Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.2e-48 196.4 119 100.0
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 3.2e-41 171.8 119 89.1
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 2.7e-40 168.7 121 87.6
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 7.9e-40 167.2 119 79.0
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 3.9e-39 164.9 119 79.8
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 2.1e-37 159.1 119 77.3
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 3.1e-36 155.2 120 76.7
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 5.3e-36 154.5 120 76.7
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 1.2e-35 153.3 120 76.7
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 1.2e-35 153.3 120 76.7
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 1.2e-35 153.3 120 76.7
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 3.4e-35 151.8 120 75.0
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 1.7e-34 149.4 120 75.0
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 2.1e-32 142.5 120 70.8
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 6.0e-32 141.0 120 70.0
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 3.7e-29 131.7 110 72.7
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 3.7e-29 131.7 110 72.7
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 3.7e-29 131.7 110 72.7
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 1.2e-27 126.7 119 61.3
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 3.4e-27 125.2 119 59.7
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 3.4e-27 125.2 119 61.3
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 3.4e-27 125.2 119 59.7
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 7.6e-27 124.0 119 59.7
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 7.6e-27 124.0 119 59.7
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 7.6e-27 124.0 119 59.7
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 7.6e-27 124.0 119 59.7
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 1.0e-26 123.6 119 59.7
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 1.0e-26 123.6 119 59.7
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 1.0e-26 123.6 119 59.7
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 1.0e-26 123.6 119 59.7
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 1.3e-26 123.2 119 64.7
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 1.7e-26 122.9 119 58.8
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 1.7e-26 122.9 119 58.8
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 5.0e-26 121.3 119 62.2
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 5.0e-26 121.3 119 62.2
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 8.4e-26 120.6 120 63.3
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 8.4e-26 120.6 120 63.3
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 1.1e-25 120.2 119 62.2
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 5.5e-25 117.9 120 63.3
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 5.5e-25 117.9 121 56.2
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 3.5e-24 115.2 123 61.0
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 3.9e-23 111.7 120 58.3
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 3.3e-22 108.6 130 63.1
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 8.2e-21 104.0 125 56.0
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.4e-15 86.7 61 72.1
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.8e-15 86.3 61 72.1
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 3.9e-15 85.1 61 70.5
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 6.7e-15 84.3 62 64.5
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 1.5e-14 83.2 61 68.9
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 2.5e-14 82.4 63 66.7
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 2.5e-14 82.4 61 68.9
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 2.5e-14 82.4 61 68.9
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 3.3e-14 82.0 63 68.3
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 3.3e-14 82.0 61 67.2
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 4.3e-14 81.6 61 68.9
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 5.7e-14 81.3 61 68.9
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 5.7e-14 81.3 63 63.5
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 5.7e-14 81.3 62 59.7
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 5.7e-14 81.3 63 63.5
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 5.7e-14 81.3 63 63.5
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 7.4e-14 80.9 63 66.7
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 1.3e-13 80.1 61 65.6
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 1.3e-13 80.1 63 61.9
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 1.3e-13 80.1 63 65.1
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 1.7e-13 79.7 61 65.6
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 4.8e-13 78.2 61 60.7
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 4.8e-13 78.2 61 63.9
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 6.3e-13 77.8 61 63.9
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 6.3e-13 77.8 59 61.0
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 8.2e-13 77.4 63 61.9
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 8.2e-13 77.4 63 58.7
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 1.1e-12 77.0 61 62.3
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 1.1e-12 77.0 60 61.7
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 1.4e-12 76.6 60 61.7
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 1.8e-12 76.3 58 62.1
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 2.4e-12 75.9 61 63.9
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 3.1e-12 75.5 61 63.9
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 3.1e-12 75.5 61 63.9
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 4.1e-12 75.1 112 49.1
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.1e-12 75.1 112 43.8
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.1e-12 75.1 112 49.1
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 5.3e-12 74.7 60 61.7
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 5.3e-12 74.7 63 58.7
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 5.3e-12 74.7 63 60.3
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 5.3e-12 74.7 63 58.7
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.2e-11 73.6 62 59.7
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.2e-11 73.6 62 59.7
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 1.5e-11 73.2 63 57.1
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 1.5e-11 73.2 63 57.1
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 2.0e-11 72.8 112 47.3
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 3.4e-11 72.0 61 57.4
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 3.4e-11 72.0 116 43.1
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 7.7e-11 70.9 60 53.3
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 2.2e-10 69.3 61 50.8
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 2.2e-10 69.3 61 59.0
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 2.2e-10 69.3 63 54.0
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 2.9e-10 68.9 54 61.1
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 5.0e-10 68.2 61 54.1
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 5.0e-10 68.2 62 56.5
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 8.5e-10 67.4 59 57.6
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 2.5e-09 65.9 59 57.6
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 7.2e-09 64.3 61 52.5
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 9.4e-09 63.9 64 56.2
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 9.4e-09 63.9 52 59.6
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 1.2e-08 63.5 61 55.7
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 1.8e-07 59.7 50 58.0
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 2.3e-07 59.3 57 47.4
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 3.0e-07 58.9 48 58.3
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 3.0e-07 58.9 48 58.3
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 6.7e-07 57.8 45 57.8


User provided reference genes

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