Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G56990 Arabidopsis thaliana HOM05D003729 ORTHO05D004384 0.0e+00 1095.5 549 100.0
AL5G38440 Arabidopsis lyrata HOM05D003729 ORTHO05D004384 7.1e-269 930.2 511 91.0
Carub.0005s2373 Capsella rubella HOM05D003729 ORTHO05D004384 6.6e-267 923.7 513 89.9
CARHR167140 Cardamine hirsuta HOM05D003729 ORTHO05D004384 1.5e-263 912.5 512 89.5
Sp5g05590 Schrenkiella parvula HOM05D003729 ORTHO05D004384 2.1e-257 892.1 512 87.1
Thhalv10005807m.g Eutrema salsugineum HOM05D003729 ORTHO05D004384 4.0e-256 887.9 512 86.7
C08p32320 Brassica napus HOM05D003729 ORTHO05D004384 1.0e-251 873.2 512 85.0
BcaC07g40019 Brassica carinata HOM05D003729 ORTHO05D004384 5.1e-251 870.9 512 84.6
BolC8t50846H Brassica oleracea HOM05D003729 ORTHO05D004384 1.5e-250 869.4 512 84.4
A09p49920 Brassica napus HOM05D003729 ORTHO05D004384 4.3e-250 867.8 512 84.6
Aa31LG10G11890 Aethionema arabicum HOM05D003729 ORTHO05D004384 5.6e-250 867.5 511 83.8
BraA09t40443Z Brassica rapa HOM05D003729 ORTHO05D004384 2.1e-249 865.5 512 84.4
THA.LOC104802558 Tarenaya hassleriana HOM05D003729 ORTHO05D004384 1.7e-246 855.9 512 82.4
BcaC08g44817 Brassica carinata HOM05D003729 ORTHO05D004384 8.4e-246 853.6 518 82.6
BolC6t37563H Brassica oleracea HOM05D003729 ORTHO05D004384 2.4e-245 852.0 518 82.6
A07p23200 Brassica napus HOM05D003729 ORTHO05D004384 1.0e-243 846.7 518 82.8
BraA07t29984Z Brassica rapa HOM05D003729 ORTHO05D004384 1.0e-243 846.7 518 82.8
C06p24040 Brassica napus HOM05D003729 ORTHO05D004384 4.9e-238 827.8 543 78.1
BcaC07g40088 Brassica carinata HOM05D003729 ORTHO05D004384 8.2e-225 783.9 512 77.7
CiPaw.09G047000 Carya illinoinensis HOM05D003729 ORTHO05D004384 9.4e-213 743.8 512 73.4
COL.COLO4_31341 Corchorus olitorius HOM05D003729 ORTHO05D004384 2.0e-210 736.1 513 71.2
Actinidia38159 Actinidia chinensis HOM05D003729 ORTHO05D004384 2.6e-210 735.7 511 73.0
Manes.15G116200 Manihot esculenta HOM05D003729 ORTHO05D004384 1.3e-209 733.4 512 72.3
Gohir.D11G323300 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.7e-209 731.9 514 70.6
Gorai.007G353300 Gossypium raimondii HOM05D003729 ORTHO05D004384 3.7e-209 731.9 514 70.6
Sc13g0001200 Simmondsia chinensis HOM05D003729 ORTHO05D004384 3.7e-209 731.9 513 71.5
QL06p031735 Quercus lobata HOM05D003729 ORTHO05D004384 1.1e-208 730.3 512 71.3
GSVIVG01033615001 Vitis vinifera HOM05D003729 ORTHO05D004384 1.4e-208 729.9 511 72.4
Duzib106G1244 Durio zibethinus HOM05D003729 ORTHO05D004384 1.6e-207 726.5 513 70.0
Gohir.A11G307900 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.0e-207 726.1 514 70.2
RcHm_v2.0_Chr6g0270881 Rosa chinensis HOM05D003729 ORTHO05D004384 7.7e-207 724.2 513 70.8
EL10Ac3g07219 Beta vulgaris HOM05D003729 ORTHO05D004384 3.8e-206 721.8 512 71.5
FvH4_2g11640 Fragaria vesca HOM05D003729 ORTHO05D004384 3.8e-206 721.8 512 70.1
HanXRQChr10g0311271 Helianthus annuus HOM05D003729 ORTHO05D004384 8.5e-206 720.7 507 71.0
Ciclev10027979m.g Citrus clementina HOM05D003729 ORTHO05D004384 1.5e-205 719.9 507 70.0
Cc06_g19080 Coffea canephora HOM05D003729 ORTHO05D004384 1.5e-205 719.9 531 69.9
Atru.chr11.1446 Acer truncatum HOM05D003729 ORTHO05D004384 3.2e-205 718.8 508 71.7
Atru.chr11.1476 Acer truncatum HOM05D003729 ORTHO05D004384 3.2e-205 718.8 508 71.7
Eucgr.B01227 Eucalyptus grandis HOM05D003729 ORTHO05D004384 7.2e-205 717.6 512 71.7
HanXRQChr12g0359771 Helianthus annuus HOM05D003729 ORTHO05D004384 2.1e-204 716.1 511 70.6
Aqoxy3G00221 Aquilegia oxysepala HOM05D003729 ORTHO05D004384 3.6e-204 715.3 510 69.0
Prupe.5G014500 Prunus persica HOM05D003729 ORTHO05D004384 3.6e-204 715.3 507 70.6
Dinv34365 Davidia involucrata HOM05D003729 ORTHO05D004384 1.4e-203 713.4 526 70.2
Dinv26813 Davidia involucrata HOM05D003729 ORTHO05D004384 1.8e-203 713.0 525 70.1
Sopen10g034990 Solanum pennellii HOM05D003729 ORTHO05D004384 3.0e-203 712.2 511 70.8
Hma1.2p1_0402F.1_g145090 Hydrangea macrophylla HOM05D003729 ORTHO05D004384 4.0e-203 711.8 511 71.2
Peaxi162Scf00146g00613 Petunia axillaris HOM05D003729 ORTHO05D004384 4.0e-203 711.8 511 69.9
DCAR_013638 Daucus carota HOM05D003729 ORTHO05D004384 5.2e-203 711.4 509 69.5
CSS0000349 Camellia sinensis var. sinensis HOM05D003729 ORTHO05D004384 1.2e-202 710.3 511 70.5
ClCG09G015010 Citrullus lanatus HOM05D003729 ORTHO05D004384 1.2e-202 710.3 512 69.3
CAN.G1099.5 Capsicum annuum HOM05D003729 ORTHO05D004384 1.5e-202 709.9 511 70.5
TAR629G1039 Trochodendron aralioides HOM05D003729 ORTHO05D004384 2.6e-202 709.1 514 70.2
Prupe.8G004300 Prunus persica HOM05D003729 ORTHO05D004384 3.3e-202 708.8 508 70.7
Migut.N03364 Erythranthe guttata HOM05D003729 ORTHO05D004384 4.4e-202 708.4 516 69.6
Nitab4.5_0005447g0050 Nicotiana tabacum HOM05D003729 ORTHO05D004384 4.8e-201 704.9 511 71.0
Rhsim04G0111000 Rhododendron simsii HOM05D003729 ORTHO05D004384 2.4e-200 702.6 511 69.3
AUR62023904 Chenopodium quinoa HOM05D003729 ORTHO05D004384 4.1e-200 701.8 512 69.5
unitig_27.g24938 Utricularia gibba HOM05D003729 ORTHO05D004384 5.3e-200 701.4 512 67.0
Ah.04g151040 Amaranthus hybridus HOM05D003729 ORTHO05D004384 7.0e-200 701.0 512 68.8
Nn7g37723 Nelumbo nucifera HOM05D003729 ORTHO05D004384 1.2e-199 700.3 511 69.5
Lsat_1_v5_gn_5_75341 Lactuca sativa HOM05D003729 ORTHO05D004384 1.6e-199 699.9 520 69.2
ECA234G1736 Erigeron canadensis HOM05D003729 ORTHO05D004384 7.7e-199 697.6 491 70.5
ATR0757G154 Amborella trichopoda HOM05D003729 ORTHO05D004384 8.5e-198 694.1 510 66.5
CsaV3_7G006250 Cucumis sativus L. HOM05D003729 ORTHO05D004384 1.9e-197 693.0 512 67.6
Potri.016G037400 Populus trichocarpa HOM05D003729 ORTHO05D004384 5.5e-197 691.4 511 68.7
arahy.Tifrunner.gnm1.ann1.UC9EW5 Arachis hypogaea HOM05D003729 ORTHO05D004384 9.4e-197 690.6 505 68.3
PGR031G2313 Punica granatum HOM05D003729 ORTHO05D004384 1.2e-196 690.3 466 72.5
Psat5g246840 Pisum sativum HOM05D003729 ORTHO05D004384 2.1e-196 689.5 504 67.3
MD06G1011700 Malus domestica HOM05D003729 ORTHO05D004384 4.7e-196 688.3 447 75.6
Ca_11233_v3 Cicer arietinum L. HOM05D003729 ORTHO05D004384 1.4e-195 686.8 505 67.5
Cfa020012 Carpinus fangiana HOM05D003729 ORTHO05D004384 3.0e-195 685.6 470 71.5
HPP92_002023 Vanilla planifolia HOM05D003729 ORTHO05D004384 3.0e-195 685.6 511 65.8
Lalb_Chr06g0173631 Lupinus albus HOM05D003729 ORTHO05D004384 5.2e-195 684.9 504 67.3
AUR62003735 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.5e-194 683.3 571 63.2
PSO478G2512 Papaver somniferum HOM05D003729 ORTHO05D004384 2.0e-194 682.9 512 67.8
Phvul.004G146700 Phaseolus vulgaris HOM05D003729 ORTHO05D004384 3.4e-194 682.2 502 67.1
SGA_v2.0_scaffold149G36565 Striga asiatica HOM05D003729 ORTHO05D004384 4.4e-194 681.8 510 67.3
Glyma.09G171000 Glycine max HOM05D003729 ORTHO05D004384 7.5e-194 681.0 508 66.9
PSO782G2431 Papaver somniferum HOM05D003729 ORTHO05D004384 9.8e-194 680.6 512 67.8
VMungo0464G0714 Vigna mungo HOM05D003729 ORTHO05D004384 1.3e-193 680.2 502 67.1
vmacro09025 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.8e-192 676.4 560 63.4
Glyma.07G106900 Glycine max HOM05D003729 ORTHO05D004384 3.1e-192 675.6 508 66.7
Sabra16G0044200 Salix brachista HOM05D003729 ORTHO05D004384 7.0e-192 674.5 545 64.2
Sabra16G0039300 Salix brachista HOM05D003729 ORTHO05D004384 1.2e-191 673.7 545 64.2
Sed0006249 Sechium edule HOM05D003729 ORTHO05D004384 2.7e-191 672.5 512 65.6
Lj6g0002169 Lotus japonicus HOM05D003729 ORTHO05D004384 3.5e-191 672.2 509 65.8
Medtr2g081080 Medicago truncatula HOM05D003729 ORTHO05D004384 3.5e-191 672.2 505 67.1
MSTRG.19814 Avicennia marina HOM05D003729 ORTHO05D004384 1.6e-188 663.3 471 69.9
MBI04_g42401_MAGBIO Magnolia biondii HOM05D003729 ORTHO05D004384 6.1e-188 661.4 511 65.6
Thecc.05G137800 Theobroma cacao HOM05D003729 ORTHO05D004384 5.2e-187 658.3 513 65.3
CANSAT64G1452 Cannabis sativa HOM05D003729 ORTHO05D004384 1.2e-180 637.1 511 62.0
Lj1g0021267 Lotus japonicus HOM05D003729 ORTHO05D004384 1.2e-180 637.1 509 63.9
BcaB02g07627 Brassica carinata HOM05D003729 ORTHO05D004384 5.2e-179 631.7 519 68.0
Zm00001eb373800 Zea mays HOM05D003729 ORTHO05D004384 1.2e-178 630.6 504 61.3
Pp3c18_60 Physcomitrium patens HOM05D003729 ORTHO05D004384 3.4e-170 602.4 503 57.3
Mapoly0009s0077 Marchantia polymorpha HOM05D003729 ORTHO05D004384 7.8e-167 591.3 505 55.2
SMO334G0073 Selaginella moellendorffii HOM05D003729 ORTHO05D004384 1.3e-166 590.5 505 56.8
Lj1A1094G13 Lonicera japonica HOM05D003729 ORTHO05D004384 3.9e-166 589.0 433 68.1
Os06g0128400 Oryza sativa ssp. japonica HOM05D003729 ORTHO05D004384 6.6e-166 588.2 414 66.7
FAN24G0230 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.9e-160 570.1 512 59.2
AagrBONN_evm.TU.Sc2ySwM_228.5647 Anthoceros agrestis HOM05D003729 ORTHO05D004384 9.2e-160 567.8 506 55.9
Nitab4.5_0000381g0340 Nicotiana tabacum HOM05D003729 ORTHO05D004384 3.5e-159 565.8 838 42.8
TPR.G32867 Trifolium pratense HOM05D003729 ORTHO05D004384 4.0e-147 525.8 655 46.4
CBR_g12410 Chara braunii HOM05D003729 ORTHO05D004384 5.3e-139 498.8 510 49.0
MELO3C018665.2 Cucumis melo HOM05D003729 ORTHO05D004384 1.9e-136 490.3 512 52.5
arahy.Tifrunner.gnm1.ann1.HP2N24 Arachis hypogaea HOM05D003729 ORTHO05D004384 3.2e-136 489.6 370 67.0
FAN15G2573 Fragaria x ananassa HOM05D003729 ORTHO05D004384 1.0e-134 484.6 512 53.1
Cre03.g159950 Chlamydomonas reinhardtii HOM05D003729 ORTHO05D004384 2.1e-127 460.3 466 47.6
AUR62016564 Chenopodium quinoa HOM05D003729 ORTHO05D004384 1.8e-123 447.2 417 58.5
MCO06G073 Micromonas commoda HOM05D003729 ORTHO05D004384 4.0e-123 446.0 513 44.4
Zm00001eb378550 Zea mays HOM05D003729 ORTHO05D004384 2.5e-117 426.8 366 57.9
PRCOL_00000752 Prasinoderma coloniale HOM05D003729 ORTHO05D004384 1.0e-110 404.8 529 41.0
Thecc.05G137400 Theobroma cacao HOM05D003729 ORTHO05D004384 7.4e-109 398.7 434 49.5
Thecc.05G137700 Theobroma cacao HOM05D003729 ORTHO05D004384 2.0e-90 337.4 299 59.9
SHI40172 Sapria himalayana HOM05D003729 ORTHO05D004384 2.6e-85 320.5 378 50.0
SEGI_15849 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 1.5e-80 304.7 260 58.5
Cfa025239 Carpinus fangiana HOM05D003729 ORTHO05D004384 7.5e-77 292.4 531 35.0
SHI43747 Sapria himalayana HOM05D003729 ORTHO05D004384 2.2e-76 290.8 305 52.8
vmacro10990 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 4.5e-74 283.1 266 56.8
Rhsim06G0100100 Rhododendron simsii HOM05D003729 ORTHO05D004384 1.9e-72 277.7 219 65.8
Cpa.g.sc5.183 Carica papaya HOM05D003729 ORTHO05D004384 2.5e-72 277.3 255 60.0
Atru.chr1.117 Acer truncatum HOM05D003729 ORTHO05D004384 1.5e-69 268.1 168 76.2
SHI42965 Sapria himalayana HOM05D003729 ORTHO05D004384 4.4e-69 266.5 341 46.9
Cpa.g.sc1212.1 Carica papaya HOM05D003729 ORTHO05D004384 1.6e-63 248.1 140 84.3
SHI45339 Sapria himalayana HOM05D003729 ORTHO05D004384 1.9e-59 234.6 238 53.4
SHI46975 Sapria himalayana HOM05D003729 ORTHO05D004384 4.4e-53 213.4 204 54.9
vmacro10989 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 8.3e-52 209.1 262 46.6
Thecc.05G138100 Theobroma cacao HOM05D003729 ORTHO05D004384 1.3e-49 201.8 130 74.6
HanXRQChr09g0238921 Helianthus annuus HOM05D003729 ORTHO05D004384 5.4e-43 179.9 107 74.8
Oeu059338.2 Olea europaea HOM05D003729 ORTHO05D004384 5.4e-43 179.9 204 53.4
SEGI_35907 Sequoiadendron giganteum HOM05D003729 ORTHO05D004384 3.0e-41 174.1 117 70.1
Haze_16233 Corylus avellana HOM05D003729 ORTHO05D004384 1.2e-34 152.1 119 64.7
Haze_20209 Corylus avellana HOM05D003729 ORTHO05D004384 2.7e-34 151.0 102 73.5
QL07p009838 Quercus lobata HOM05D003729 ORTHO05D004384 2.7e-34 151.0 119 63.0
SHI44105 Sapria himalayana HOM05D003729 ORTHO05D004384 4.6e-34 150.2 107 66.4
Haze_20213 Corylus avellana HOM05D003729 ORTHO05D004384 7.8e-34 149.4 102 72.5
arahy.Tifrunner.gnm1.ann1.7FD8QN Arachis hypogaea HOM05D003729 ORTHO05D004384 1.5e-32 145.2 207 44.4
Haze_16231 Corylus avellana HOM05D003729 ORTHO05D004384 1.6e-31 141.7 174 46.0
SHI49287 Sapria himalayana HOM05D003729 ORTHO05D004384 2.1e-31 141.4 118 59.3
Gohir.A07G111501 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.1e-30 137.5 86 75.6
Gohir.D02G195125 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.1e-30 137.5 86 75.6
Gohir.D06G065600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 3.1e-30 137.5 86 75.6
AUR62022314 Chenopodium quinoa HOM05D000534 ORTHO05D000389 4.0e-30 137.1 149 49.7
Gohir.D05G190600 Gossypium hirsutum HOM05D003729 ORTHO05D004384 2.6e-29 134.4 85 74.1
Haze_16230 Corylus avellana HOM05D003729 ORTHO05D004384 7.6e-29 132.9 79 79.7
Glyma.03G135700 Glycine max HOM05D003729 ORTHO05D004384 6.4e-28 129.8 207 38.2
Zm00001eb034510 Zea mays HOM05D003729 ORTHO05D004384 8.4e-28 129.4 106 60.4
Gorai.004G004200 Gossypium raimondii HOM05D003729 ORTHO05D004384 1.9e-27 128.3 102 63.7
vmacro12362 Vaccinium macrocarpon HOM05D003729 ORTHO05D004384 1.2e-26 125.6 79 73.4
SHI46293 Sapria himalayana HOM05D003729 ORTHO05D004384 1.7e-25 121.7 70 78.6
SHI45328 Sapria himalayana HOM05D003729 ORTHO05D004384 3.6e-23 114.0 72 69.4
Haze_16235 Corylus avellana HOM05D003729 ORTHO05D004384 1.1e-19 102.4 106 51.9
SHI38377 Sapria himalayana HOM05D003729 ORTHO05D004384 1.4e-19 102.1 62 74.2
SHI53576 Sapria himalayana HOM05D003729 ORTHO05D004384 7.1e-19 99.8 62 74.2
SHI50183 Sapria himalayana HOM05D003729 ORTHO05D004384 9.3e-19 99.4 98 54.1
Zm00001eb284510 Zea mays HOM05D001162 ORTHO05D001218 2.1e-18 98.2 56 76.8
Zm00001eb077600 Zea mays HOM05D001162 ORTHO05D029047 4.6e-18 97.1 55 76.4
Zm00001eb173210 Zea mays HOM05D001162 ORTHO05D001218 4.6e-18 97.1 56 75.0
Cpa.g.sc5.181 Carica papaya HOM05D003729 ORTHO05D004384 7.9e-18 96.3 56 76.8
Sabra16G0029600 Salix brachista HOM05D000075 ORTHO05D000073 2.3e-17 94.7 88 60.2
SHI46294 Sapria himalayana HOM05D003729 ORTHO05D004384 2.3e-17 94.7 63 68.3
FvH4_3g33711 Fragaria vesca HOM05D003729 ORTHO05D001837 5.6e-16 90.1 138 40.6
SHI49946 Sapria himalayana HOM05D003729 ORTHO05D004384 7.4e-16 89.7 126 43.7
Haze_20208 Corylus avellana HOM05D003729 ORTHO05D004384 6.9e-14 83.2 55 65.5
Sabra16G0039200 Salix brachista HOM05D002722 ORTHO05D003076 6.9e-14 83.2 77 57.1
Sabra16G0022500 Salix brachista HOM05D000075 ORTHO05D000073 1.5e-13 82.0 51 78.4
QL01p046327 Quercus lobata HOM05D003729 ORTHO05D004384 2.0e-13 81.6 53 71.7
QL93p0119_0007 Quercus lobata HOM05D003729 ORTHO05D004384 2.0e-13 81.6 53 71.7
SHI48245 Sapria himalayana HOM05D003729 ORTHO05D004384 2.6e-13 81.3 62 64.5
SHI45329 Sapria himalayana HOM05D003729 ORTHO05D004384 4.5e-13 80.5 46 80.4
Lj1A1094G14 Lonicera japonica HOM05D003729 ORTHO05D004384 1.3e-12 79.0 94 47.9
Sabra16G0044400 Salix brachista HOM05D002722 ORTHO05D003076 9.3e-11 72.8 77 51.9
Medtr8g007595 Medicago truncatula HOM05D003729 ORTHO05D004384 2.1e-10 71.6 46 69.6
SHI48244 Sapria himalayana HOM05D003729 ORTHO05D004384 5.7e-08 63.5 59 55.9
Sabra06G0025400 Salix brachista HOM05D003729 ORTHO05D004384 7.4e-08 63.2 44 65.9
Haze_16229 Corylus avellana HOM05D003729 ORTHO05D004384 2.8e-07 61.2 51 60.8
Haze_20210 Corylus avellana HOM05D003729 ORTHO05D004384 2.8e-07 61.2 51 60.8
Haze_20214 Corylus avellana HOM05D003729 ORTHO05D004384 2.8e-07 61.2 51 60.8
SHI54010 Sapria himalayana HOM05D003729 ORTHO05D004384 2.4e-06 58.2 35 74.3
Medtr8g007590 Medicago truncatula HOM05D003729 ORTHO05D004384 5.3e-06 57.0 36 66.7


User provided reference genes

Program Settings