Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G56730 Arabidopsis thaliana HOM05D011241 ORTHO05D018423 1.0e-96 356.7 173 100.0
CARHR159530 Cardamine hirsuta HOM05D011241 ORTHO05D018423 2.8e-22 109.4 120 52.5
AL5G24040 Arabidopsis lyrata HOM05D011241 ORTHO05D018423 3.7e-22 109.0 172 39.0
CARHR288870 Cardamine hirsuta HOM05D011241 ORTHO05D018423 1.4e-21 107.1 160 41.2
AT3G62050 Arabidopsis thaliana HOM05D001456 ORTHO05D012062 2.2e-14 83.2 121 38.0
BcaB04g20527 Brassica carinata HOM05D011241 ORTHO05D016779 1.1e-13 80.9 154 33.1
Thhalv10027969m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 4.1e-13 79.0 103 36.9
CARHR167440 Cardamine hirsuta HOM05D001456 ORTHO05D031422 1.6e-12 77.0 138 37.7
BraA01t03466Z Brassica rapa HOM05D011241 ORTHO05D016779 1.7e-11 73.6 152 31.6
BcaC02g10275 Brassica carinata HOM05D001456 ORTHO05D012062 2.2e-11 73.2 121 33.1
C04p30870 Brassica napus HOM05D001456 ORTHO05D012062 2.2e-11 73.2 121 33.1
BolC4t24609H Brassica oleracea HOM05D001456 ORTHO05D012062 2.2e-11 73.2 109 33.9
VMungo1383G0246 Vigna mungo HOM05D001456 ORTHO05D002799 2.9e-11 72.8 146 30.1
C01p42830 Brassica napus HOM05D011241 ORTHO05D016779 3.8e-11 72.4 152 31.6
Carub.0005s1718 Capsella rubella HOM05D001456 ORTHO05D011781 5.0e-11 72.0 164 33.5
Actinidia21350 Actinidia chinensis HOM05D001456 ORTHO05D002799 6.5e-11 71.6 107 33.6
BcaC09g49080 Brassica carinata HOM05D011241 ORTHO05D016779 6.5e-11 71.6 152 31.6
A01p33450 Brassica napus HOM05D011241 ORTHO05D016779 6.5e-11 71.6 152 31.6
A01p33500 Brassica napus HOM05D011241 ORTHO05D016779 6.5e-11 71.6 152 30.9
BolC1t04230H Brassica oleracea HOM05D011241 ORTHO05D016779 6.5e-11 71.6 152 31.6
Glyma.03G228500 Glycine max HOM05D001456 ORTHO05D002799 6.5e-11 71.6 141 31.2
AL5G44650 Arabidopsis lyrata HOM05D001456 ORTHO05D012062 8.5e-11 71.2 121 33.9
A03p46830 Brassica napus HOM05D001456 ORTHO05D014991 8.5e-11 71.2 119 30.3
BolC7t45011H Brassica oleracea HOM05D001456 ORTHO05D014991 8.5e-11 71.2 119 30.3
TPR.G1642 Trifolium pratense HOM05D001456 ORTHO05D002799 8.5e-11 71.2 146 29.5
BcaB04g20589 Brassica carinata HOM05D011241 ORTHO05D016779 1.1e-10 70.9 147 32.7
BcaC06g33215 Brassica carinata HOM05D001456 ORTHO05D014991 1.1e-10 70.9 119 30.3
C07p44880 Brassica napus HOM05D001456 ORTHO05D014991 1.1e-10 70.9 119 30.3
Nitab4.5_0007320g0020 Nicotiana tabacum HOM05D001456 ORTHO05D002799 1.1e-10 70.9 107 33.6
Peaxi162Scf00357g00114 Petunia axillaris HOM05D001456 ORTHO05D002799 1.1e-10 70.9 145 30.3
A03p46820 Brassica napus HOM05D001456 ORTHO05D014991 1.5e-10 70.5 119 30.3
C07p44870 Brassica napus HOM05D001456 ORTHO05D014991 1.5e-10 70.5 107 32.7
Thhalv10022386m.g Eutrema salsugineum HOM05D011241 ORTHO05D018423 1.5e-10 70.5 114 36.8
Cc02_g35790 Coffea canephora HOM05D001456 ORTHO05D002799 1.9e-10 70.1 141 30.5
Nitab4.5_0002485g0050 Nicotiana tabacum HOM05D001456 ORTHO05D002799 1.9e-10 70.1 145 29.7
Glyma.10G143900 Glycine max HOM05D001456 ORTHO05D002799 2.5e-10 69.7 141 29.8
Sopen01g044590 Solanum pennellii HOM05D001456 ORTHO05D002799 2.5e-10 69.7 141 29.8
PGSC0003DMG400018288 Solanum tuberosum HOM05D001456 ORTHO05D002799 2.5e-10 69.7 141 29.8
arahy.Tifrunner.gnm1.ann1.95CVAH Arachis hypogaea HOM05D001456 ORTHO05D002799 3.2e-10 69.3 146 28.8
arahy.Tifrunner.gnm1.ann1.XUXX3P Arachis hypogaea HOM05D001456 ORTHO05D002799 3.2e-10 69.3 146 28.8
SEGI_20611 Sequoiadendron giganteum HOM05D001456 ORTHO05D004886 4.2e-10 68.9 107 32.7
CARHR265790 Cardamine hirsuta HOM05D001456 ORTHO05D018423 5.5e-10 68.6 117 32.5
Solyc01g101140.4 Solanum lycopersicum HOM05D001456 ORTHO05D002799 5.5e-10 68.6 141 29.8
Thhalv10003670m.g Eutrema salsugineum HOM05D001456 ORTHO05D014991 7.2e-10 68.2 112 29.5
CDE09G1275 Ceratophyllum demersum HOM05D001456 ORTHO05D002799 9.4e-10 67.8 151 29.1
Thhalv10006264m.g Eutrema salsugineum HOM05D001456 ORTHO05D011781 9.4e-10 67.8 105 35.2
MSTRG.16424 Avicennia marina HOM05D001456 ORTHO05D002799 1.2e-09 67.4 141 29.8
BcaC06g33174 Brassica carinata HOM05D001456 ORTHO05D014991 1.2e-09 67.4 108 32.4
CSS0013085 Camellia sinensis var. sinensis HOM05D001456 ORTHO05D002799 1.2e-09 67.4 137 30.7
Glyma.19G225800 Glycine max HOM05D001456 ORTHO05D002799 1.2e-09 67.4 146 28.8
Lalb_Chr06g0167321 Lupinus albus HOM05D001456 ORTHO05D002799 1.2e-09 67.4 146 28.1
Ca_09277_v3 Cicer arietinum L. HOM05D001456 ORTHO05D002799 1.6e-09 67.0 146 28.8
Nitab4.5_0005904g0040 Nicotiana tabacum HOM05D001456 ORTHO05D002799 1.6e-09 67.0 145 29.0
VMungo0720G0252 Vigna mungo HOM05D001456 ORTHO05D002799 1.6e-09 67.0 137 30.7
Eucgr.H01318 Eucalyptus grandis HOM05D001456 ORTHO05D002799 2.1e-09 66.6 141 29.8
PGR031G1658 Punica granatum HOM05D001456 ORTHO05D002799 2.1e-09 66.6 141 29.8
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 2.7e-09 66.2 141 29.1
AT3G62200 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 3.6e-09 65.9 141 31.2
BraA09t40823Z Brassica rapa HOM05D010352 ORTHO05D012062 3.6e-09 65.9 110 29.1
ECA236G0747 Erigeron canadensis HOM05D001456 ORTHO05D002799 3.6e-09 65.9 103 33.0
Medtr7g111570 Medicago truncatula HOM05D001456 ORTHO05D002799 3.6e-09 65.9 146 28.1
SEGI_28425 Sequoiadendron giganteum HOM05D001456 ORTHO05D002799 3.6e-09 65.9 107 35.5
THA.LOC104817439 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 3.6e-09 65.9 107 31.8
A04p04180 Brassica napus HOM05D010965 ORTHO05D024278 4.7e-09 65.5 105 30.5
A09p52590 Brassica napus HOM05D001456 ORTHO05D011781 4.7e-09 65.5 85 31.8
BraA04t16134Z Brassica rapa HOM05D010965 ORTHO05D024278 4.7e-09 65.5 105 30.5
PGR031G3055 Punica granatum HOM05D001456 ORTHO05D002799 4.7e-09 65.5 141 29.1
C08p35340 Brassica napus HOM05D001456 ORTHO05D011781 6.1e-09 65.1 85 31.8
CARHR281370 Cardamine hirsuta HOM05D011241 ORTHO05D021385 6.1e-09 65.1 129 33.3
Oeu036643.2 Olea europaea HOM05D001456 ORTHO05D002799 6.1e-09 65.1 141 29.1
Psat3g014920 Pisum sativum HOM05D001456 ORTHO05D002799 6.1e-09 65.1 141 28.4
Aa31LG11G2160 Aethionema arabicum HOM05D001456 ORTHO05D002799 8.0e-09 64.7 141 27.7
AL5G44950 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 8.0e-09 64.7 141 29.8
AT3G62210 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 8.0e-09 64.7 133 30.8
BolC8t51127H Brassica oleracea HOM05D001456 ORTHO05D011781 8.0e-09 64.7 83 32.5
BraA02t09090Z Brassica rapa HOM05D001456 ORTHO05D014991 8.0e-09 64.7 108 31.5
Phvul.001G222300 Phaseolus vulgaris HOM05D001456 ORTHO05D002799 8.0e-09 64.7 147 28.6
Actinidia01663 Actinidia chinensis HOM05D001456 ORTHO05D002799 1.0e-08 64.3 138 30.4
BraA09t40689Z Brassica rapa HOM05D001456 ORTHO05D011781 1.0e-08 64.3 85 30.6
Carub.0005s2893 Capsella rubella HOM05D001456 ORTHO05D002799 1.0e-08 64.3 141 31.2
BcaC07g40423 Brassica carinata HOM05D016731 ORTHO05D011781 1.4e-08 63.9 108 34.3
A09p52600 Brassica napus HOM05D016731 ORTHO05D011781 1.4e-08 63.9 114 37.7
C02p61420 Brassica napus HOM05D001456 ORTHO05D014991 1.4e-08 63.9 104 32.7
BolC2t12194H Brassica oleracea HOM05D001456 ORTHO05D014991 1.4e-08 63.9 108 31.5
Thhalv10005803m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 1.4e-08 63.9 141 27.7
Lj1g0004173 Lotus japonicus HOM05D001456 ORTHO05D002799 1.4e-08 63.9 141 29.1
A02p41490 Brassica napus HOM05D001456 ORTHO05D014991 1.8e-08 63.5 108 30.6
BcaC07g40712 Brassica carinata HOM05D001456 ORTHO05D002799 2.3e-08 63.2 141 27.7
A09p54270 Brassica napus HOM05D001456 ORTHO05D002799 2.3e-08 63.2 141 27.7
C08p37150 Brassica napus HOM05D001456 ORTHO05D002799 2.3e-08 63.2 141 27.7
BolC8t51292H Brassica oleracea HOM05D001456 ORTHO05D002799 2.3e-08 63.2 141 27.7
BraA09t40839Z Brassica rapa HOM05D001456 ORTHO05D002799 2.3e-08 63.2 141 27.7
CARHR172540 Cardamine hirsuta HOM05D001456 ORTHO05D002799 2.3e-08 63.2 141 29.1
Oeu000099.1 Olea europaea HOM05D001456 ORTHO05D002799 2.3e-08 63.2 141 27.7
QL03p010255 Quercus lobata HOM05D001456 ORTHO05D002799 2.3e-08 63.2 138 29.0
QL03p010491 Quercus lobata HOM05D001456 ORTHO05D002799 2.3e-08 63.2 138 29.0
Sp5g01180 Schrenkiella parvula HOM05D001456 ORTHO05D002799 2.3e-08 63.2 141 27.7
THA.LOC104818337 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.3e-08 63.2 141 27.0
AT5G64590 Arabidopsis thaliana HOM05D001456 ORTHO05D081537 3.0e-08 62.8 161 31.1
Lalb_Chr02g0147591 Lupinus albus HOM05D001456 ORTHO05D002799 3.0e-08 62.8 146 27.4
PGR031G1599 Punica granatum HOM05D001456 ORTHO05D002799 3.0e-08 62.8 141 28.4
PGR031G3460 Punica granatum HOM05D001456 ORTHO05D002799 3.0e-08 62.8 141 28.4
THA.LOC104802123 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 3.0e-08 62.8 141 27.7
MSTRG.20358 Avicennia marina HOM05D001456 ORTHO05D002799 5.2e-08 62.0 141 29.1
C04p40370 Brassica napus HOM05D021081 ORTHO05D002799 5.2e-08 62.0 152 29.6
AUR62030141 Chenopodium quinoa HOM05D001456 ORTHO05D002799 5.2e-08 62.0 121 30.6
Psat3g018040 Pisum sativum HOM05D001456 ORTHO05D002799 6.8e-08 61.6 109 26.6
BcaB02g08142 Brassica carinata HOM05D016723 ORTHO05D092366 8.8e-08 61.2 119 33.6
BraA09t40691Z Brassica rapa HOM05D001456 ORTHO05D011781 8.8e-08 61.2 71 36.6
CARHR167430 Cardamine hirsuta HOM05D016723 ORTHO05D031422 8.8e-08 61.2 115 34.8
BcaC02g09236 Brassica carinata HOM05D021081 ORTHO05D094392 1.2e-07 60.8 125 31.2
A09p52620 Brassica napus HOM05D001456 ORTHO05D011781 1.2e-07 60.8 71 36.6
BraA09t40690Z Brassica rapa HOM05D016731 ORTHO05D011781 1.2e-07 60.8 109 37.6
BcaC02g09238 Brassica carinata HOM05D021081 ORTHO05D018423 1.5e-07 60.5 154 29.2
AT5G61180 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 4.4e-07 58.9 171 25.1
BcaC02g09231 Brassica carinata HOM05D021081 ORTHO05D032035 4.4e-07 58.9 126 31.0
BolC2t08502H Brassica oleracea HOM05D001456 ORTHO05D031454 5.7e-07 58.5 76 35.5
THA.LOC104801327 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 5.7e-07 58.5 107 29.0
AL8G37830 Arabidopsis lyrata HOM05D001456 ORTHO05D002799 9.8e-07 57.8 69 37.7
Carub.0003s2933 Capsella rubella HOM05D003930 ORTHO05D004742 9.8e-07 57.8 125 28.8
ECA234G4616 Erigeron canadensis HOM05D003930 ORTHO05D004742 1.3e-06 57.4 128 27.3
Potri.001G307700 Populus trichocarpa HOM05D004262 ORTHO05D004886 1.3e-06 57.4 131 29.0
Carub.0006s2385 Capsella rubella HOM05D001456 ORTHO05D019698 1.7e-06 57.0 141 32.6
BcaC02g09794 Brassica carinata HOM05D010965 ORTHO05D024278 2.2e-06 56.6 81 34.6
C04p36520 Brassica napus HOM05D010965 ORTHO05D024278 2.2e-06 56.6 81 34.6
BolC4t25144H Brassica oleracea HOM05D010965 ORTHO05D024278 2.2e-06 56.6 81 34.6
Migut.K01357 Erythranthe guttata HOM05D001456 ORTHO05D002799 2.2e-06 56.6 110 32.7
Sabra16G0193600 Salix brachista HOM05D004262 ORTHO05D004886 2.2e-06 56.6 117 29.9
AT2G15560 Arabidopsis thaliana HOM05D003930 ORTHO05D004742 3.7e-06 55.8 124 27.4
AL5G20620 Arabidopsis lyrata HOM05D001456 ORTHO05D019698 4.9e-06 55.5 107 30.8
Thhalv10015746m.g Eutrema salsugineum HOM05D001456 ORTHO05D019698 4.9e-06 55.5 51 47.1
Prupe.8G127000 Prunus persica HOM05D003930 ORTHO05D004742 4.9e-06 55.5 114 28.9
A04p01060 Brassica napus HOM05D001456 ORTHO05D033337 6.3e-06 55.1 99 29.3
C04p40290 Brassica napus HOM05D021081 ORTHO05D032035 6.3e-06 55.1 124 29.8
C05p42720 Brassica napus HOM05D001456 ORTHO05D041427 6.3e-06 55.1 51 45.1
BolC4t25609H Brassica oleracea HOM05D021081 ORTHO05D032035 6.3e-06 55.1 124 29.8
BolC5t32995H Brassica oleracea HOM05D001456 ORTHO05D041427 6.3e-06 55.1 51 45.1
Carub.0033s0006 Capsella rubella HOM05D001636 ORTHO05D013186 6.3e-06 55.1 124 29.8
CARHR119130 Cardamine hirsuta HOM05D001456 ORTHO05D011781 6.3e-06 55.1 48 50.0
Oeu013718.1 Olea europaea HOM05D003930 ORTHO05D004742 6.3e-06 55.1 121 27.3
BcaC02g08726 Brassica carinata HOM05D001456 ORTHO05D031976 8.3e-06 54.7 103 32.0
C04p51270 Brassica napus HOM05D001456 ORTHO05D031976 8.3e-06 54.7 103 32.0
BolC4t26717H Brassica oleracea HOM05D001456 ORTHO05D031976 8.3e-06 54.7 103 32.0
Nn3g17394 Nelumbo nucifera HOM05D003930 ORTHO05D004742 8.3e-06 54.7 122 26.2
THA.LOC104819571 Tarenaya hassleriana HOM05D003930 ORTHO05D004742 8.3e-06 54.7 109 27.5


User provided reference genes

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