063G1481 Papaver somniferum HOM05D004048 ORTHO05D004859 1.2e-157 560.1 335 82.1
Gorai.004G041700 Gossypium raimondii HOM05D004048 ORTHO05D004859 1.6e-157 559.7 337 83.4
Solyc09g007130.3 Solanum lycopersicum HOM05D004048 ORTHO05D004859 1.6e-157 559.7 338 82.8
RcHm_v2.0_Chr1g0357691 Rosa chinensis HOM05D004048 ORTHO05D004859 2.1e-157 559.3 331 83.7
AUR62004413 Chenopodium quinoa HOM05D004048 ORTHO05D004859 2.8e-157 558.9 328 83.8
Gohir.A08G032200 Gossypium hirsutum HOM05D004048 ORTHO05D004859 3.6e-157 558.5 337 82.5
PGSC0003DMG400002011 Solanum tuberosum HOM05D004048 ORTHO05D004859 3.6e-157 558.5 329 84.2
Eucgr.B01988 Eucalyptus grandis HOM05D004048 ORTHO05D004859 6.2e-157 557.8 332 84.3
FAN03G0096 Fragaria x ananassa HOM05D004048 ORTHO05D004859 6.2e-157 557.8 336 83.3
Aqoxy5G04084 Aquilegia oxysepala HOM05D004048 ORTHO05D004859 8.1e-157 557.4 326 85.0
Rhsim07G0205800 Rhododendron simsii HOM05D004048 ORTHO05D004859 8.1e-157 557.4 363 78.8
Nn1g01686 Nelumbo nucifera HOM05D004048 ORTHO05D004859 2.3e-156 555.8 343 81.0
FAN06G0189 Fragaria x ananassa HOM05D004048 ORTHO05D004859 8.9e-156 553.9 365 78.4
Peaxi162Scf00217g00711 Petunia axillaris HOM05D004048 ORTHO05D004859 1.2e-155 553.5 342 81.9
Gohir.D08G154300 Gossypium hirsutum HOM05D004048 ORTHO05D004859 2.0e-155 552.7 350 79.4
Gorai.004G160400 Gossypium raimondii HOM05D004048 ORTHO05D004859 2.0e-155 552.7 350 79.4
EL10Ac1g00354 Beta vulgaris HOM05D004048 ORTHO05D004859 2.6e-155 552.4 327 82.3
Cc02_g21240 Coffea canephora HOM05D004048 ORTHO05D004859 2.6e-155 552.4 323 84.5
CARHR107270 Cardamine hirsuta HOM05D004048 ORTHO05D004859 9.9e-155 550.4 350 82.9
CsaV3_7G025860 Cucumis sativus L. HOM05D004048 ORTHO05D004859 8.3e-154 547.4 334 80.8
arahy.Tifrunner.gnm1.ann1.9CR96V Arachis hypogaea HOM05D004048 ORTHO05D004859 4.1e-153 545.0 336 80.1
Lj1g0027864 Lotus japonicus HOM05D004048 ORTHO05D004859 9.2e-153 543.9 335 80.3
MBI03_g34597_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 9.2e-153 543.9 329 81.8
VMungo0331G0386 Vigna mungo HOM05D004048 ORTHO05D004859 1.2e-152 543.5 344 79.1
Glyma.07G064600 Glycine max HOM05D004048 ORTHO05D004859 1.6e-152 543.1 346 80.1
HanXRQChr17g0562171 Helianthus annuus HOM05D004048 ORTHO05D004859 1.6e-152 543.1 328 82.6
Lsat_1_v5_gn_4_35260 Lactuca sativa HOM05D004048 ORTHO05D004859 1.6e-152 543.1 326 83.4
arahy.Tifrunner.gnm1.ann1.8BBS1S Arachis hypogaea HOM05D004048 ORTHO05D004859 2.1e-152 542.7 336 79.8
CANSAT56G4107 Cannabis sativa HOM05D004048 ORTHO05D004859 2.1e-152 542.7 348 79.9
Duzib138G1147 Durio zibethinus HOM05D004048 ORTHO05D004859 6.0e-152 541.2 374 74.9
Lj5g0009706 Lotus japonicus HOM05D004048 ORTHO05D004859 1.3e-151 540.0 352 78.4
Lalb_Chr17g0338041 Lupinus albus HOM05D004048 ORTHO05D004859 1.6e-149 533.1 337 79.2
Psat4g156920 Pisum sativum HOM05D004048 ORTHO05D004859 1.6e-149 533.1 332 80.1
TPR.G28287 Trifolium pratense HOM05D004048 ORTHO05D004859 4.7e-149 531.6 342 78.7
HPP92_005267 Vanilla planifolia HOM05D004048 ORTHO05D004859 8.1e-149 530.8 331 79.2
RcHm_v2.0_Chr1g0357711 Rosa chinensis HOM05D004048 ORTHO05D004859 1.4e-148 530.0 329 79.3
Nitab4.5_0005222g0030 Nicotiana tabacum HOM05D004048 ORTHO05D004859 2.4e-148 529.3 346 78.6
Medtr8g028555 Medicago truncatula HOM05D004048 ORTHO05D004859 1.5e-147 526.6 331 79.5
Rhsim07G0010400 Rhododendron simsii HOM05D004048 ORTHO05D004859 4.4e-147 525.0 327 81.7
AUR62022619 Chenopodium quinoa HOM05D004048 ORTHO05D004859 7.6e-147 524.2 301 85.0
MELO3C014805.2 Cucumis melo HOM05D004048 ORTHO05D004859 7.6e-147 524.2 332 78.3
arahy.Tifrunner.gnm1.ann1.8G3C0P Arachis hypogaea HOM05D004048 ORTHO05D004859 1.3e-146 523.5 327 78.6
Oeu054354.2 Olea europaea HOM05D004048 ORTHO05D004859 2.4e-145 519.2 370 72.4
TPR.G37181 Trifolium pratense HOM05D004048 ORTHO05D004859 3.2e-145 518.8 342 76.3
Ca_03490_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 4.6e-144 515.0 368 72.6
MELO3C012767.2 Cucumis melo HOM05D004048 ORTHO05D004859 1.0e-143 513.8 398 68.1
Sopen09g002000 Solanum pennellii HOM05D004048 ORTHO05D004859 2.3e-143 512.7 297 86.2
Rhsim07G0206900 Rhododendron simsii HOM05D004048 ORTHO05D004859 1.1e-140 503.8 380 70.5
unitig_60.g25627 Utricularia gibba HOM05D004048 ORTHO05D004859 2.0e-139 499.6 331 76.1
Ah.05g180160 Amaranthus hybridus HOM05D004048 ORTHO05D004859 6.4e-138 494.6 328 77.1
FvH4_7g15371 Fragaria vesca HOM05D004048 ORTHO05D004859 1.1e-137 493.8 359 70.8
SEGI_12250 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 5.4e-137 491.5 331 71.9
ClCG09G009090 Citrullus lanatus HOM05D004048 ORTHO05D004859 6.0e-136 488.0 334 74.3
Phvul.010G104900 Phaseolus vulgaris HOM05D004048 ORTHO05D004859 6.0e-136 488.0 286 84.6
BcaC07g42671 Brassica carinata HOM05D004048 ORTHO05D004859 1.9e-129 466.5 353 73.4
GSVIVG01026967001 Vitis vinifera HOM05D004048 ORTHO05D004859 1.3e-127 460.3 262 89.3
Mapoly0035s0043 Marchantia polymorpha HOM05D004048 ORTHO05D004859 1.1e-126 457.2 350 66.0
Cpa.g.sc11.73 Carica papaya HOM05D004048 ORTHO05D004859 1.9e-126 456.4 331 72.8
Pp3c7_220 Physcomitrium patens HOM05D004048 ORTHO05D004859 1.1e-124 450.7 347 64.8
SMO144G0210 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.1e-124 450.7 353 63.7
Glyma.09G254700 Glycine max HOM05D004048 ORTHO05D004859 5.3e-124 448.4 309 73.8
AagrBONN_evm.TU.Sc2ySwM_117.1042 Anthoceros agrestis HOM05D004048 ORTHO05D004859 7.6e-123 444.5 331 67.1
FAN10G3616 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-122 443.4 366 65.3
AagrBONN_evm.TU.Sc2ySwM_117.2358 Anthoceros agrestis HOM05D004048 ORTHO05D004859 2.2e-122 443.0 331 66.8
Os01g0225500 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 8.4e-122 441.0 308 70.8
MCO13G154 Micromonas commoda HOM05D004048 ORTHO05D004859 6.0e-120 434.9 315 68.9
Gohir.A08G133000 Gossypium hirsutum HOM05D004048 ORTHO05D004859 1.0e-119 434.1 266 82.3
ECA234G0147 Erigeron canadensis HOM05D004048 ORTHO05D004859 1.8e-119 433.3 283 79.5
Cre12.g508550 Chlamydomonas reinhardtii HOM05D004048 ORTHO05D004859 4.3e-118 428.7 325 65.2
CBR_g45417 Chara braunii HOM05D004048 ORTHO05D004859 2.4e-116 422.9 340 62.1
CDE11G0110 Ceratophyllum demersum HOM05D004048 ORTHO05D004859 5.8e-115 418.3 245 85.3
Zm00001eb339000 Zea mays HOM05D004048 ORTHO05D004859 6.3e-109 398.3 247 82.2
Nn6g32447 Nelumbo nucifera HOM05D004048 ORTHO05D004859 1.4e-108 397.1 344 62.8
Medtr4g037305 Medicago truncatula HOM05D004048 ORTHO05D004859 6.9e-108 394.8 241 82.2
ATR0751G082 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.5e-107 393.7 260 77.7
FAN06G1997 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.5e-107 393.7 369 58.5
FAN06G4041 Fragaria x ananassa HOM05D004048 ORTHO05D004859 9.4e-105 384.4 275 71.6
SMO356G0035 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 1.2e-104 384.0 302 64.6
SMO119G0299 Selaginella moellendorffii HOM05D004048 ORTHO05D004859 6.1e-104 381.7 274 67.5
SEGI_21771 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 9.1e-100 367.9 243 74.1
Eucgr.B01984 Eucalyptus grandis HOM05D004048 ORTHO05D004859 2.0e-99 366.7 360 58.6
FAN10G1509 Fragaria x ananassa HOM05D004048 ORTHO05D004859 5.9e-99 365.2 246 76.4
ATR0751G137 Amborella trichopoda HOM05D004048 ORTHO05D004859 9.4e-97 357.8 233 76.0
PRCOL_00005166 Prasinoderma coloniale HOM05D004048 ORTHO05D004859 7.9e-96 354.8 320 56.2
AL4G45340 Arabidopsis lyrata HOM05D004048 ORTHO05D004859 3.7e-93 345.9 199 87.9
Eucgr.B01986 Eucalyptus grandis HOM05D004048 ORTHO05D004859 3.2e-73 279.6 285 57.9
Medtr4g037245 Medicago truncatula HOM05D004048 ORTHO05D004859 3.2e-73 279.6 203 72.9
Cfa001640 Carpinus fangiana HOM05D004048 ORTHO05D004859 3.4e-62 243.0 303 46.5
arahy.Tifrunner.gnm1.ann1.CIF5FW Arachis hypogaea HOM05D004048 ORTHO05D004859 1.6e-59 234.2 150 73.3
SEGI_25526 Sequoiadendron giganteum HOM05D004048 ORTHO05D004859 7.8e-59 231.9 160 68.8
PGSC0003DMG400018716 Solanum tuberosum HOM05D004048 ORTHO05D004859 7.5e-54 215.3 138 79.0
Cfa003872 Carpinus fangiana HOM05D004048 ORTHO05D004859 4.1e-52 209.5 348 44.5
Os01g0225400 Oryza sativa ssp. japonica HOM05D004048 ORTHO05D004859 5.4e-52 209.1 129 78.3
TPR.G28294 Trifolium pratense HOM05D004048 ORTHO05D004859 4.6e-51 206.1 251 51.4
SHI16536 Sapria himalayana HOM05D004048 ORTHO05D004859 1.5e-49 201.1 124 78.2
Haze_27487 Corylus avellana HOM05D004048 ORTHO05D004859 8.3e-45 185.3 236 41.5
Haze_26957 Corylus avellana HOM05D005470 ORTHO05D006855 3.0e-42 176.8 217 46.5
MBI17_g16531_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 5.2e-39 166.0 104 76.0
CAN.G439.28 Capsicum annuum HOM05D004048 ORTHO05D004859 1.0e-34 151.8 88 79.5
Lj6g0001313 Lotus japonicus HOM05D004048 ORTHO05D004859 1.0e-34 151.8 97 72.2
MBI12_g43904_MAGBIO Magnolia biondii HOM05D004048 ORTHO05D004859 1.3e-34 151.4 96 82.3
FAN01G2460 Fragaria x ananassa HOM05D004048 ORTHO05D004859 1.7e-34 151.0 97 75.3
Ca_03489_v3 Cicer arietinum L. HOM05D004048 ORTHO05D004859 5.6e-33 146.0 110 70.9
Medtr4g037315 Medicago truncatula HOM05D004048 ORTHO05D004859 1.6e-32 144.4 96 71.9
Actinidia20163 Actinidia chinensis HOM05D004048 ORTHO05D004859 1.7e-29 134.4 189 50.3
Medtr4g037275 Medicago truncatula HOM05D004048 ORTHO05D004859 6.4e-29 132.5 76 81.6
AL4G45350 Arabidopsis lyrata HOM05D004048 ORTHO05D038698 3.9e-26 123.2 77 81.8
arahy.Tifrunner.gnm1.ann1.63JPLQ Arachis hypogaea HOM05D004048 ORTHO05D004859 5.6e-25 119.4 83 66.3
ATR0751G274 Amborella trichopoda HOM05D004048 ORTHO05D004859 1.7e-21 107.8 73 65.8
FAN10G2371 Fragaria x ananassa HOM05D004048 ORTHO05D038698 1.9e-20 104.4 83 67.5
Potri.002G164601 Populus trichocarpa HOM05D004048 ORTHO05D004859 3.5e-19 100.1 72 66.7
SGA_v2.0_scaffold4G02383 Striga asiatica HOM05D004048 ORTHO05D051375 7.9e-19 99.0 63 81.0
HanXRQChr15g0474641 Helianthus annuus HOM05D004048 ORTHO05D004859 2.3e-18 97.4 62 77.4
arahy.Tifrunner.gnm1.ann1.DMYH1R Arachis hypogaea HOM05D004048 ORTHO05D004859 1.5e-17 94.7 74 60.8
DCAR_025216 Daucus carota HOM05D003118 ORTHO05D003618 9.6e-17 92.0 78 69.2
arahy.Tifrunner.gnm1.ann1.GKUV9U Arachis hypogaea HOM05D004048 ORTHO05D004859 5.6e-09 66.2 48 70.8


User provided reference genes

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