Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G58830 Arabidopsis thaliana HOM05D005636 ORTHO05D006912 9.9e-192 673.3 349 100.0
AL5G40630 Arabidopsis lyrata HOM05D005636 ORTHO05D006912 1.7e-183 646.0 344 93.3
Carub.0005s2561 Capsella rubella HOM05D005636 ORTHO05D006912 9.6e-179 630.2 349 89.7
CARHR169230 Cardamine hirsuta HOM05D005636 ORTHO05D006912 1.8e-172 609.4 344 88.4
Thhalv10006084m.g Eutrema salsugineum HOM05D005636 ORTHO05D006912 1.7e-167 592.8 344 85.8
Sp5g04030 Schrenkiella parvula HOM05D005636 ORTHO05D006912 6.1e-165 584.3 345 85.2
BraA07t30084Z Brassica rapa HOM05D005636 ORTHO05D006912 7.4e-163 577.4 352 84.4
C06p25760 Brassica napus HOM05D005636 ORTHO05D006912 3.7e-162 575.1 352 84.4
BolC6t37738H Brassica oleracea HOM05D005636 ORTHO05D006912 3.7e-162 575.1 352 84.4
A07p24370 Brassica napus HOM05D005636 ORTHO05D006912 8.2e-162 573.9 351 83.8
BcaB02g07496 Brassica carinata HOM05D005636 ORTHO05D006912 1.0e-159 567.0 354 83.6
BcaC08g44945 Brassica carinata HOM05D005636 ORTHO05D006912 5.0e-151 538.1 352 80.7
Aa31LG10G13390 Aethionema arabicum HOM05D005636 ORTHO05D006912 8.2e-146 520.8 349 76.5
THA.LOC104802275 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 5.2e-132 474.9 353 72.5
THA.LOC104803221 Tarenaya hassleriana HOM05D005636 ORTHO05D006912 1.7e-122 443.4 349 68.8
BcaC08g44944 Brassica carinata HOM05D005636 ORTHO05D006912 6.6e-119 431.4 226 92.5
Cpa.g.sc50.79 Carica papaya HOM05D005636 ORTHO05D006912 1.2e-109 400.6 283 68.2
Thecc.01G161100 Theobroma cacao HOM05D005636 ORTHO05D006912 7.8e-104 381.3 356 56.7
Ciclev10031950m.g Citrus clementina HOM05D005636 ORTHO05D006912 2.8e-101 372.9 292 63.4
COL.COLO4_33742 Corchorus olitorius HOM05D005636 ORTHO05D006912 8.1e-101 371.3 360 55.6
Gohir.A05G378700 Gossypium hirsutum HOM05D005636 ORTHO05D006912 8.9e-100 367.9 277 66.1
CSS0038062 Camellia sinensis var. sinensis HOM05D005636 ORTHO05D006912 1.2e-99 367.5 357 55.5
Gorai.012G041700 Gossypium raimondii HOM05D005636 ORTHO05D006912 1.5e-99 367.1 277 65.7
Gohir.D04G036900 Gossypium hirsutum HOM05D005636 ORTHO05D006912 3.4e-99 365.9 277 65.3
Duzib187G1993 Durio zibethinus HOM05D005636 ORTHO05D006912 7.5e-99 364.8 352 55.7
Sabra02G0049100 Salix brachista HOM05D005636 ORTHO05D006912 2.2e-98 363.2 232 73.3
Potri.002G060600 Populus trichocarpa HOM05D005636 ORTHO05D006912 4.9e-98 362.1 224 75.4
Manes.02G084000 Manihot esculenta HOM05D005636 ORTHO05D006912 1.9e-97 360.1 338 55.0
HanXRQChr12g0369761 Helianthus annuus HOM05D005636 ORTHO05D006912 2.4e-97 359.8 292 60.6
MELO3C014464.2 Cucumis melo HOM05D005636 ORTHO05D006912 2.7e-96 356.3 256 63.7
CsaV3_6G038020 Cucumis sativus L. HOM05D005636 ORTHO05D006912 3.5e-96 355.9 256 64.5
MD17G1140200 Malus domestica HOM05D005636 ORTHO05D006912 3.5e-96 355.9 356 53.7
Medtr1g046360 Medicago truncatula HOM05D005636 ORTHO05D006912 7.8e-96 354.8 271 63.8
Actinidia11200 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.3e-95 354.0 357 53.8
Lsat_1_v5_gn_8_32020 Lactuca sativa HOM05D005636 ORTHO05D006912 1.3e-95 354.0 222 73.0
Glyma.20G056400 Glycine max HOM05D005636 ORTHO05D006912 2.3e-95 353.2 274 63.1
Lj6g0012077 Lotus japonicus HOM05D005636 ORTHO05D006912 3.9e-95 352.4 259 64.9
Potri.005G201100 Populus trichocarpa HOM05D005636 ORTHO05D006912 3.9e-95 352.4 226 72.1
Atru.chr1.3606 Acer truncatum HOM05D005636 ORTHO05D006912 5.1e-95 352.1 228 71.1
Dinv31558 Davidia involucrata HOM05D005636 ORTHO05D006912 5.1e-95 352.1 350 53.1
FAN09G4115 Fragaria x ananassa HOM05D005636 ORTHO05D006912 5.1e-95 352.1 355 54.9
Sabra05G0153000 Salix brachista HOM05D005636 ORTHO05D006912 1.1e-94 350.9 226 70.8
Medtr3g079530 Medicago truncatula HOM05D005636 ORTHO05D006912 1.5e-94 350.5 271 63.8
Cfa022913 Carpinus fangiana HOM05D005636 ORTHO05D006912 1.9e-94 350.1 214 77.6
Oeu040028.1 Olea europaea HOM05D005636 ORTHO05D006912 1.9e-94 350.1 346 54.3
Eucgr.K01200 Eucalyptus grandis HOM05D005636 ORTHO05D006912 3.3e-94 349.4 357 53.2
ECA233G1750 Erigeron canadensis HOM05D005636 ORTHO05D006912 4.3e-94 349.0 220 73.6
FvH4_6g38130 Fragaria vesca HOM05D005636 ORTHO05D006912 4.3e-94 349.0 359 53.5
FAN14G2746 Fragaria x ananassa HOM05D005636 ORTHO05D006912 5.6e-94 348.6 354 54.0
RcHm_v2.0_Chr2g0151351 Rosa chinensis HOM05D005636 ORTHO05D006912 7.3e-94 348.2 364 53.6
FAN05G0596 Fragaria x ananassa HOM05D005636 ORTHO05D006912 9.5e-94 347.8 350 53.7
Hma1.2p1_0722F.1_g208750 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 9.5e-94 347.8 237 70.0
MD09G1152800 Malus domestica HOM05D005636 ORTHO05D006912 9.5e-94 347.8 338 55.9
Phvul.005G057920 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 2.1e-93 346.7 234 68.8
Phvul.002G231100 Phaseolus vulgaris HOM05D005636 ORTHO05D006912 3.6e-93 345.9 234 67.5
Ca_16256_v3 Cicer arietinum L. HOM05D005636 ORTHO05D006912 6.2e-93 345.1 268 61.2
Cc05_g09330 Coffea canephora HOM05D005636 ORTHO05D006912 8.1e-93 344.7 343 53.6
TPR.G37891 Trifolium pratense HOM05D005636 ORTHO05D006912 8.1e-93 344.7 268 61.9
Sed0000049 Sechium edule HOM05D005636 ORTHO05D006912 4.0e-92 342.4 236 65.7
Psat5g112320 Pisum sativum HOM05D005636 ORTHO05D006912 5.2e-92 342.0 234 68.8
SalBow7G3906 Salvia bowleyana HOM05D005636 ORTHO05D006912 6.8e-92 341.7 345 53.6
Lalb_Chr17g0335961 Lupinus albus HOM05D005636 ORTHO05D006912 1.2e-91 340.9 258 64.0
Oeu020065.1 Olea europaea HOM05D005636 ORTHO05D006912 1.5e-91 340.5 346 54.9
Prupe.3G171400 Prunus persica HOM05D005636 ORTHO05D006912 2.0e-91 340.1 287 59.9
CAN.G585.52 Capsicum annuum HOM05D005636 ORTHO05D006912 7.6e-91 338.2 247 64.4
Lalb_Chr04g0257641 Lupinus albus HOM05D005636 ORTHO05D006912 7.6e-91 338.2 222 70.3
Nitab4.5_0001675g0040 Nicotiana tabacum HOM05D005636 ORTHO05D006912 9.9e-91 337.8 343 52.2
GSVIVG01000791001 Vitis vinifera HOM05D005636 ORTHO05D006912 9.9e-91 337.8 226 69.9
PGSC0003DMG400017343 Solanum tuberosum HOM05D005636 ORTHO05D006912 3.8e-90 335.9 263 62.4
PGR142G4384 Punica granatum HOM05D005636 ORTHO05D006912 8.4e-90 334.7 362 50.6
ClCG09G022370 Citrullus lanatus HOM05D005636 ORTHO05D006912 2.4e-89 333.2 277 57.8
HanXRQChr13g0387431 Helianthus annuus HOM05D005636 ORTHO05D006912 3.2e-89 332.8 258 61.6
CiPaw.03G189200 Carya illinoinensis HOM05D005636 ORTHO05D006912 7.1e-89 331.6 220 72.3
Rhsim06G0118100 Rhododendron simsii HOM05D005636 ORTHO05D006912 7.1e-89 331.6 392 47.4
Sopen07g029330 Solanum pennellii HOM05D005636 ORTHO05D006912 7.1e-89 331.6 224 68.3
Nitab4.5_0005557g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 1.6e-88 330.5 219 68.9
Solyc07g055980.3 Solanum lycopersicum HOM05D005636 ORTHO05D006912 2.1e-88 330.1 224 67.9
SGA_v2.0_scaffold130G34360 Striga asiatica HOM05D005636 ORTHO05D006912 2.1e-88 330.1 224 67.9
TAR627G0895 Trochodendron aralioides HOM05D005636 ORTHO05D006912 7.8e-88 328.2 228 66.7
Migut.M00513 Erythranthe guttata HOM05D005636 ORTHO05D006912 1.0e-87 327.8 227 68.7
Peaxi162Scf00807g00219 Petunia axillaris HOM05D005636 ORTHO05D006912 2.3e-87 326.6 225 66.2
PGSC0003DMG400007795 Solanum tuberosum HOM05D005636 ORTHO05D006912 5.1e-87 325.5 262 59.5
Solyc12g011020.2 Solanum lycopersicum HOM05D005636 ORTHO05D006912 1.1e-86 324.3 224 66.1
Sopen12g006380 Solanum pennellii HOM05D005636 ORTHO05D006912 1.5e-86 323.9 262 59.2
VMungo0540G1884 Vigna mungo HOM05D005636 ORTHO05D006912 2.5e-86 323.2 209 71.8
Aqoxy1G01878 Aquilegia oxysepala HOM05D005636 ORTHO05D006912 4.3e-86 322.4 274 56.6
CAN.G164.23 Capsicum annuum HOM05D005636 ORTHO05D006912 2.1e-85 320.1 224 64.3
arahy.Tifrunner.gnm1.ann1.59ND6F Arachis hypogaea HOM05D005636 ORTHO05D006912 2.8e-85 319.7 310 52.3
QL08p044016 Quercus lobata HOM05D005636 ORTHO05D006912 6.2e-85 318.5 314 55.4
Nn6g34386 Nelumbo nucifera HOM05D005636 ORTHO05D006912 1.1e-84 317.8 278 54.7
Nitab4.5_0006934g0010 Nicotiana tabacum HOM05D005636 ORTHO05D006912 5.2e-84 315.5 347 49.3
Peaxi162Scf00111g00031 Petunia axillaris HOM05D005636 ORTHO05D006912 1.2e-83 314.3 235 65.5
SalBow7G1748 Salvia bowleyana HOM05D005636 ORTHO05D006912 2.0e-83 313.5 220 66.4
MSTRG.6754 Avicennia marina HOM05D005636 ORTHO05D006912 3.8e-82 309.3 315 53.3
PSO675G1578 Papaver somniferum HOM05D005636 ORTHO05D006912 4.9e-82 308.9 226 61.1
VMungo0540G1461 Vigna mungo HOM05D005636 ORTHO05D006912 6.4e-82 308.5 203 70.4
PSO541G3223 Papaver somniferum HOM05D005636 ORTHO05D006912 9.3e-81 304.7 226 60.2
TWI59G0166 Tripterygium wilfordii HOM05D005636 ORTHO05D006912 7.8e-80 301.6 285 54.4
vmacro12452 Vaccinium macrocarpon HOM05D005636 ORTHO05D006912 3.0e-79 299.7 287 54.4
unitig_0.g2024 Utricularia gibba HOM05D005636 ORTHO05D006912 1.9e-78 297.0 283 51.6
Hma1.2p1_0888F.1_g232810 Hydrangea macrophylla HOM05D005636 ORTHO05D006912 1.3e-77 294.3 202 70.8
EL10Ac8g19235 Beta vulgaris HOM05D005636 ORTHO05D006912 6.4e-74 282.0 236 56.4
ATR0763G116 Amborella trichopoda HOM05D005636 ORTHO05D006912 1.9e-73 280.4 216 57.9
Nitab4.5_0000446g0070 Nicotiana tabacum HOM05D005636 ORTHO05D006912 5.4e-73 278.9 349 45.8
CDE08G0457 Ceratophyllum demersum HOM05D005636 ORTHO05D006912 7.1e-73 278.5 213 59.6
CAN.G732.7 Capsicum annuum HOM05D005636 ORTHO05D006912 2.1e-72 276.9 198 65.7
Sc14g0000770 Simmondsia chinensis HOM05D005636 ORTHO05D006912 4.6e-72 275.8 215 58.1
SEGI_36348 Sequoiadendron giganteum HOM05D005636 ORTHO05D006912 1.3e-71 274.2 234 57.3
AUR62033992 Chenopodium quinoa HOM05D005636 ORTHO05D006912 5.6e-70 268.9 228 54.8
arahy.Tifrunner.gnm1.ann1.LGDT7B Arachis hypogaea HOM05D005636 ORTHO05D006912 9.6e-70 268.1 165 75.2
AUR62027489 Chenopodium quinoa HOM05D005636 ORTHO05D006912 6.2e-69 265.4 228 54.8
Ah.04g158730 Amaranthus hybridus HOM05D005636 ORTHO05D006912 9.0e-68 261.5 215 54.9
SGA_v2.0_scaffold70G23671 Striga asiatica HOM05D005636 ORTHO05D006912 9.0e-68 261.5 365 41.6
Os01g0796500 Oryza sativa ssp. japonica HOM05D005636 ORTHO05D006912 1.7e-66 257.3 221 53.8
AagrBONN_evm.TU.Sc2ySwM_228.4819 Anthoceros agrestis HOM05D005636 ORTHO05D006912 4.9e-66 255.8 223 52.9
Haze_13492 Corylus avellana HOM05D005636 ORTHO05D006912 1.2e-64 251.1 204 63.7
Pp3c4_17380 Physcomitrium patens HOM05D005636 ORTHO05D006912 3.5e-64 249.6 231 50.2
SMO367G0867 Selaginella moellendorffii HOM05D005636 ORTHO05D006912 6.7e-63 245.4 216 54.6
Mapoly0095s0041 Marchantia polymorpha HOM05D005636 ORTHO05D006912 2.8e-61 240.0 224 50.9
MSTRG.14295 Avicennia marina HOM05D005636 ORTHO05D006912 1.4e-60 237.7 151 68.2
HPP92_010206 Vanilla planifolia HOM05D002349 ORTHO05D002464 1.2e-59 234.6 187 59.9
Actinidia32519 Actinidia chinensis HOM05D005636 ORTHO05D006912 1.9e-57 227.3 246 52.4
CANSAT64G2722 Cannabis sativa HOM05D005636 ORTHO05D006912 5.5e-57 225.7 155 71.0
CBR_g66789 Chara braunii HOM05D005636 ORTHO05D006912 5.9e-51 205.7 182 52.2
Lj1A625T29 Lonicera japonica HOM05D005636 ORTHO05D006912 1.9e-49 200.7 153 60.1
Cre04.g219900 Chlamydomonas reinhardtii HOM05D005636 ORTHO05D006912 5.5e-49 199.1 204 47.1
DCAR_009796 Daucus carota HOM05D005636 ORTHO05D006912 1.5e-38 164.5 234 38.0
MCO16G670 Micromonas commoda HOM05D005636 ORTHO05D006912 2.6e-35 153.7 164 43.9
PRCOL_00003225 Prasinoderma coloniale HOM05D005636 ORTHO05D006912 4.5e-35 152.9 237 37.6
RcHm_v2.0_Chr2g0151251 Rosa chinensis HOM05D005636 ORTHO05D006912 2.2e-34 150.6 99 73.7
AagrBONN_evm.TU.Sc2ySwM_344.2384 Anthoceros agrestis HOM05D005636 ORTHO05D006912 3.9e-31 139.8 119 52.1
Zm00001eb150880 Zea mays HOM05D005636 ORTHO05D006912 5.5e-25 119.4 112 47.3
CAN.G44.13 Capsicum annuum HOM05D005636 ORTHO05D006912 5.7e-22 109.4 68 76.5
AagrBONN_evm.TU.Sc2ySwM_344.2381 Anthoceros agrestis HOM05D005636 ORTHO05D006912 4.8e-21 106.3 82 57.3
A04p02350 Brassica napus HOM05D005636 ORTHO05D006912 5.0e-18 96.3 58 87.9
CAN.G1530.4 Capsicum annuum HOM05D005636 ORTHO05D017742 5.5e-17 92.8 58 74.1
VMungo0720G3119 Vigna mungo HOM05D000196 ORTHO05D001288 3.6e-08 63.5 38 78.9
Cfa023890 Carpinus fangiana HOM05D005636 ORTHO05D123467 8.9e-07 58.9 72 43.1


User provided reference genes

Program Settings