Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G58840 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 7.4e-101 371.3 319 100.0
Carub.0005s2562 Capsella rubella HOM05D006785 ORTHO05D006259 8.5e-65 251.5 230 77.8
Sp4g24990 Schrenkiella parvula HOM05D006785 ORTHO05D006259 3.6e-47 193.0 227 55.9
Thhalv10006112m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 7.5e-45 185.3 316 61.4
CARHR169250 Cardamine hirsuta HOM05D006785 ORTHO05D006259 2.8e-44 183.3 155 72.3
AL5G40640 Arabidopsis lyrata HOM05D006785 ORTHO05D006259 2.4e-43 180.3 148 73.6
C04p03820 Brassica napus HOM05D006785 ORTHO05D006259 8.9e-38 161.8 230 48.7
BolC4t22018H Brassica oleracea HOM05D006785 ORTHO05D006259 1.2e-37 161.4 230 48.7
BraA05t19307Z Brassica rapa HOM05D006785 ORTHO05D006259 1.7e-36 157.5 230 48.3
THA.LOC104802276 Tarenaya hassleriana HOM05D006785 ORTHO05D006259 3.7e-36 156.4 318 56.3
Sp5g04020 Schrenkiella parvula HOM05D006785 ORTHO05D006259 1.4e-30 137.9 156 63.5
ClCG02G018390 Citrullus lanatus HOM05D006785 ORTHO05D006259 1.7e-25 120.9 231 41.6
CsaV3_6G015830 Cucumis sativus L. HOM05D006785 ORTHO05D006259 7.3e-24 115.5 231 36.8
TWI59G0461 Tripterygium wilfordii HOM05D006785 ORTHO05D006259 4.7e-23 112.8 234 47.0
BcaB02g07495 Brassica carinata HOM05D006785 ORTHO05D006259 3.7e-20 103.2 152 52.0
MELO3C019688.2 Cucumis melo HOM05D006785 ORTHO05D006259 8.3e-20 102.1 231 48.9
A07p24380 Brassica napus HOM05D006785 ORTHO05D006259 3.2e-19 100.1 112 58.9
CANSAT64G1891 Cannabis sativa HOM05D006785 ORTHO05D006259 5.4e-19 99.4 233 44.2
Manes.02G084200 Manihot esculenta HOM05D006785 ORTHO05D006259 1.1e-16 91.7 229 33.6
Lalb_Chr10g0106721 Lupinus albus HOM05D006785 ORTHO05D006259 3.3e-16 90.1 231 42.4
Cpa.g.sc50.80 Carica papaya HOM05D006785 ORTHO05D006259 7.3e-16 89.0 224 51.8
Sed0007746 Sechium edule HOM05D006785 ORTHO05D006259 3.6e-15 86.7 231 39.4
A05p03170 Brassica napus HOM05D006785 ORTHO05D006259 4.7e-15 86.3 78 65.4
MD17G1139500 Malus domestica HOM05D006785 ORTHO05D006259 8.1e-15 85.5 234 48.3
PGR042G2728 Punica granatum HOM05D006785 ORTHO05D006259 8.1e-15 85.5 228 39.9
MD09G1151900 Malus domestica HOM05D006785 ORTHO05D006259 4.0e-14 83.2 230 42.6
Lalb_Chr17g0348301 Lupinus albus HOM05D006785 ORTHO05D006259 7.6e-13 79.0 233 41.2
AT1G06530 Arabidopsis thaliana HOM05D006785 ORTHO05D006259 1.3e-12 78.2 229 30.1
Sed0020726 Sechium edule HOM05D006785 ORTHO05D006259 1.3e-12 78.2 231 32.0
Atru.chr6.2094 Acer truncatum HOM05D006785 ORTHO05D006259 1.7e-12 77.8 231 45.0
RcHm_v2.0_Chr2g0151481 Rosa chinensis HOM05D006785 ORTHO05D006259 2.2e-12 77.4 234 48.3
Prupe.3G172600 Prunus persica HOM05D006785 ORTHO05D006259 1.1e-11 75.1 236 48.3
QL08p044083 Quercus lobata HOM05D006785 ORTHO05D006259 1.1e-11 75.1 236 40.3
FAN02G2853 Fragaria x ananassa HOM05D006785 ORTHO05D006259 5.4e-11 72.8 238 48.7
Cfa021376 Carpinus fangiana HOM05D006785 ORTHO05D006259 7.1e-11 72.4 236 44.1
FAN14G2666 Fragaria x ananassa HOM05D006785 ORTHO05D006259 9.2e-11 72.0 234 47.4
Aa31LG10G13400 Aethionema arabicum HOM05D006785 ORTHO05D006259 1.6e-10 71.2 229 32.3
Carub.0001s0590 Capsella rubella HOM05D006785 ORTHO05D006259 2.7e-10 70.5 229 29.7
Ca_06284_v3 Cicer arietinum L. HOM05D006785 ORTHO05D006259 3.5e-10 70.1 224 39.7
Manes.01G127500 Manihot esculenta HOM05D006785 ORTHO05D006259 4.6e-10 69.7 226 31.0
Haze_13495 Corylus avellana HOM05D006785 ORTHO05D006259 3.0e-09 67.0 236 43.6
FAN05G2931 Fragaria x ananassa HOM05D006785 ORTHO05D006259 3.9e-09 66.6 231 45.9
BcaC08g44946 Brassica carinata HOM05D006785 ORTHO05D023842 1.5e-08 64.7 163 50.3
CSS0028256 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 2.5e-08 63.9 248 27.8
CSS0047125 Camellia sinensis var. sinensis HOM05D006785 ORTHO05D006259 2.5e-08 63.9 248 27.8
Glyma.02G287000 Glycine max HOM05D006785 ORTHO05D006259 4.3e-08 63.2 230 36.1
Actinidia32516 Actinidia chinensis HOM05D006785 ORTHO05D006259 5.6e-08 62.8 262 27.9
FAN09G1973 Fragaria x ananassa HOM05D006785 ORTHO05D006259 5.6e-08 62.8 238 47.5
BraA07t30085Z Brassica rapa HOM05D006785 ORTHO05D023842 9.6e-08 62.0 166 50.6
Medtr5g091710 Medicago truncatula HOM05D006785 ORTHO05D006259 9.6e-08 62.0 228 37.3
arahy.Tifrunner.gnm1.ann1.PX2Y9B Arachis hypogaea HOM05D006785 ORTHO05D006259 1.6e-07 61.2 233 35.6
Thhalv10009835m.g Eutrema salsugineum HOM05D006785 ORTHO05D006259 1.6e-07 61.2 149 30.9
Gohir.A12G079000 Gossypium hirsutum HOM05D006785 ORTHO05D006259 3.6e-07 60.1 227 41.0
Thecc.01G161700 Theobroma cacao HOM05D006785 ORTHO05D006259 1.1e-06 58.5 103 69.9
BcaB06g29269 Brassica carinata HOM05D006785 ORTHO05D006259 2.4e-06 57.4 165 39.4
Lalb_Chr05g0211951 Lupinus albus HOM05D006785 ORTHO05D006259 2.4e-06 57.4 163 36.2
vmacro12460 Vaccinium macrocarpon HOM05D006785 ORTHO05D006259 2.4e-06 57.4 229 27.9
CiPaw.03G189000 Carya illinoinensis HOM05D006785 ORTHO05D006259 8.9e-06 55.5 235 30.6


User provided reference genes

Program Settings