Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G54980 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 5.0e-237 825.1 621 100.0
AL5G36090 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 2.4e-207 726.5 621 91.9
CARHR164980 Cardamine hirsuta HOM05D006287 ORTHO05D008192 2.9e-184 649.8 621 84.7
Carub.0005s2160 Capsella rubella HOM05D006287 ORTHO05D008192 1.2e-158 564.7 624 78.5
C08p30210 Brassica napus HOM05D006287 ORTHO05D008192 2.3e-149 533.9 627 69.4
BolC8t50627H Brassica oleracea HOM05D006287 ORTHO05D008192 5.1e-149 532.7 625 69.6
BcaNung04649 Brassica carinata HOM05D006287 ORTHO05D008192 3.0e-141 506.9 627 63.5
A09p47970 Brassica napus HOM05D006287 ORTHO05D008192 9.7e-140 501.9 627 71.6
Thhalv10010921m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 5.5e-135 486.1 622 72.2
BraA09t40252Z Brassica rapa HOM05D006287 ORTHO05D008192 3.9e-133 479.9 628 71.5
BcaB01g00140 Brassica carinata HOM05D006287 ORTHO05D008192 6.5e-120 436.0 624 70.2
Sp4g21560 Schrenkiella parvula HOM05D006287 ORTHO05D008192 3.8e-104 383.6 635 64.4
SpUn0018_0110 Schrenkiella parvula HOM05D006287 ORTHO05D008192 3.8e-104 383.6 635 64.4
Aa31sc33G30 Aethionema arabicum HOM05D006287 ORTHO05D008192 5.5e-95 353.2 620 59.7
AT2G39230 Arabidopsis thaliana HOM05D006287 ORTHO05D008192 6.8e-85 319.7 632 60.4
Thhalv10017602m.g Eutrema salsugineum HOM05D006287 ORTHO05D008192 4.0e-77 293.9 627 59.0
Thecc.09G149000 Theobroma cacao HOM05D006287 ORTHO05D008192 8.1e-62 243.0 407 54.8
THA.LOC104824237 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 2.8e-54 218.0 632 52.5
Oeu008766.1 Olea europaea HOM05D006287 ORTHO05D008192 5.2e-53 213.8 454 50.7
BcaNung04644 Brassica carinata HOM05D006287 ORTHO05D008192 4.9e-51 207.2 181 62.4
CiPaw.06G059600 Carya illinoinensis HOM05D006287 ORTHO05D008192 1.1e-50 206.1 350 38.3
CSS0042508 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 1.0e-48 199.5 455 45.7
MSTRG.25851 Avicennia marina HOM05D006287 ORTHO05D008192 7.3e-47 193.4 429 42.9
Sc25g0000480 Simmondsia chinensis HOM05D006287 ORTHO05D008192 4.9e-43 180.6 601 52.7
SGA_v2.0_scaffold22G09931 Striga asiatica HOM05D006287 ORTHO05D008192 2.1e-41 175.3 482 41.5
Ciclev10010816m.g Citrus clementina HOM05D006287 ORTHO05D008192 2.3e-40 171.8 488 45.9
AL4G36540 Arabidopsis lyrata HOM05D006287 ORTHO05D008192 9.6e-39 166.4 213 45.5
Carub.0004s2128 Capsella rubella HOM05D006287 ORTHO05D008192 1.6e-38 165.6 222 46.4
Atru.chr7.2375 Acer truncatum HOM05D006287 ORTHO05D008192 8.4e-35 153.3 502 44.0
Haze_21571 Corylus avellana HOM05D006287 ORTHO05D008192 1.1e-34 152.9 267 39.0
Oeu032501.2 Olea europaea HOM05D006287 ORTHO05D008192 3.2e-34 151.4 312 35.6
DCAR_006447 Daucus carota HOM05D006287 ORTHO05D008192 7.9e-33 146.7 337 31.5
AUR62021186 Chenopodium quinoa HOM05D006287 ORTHO05D008192 8.7e-32 143.3 392 44.4
THA.LOC104809984 Tarenaya hassleriana HOM05D006287 ORTHO05D008192 1.6e-30 139.0 222 41.4
CAN.G98.23 Capsicum annuum HOM05D006287 ORTHO05D008192 2.0e-28 132.1 208 36.5
Prupe.6G275900 Prunus persica HOM05D006287 ORTHO05D008192 2.0e-28 132.1 246 36.2
Gohir.A10G099700 Gossypium hirsutum HOM05D006287 ORTHO05D008192 4.5e-28 131.0 268 65.7
ClCG02G013330 Citrullus lanatus HOM05D006287 ORTHO05D008192 5.8e-28 130.6 479 41.3
TPR.G5606 Trifolium pratense HOM05D006287 ORTHO05D008192 1.7e-27 129.0 426 26.8
MD12G1164900 Malus domestica HOM05D006287 ORTHO05D008192 6.5e-27 127.1 180 40.6
AUR62021185 Chenopodium quinoa HOM05D006287 ORTHO05D008192 1.4e-26 125.9 623 21.8
AUR62015978 Chenopodium quinoa HOM05D006287 ORTHO05D008192 5.5e-26 124.0 641 34.3
Ah.13g068920 Amaranthus hybridus HOM05D006287 ORTHO05D008192 1.2e-25 122.9 256 32.4
PGR142G2973 Punica granatum HOM05D006287 ORTHO05D008192 1.2e-25 122.9 474 42.6
LjContig00081g0002723 Lotus japonicus HOM05D006287 ORTHO05D008192 2.7e-25 121.7 403 44.9
Nitab4.5_0001669g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.3e-24 119.4 156 41.0
Gohir.D10G088500 Gossypium hirsutum HOM05D006287 ORTHO05D008192 3.0e-24 118.2 132 49.2
Cc11_g01810 Coffea canephora HOM05D006287 ORTHO05D008192 3.9e-24 117.9 229 34.1
PGSC0003DMG400023145 Solanum tuberosum HOM05D006287 ORTHO05D008192 6.7e-24 117.1 183 37.7
GSVIVG01035807001 Vitis vinifera HOM05D006287 ORTHO05D008192 8.7e-24 116.7 176 40.9
Cpa.g.sc1.269 Carica papaya HOM05D006287 ORTHO05D008192 1.1e-23 116.3 128 46.1
Nitab4.5_0000151g0190 Nicotiana tabacum HOM05D006287 ORTHO05D008192 1.1e-23 116.3 214 35.5
Hma1.2p1_0007F.1_g005110 Hydrangea macrophylla HOM05D006287 ORTHO05D008192 1.9e-23 115.5 197 35.0
CsaV3_2G017510 Cucumis sativus L. HOM05D006287 ORTHO05D008192 1.3e-22 112.8 479 42.2
CSS0048694 Camellia sinensis var. sinensis HOM05D006287 ORTHO05D008192 8.2e-22 110.2 206 34.5
Nn3g20345 Nelumbo nucifera HOM05D006287 ORTHO05D008192 1.8e-21 109.0 226 32.7
BcaNung04645 Brassica carinata HOM05D006287 ORTHO05D008192 2.4e-21 108.6 133 49.6
Potri.006G250700 Populus trichocarpa HOM05D006287 ORTHO05D008192 2.4e-21 108.6 183 36.6
RcHm_v2.0_Chr4g0410561 Rosa chinensis HOM05D006287 ORTHO05D008192 6.9e-21 107.1 179 39.7
Dinv11617 Davidia involucrata HOM05D006287 ORTHO05D008192 1.5e-20 105.9 124 48.4
Duzib168G0154 Durio zibethinus HOM05D006287 ORTHO05D008192 2.6e-20 105.1 202 33.7
FAN08G1130 Fragaria x ananassa HOM05D006287 ORTHO05D008192 2.6e-20 105.1 257 39.7
QL08p000602 Quercus lobata HOM05D006287 ORTHO05D008192 3.4e-20 104.8 192 38.0
MD04G1151000 Malus domestica HOM05D006287 ORTHO05D008192 4.5e-20 104.4 133 42.9
Psat7g237040 Pisum sativum HOM05D006287 ORTHO05D008192 5.9e-20 104.0 165 37.0
VMungo0331G1641 Vigna mungo HOM05D006287 ORTHO05D008192 5.9e-20 104.0 192 34.4
Nn5g27729 Nelumbo nucifera HOM05D006287 ORTHO05D008192 7.7e-20 103.6 178 34.3
QL05p049822 Quercus lobata HOM05D006287 ORTHO05D008192 1.0e-19 103.2 205 34.6
Solyc08g067060.2 Solanum lycopersicum HOM05D006287 ORTHO05D008192 1.3e-19 102.8 166 35.5
CANSAT11G2472 Cannabis sativa HOM05D006287 ORTHO05D008192 2.2e-19 102.1 180 34.4
Gorai.011G097400 Gossypium raimondii HOM05D006287 ORTHO05D008192 2.2e-19 102.1 202 32.7
Sabra06G0196000 Salix brachista HOM05D001686 ORTHO05D008192 2.9e-19 101.7 183 34.4
MSTRG.11775 Avicennia marina HOM05D006287 ORTHO05D008192 3.8e-19 101.3 196 30.1
Sopen08g021010 Solanum pennellii HOM05D006287 ORTHO05D008192 5.0e-19 100.9 165 35.2
Duzib150G0458 Durio zibethinus HOM05D006287 ORTHO05D008192 6.5e-19 100.5 219 31.1
Lj7C718G17 Lonicera japonica HOM05D006287 ORTHO05D008192 4.2e-18 97.8 153 39.9
Manes.03G017400 Manihot esculenta HOM05D006287 ORTHO05D008192 5.5e-18 97.4 104 51.9
Lalb_Chr07g0185941 Lupinus albus HOM05D006287 ORTHO05D008192 7.2e-18 97.1 121 43.8
Oeu030203.1 Olea europaea HOM05D006287 ORTHO05D000003 9.4e-18 96.7 293 27.0
arahy.Tifrunner.gnm1.ann1.VPFI8Q Arachis hypogaea HOM05D006287 ORTHO05D008192 1.6e-17 95.9 198 33.8
COL.COLO4_23984 Corchorus olitorius HOM05D006287 ORTHO05D008192 2.7e-17 95.1 121 43.0
Ca_26550_v3 Cicer arietinum L. HOM05D006287 ORTHO05D008192 2.3e-16 92.0 124 41.1
TWI63G1321 Tripterygium wilfordii HOM05D006287 ORTHO05D008192 2.3e-16 92.0 233 32.2
Glyma.07G068500 Glycine max HOM05D006287 ORTHO05D008192 3.0e-16 91.7 195 34.9
Phvul.009G090400 Phaseolus vulgaris HOM05D006287 ORTHO05D008192 3.0e-16 91.7 128 42.2
Actinidia15687 Actinidia chinensis HOM05D006287 ORTHO05D008192 6.7e-16 90.5 130 40.0
Sed0001816 Sechium edule HOM05D006287 ORTHO05D008192 8.8e-16 90.1 426 43.0
RcHm_v2.0_Chr7g0216391 Rosa chinensis HOM05D006287 ORTHO05D008192 2.0e-15 89.0 144 37.5
BcaNung04646 Brassica carinata HOM05D006287 ORTHO05D008192 2.5e-15 88.6 50 74.0
Eucgr.I01690 Eucalyptus grandis HOM05D006287 ORTHO05D008192 2.5e-15 88.6 133 38.3
Lsat_1_v5_gn_6_22161 Lactuca sativa HOM05D006287 ORTHO05D008192 4.8e-14 84.3 176 35.2
Hund04746 Selenicereus undatus HOM05D006287 ORTHO05D008192 4.8e-14 84.3 134 34.3
DCAR_006446 Daucus carota HOM05D006287 ORTHO05D008192 6.3e-14 84.0 220 31.4
TPR.G5411 Trifolium pratense HOM05D008207 ORTHO05D010373 1.1e-13 83.2 136 37.5
EL10Ac3g05636 Beta vulgaris HOM05D006287 ORTHO05D008192 4.1e-13 81.3 144 38.9
Medtr4g076540 Medicago truncatula HOM05D006287 ORTHO05D008192 6.9e-13 80.5 180 31.1
Sed0018262 Sechium edule HOM05D006287 ORTHO05D008192 1.2e-12 79.7 211 29.9
CDE03G0083 Ceratophyllum demersum HOM05D006287 ORTHO05D008192 2.0e-12 79.0 243 28.4
Aqoxy7G02057 Aquilegia oxysepala HOM05D006287 ORTHO05D008192 7.7e-12 77.0 230 28.3
Nitab4.5_0008089g0010 Nicotiana tabacum HOM05D006287 ORTHO05D008192 7.7e-12 77.0 105 37.1
CAN.G1030.29 Capsicum annuum HOM05D006287 ORTHO05D008192 3.8e-11 74.7 123 35.8
HPP92_023171 Vanilla planifolia HOM05D006287 ORTHO05D008192 3.8e-11 74.7 199 30.7
FvH4_5g25890 Fragaria vesca HOM05D006287 ORTHO05D008192 6.5e-11 73.9 148 35.1
FAN18G3351 Fragaria x ananassa HOM05D006287 ORTHO05D008192 6.5e-11 73.9 148 35.1
Actinidia05689 Actinidia chinensis HOM05D007639 ORTHO05D009509 2.5e-10 72.0 341 21.7
HanXRQChr02g0050751 Helianthus annuus HOM05D006287 ORTHO05D008192 2.5e-10 72.0 199 30.2
Peaxi162Scf00341g00062 Petunia axillaris HOM05D006287 ORTHO05D008192 4.2e-10 71.2 174 28.2
AUR62015977 Chenopodium quinoa HOM05D006287 ORTHO05D008192 9.4e-10 70.1 260 22.7
Os01g0611900 Oryza sativa ssp. japonica HOM05D006287 ORTHO05D008192 9.4e-10 70.1 237 27.8
SGA_v2.0_scaffold149G36498 Striga asiatica HOM05D002007 ORTHO05D000355 1.6e-09 69.3 320 24.7
ECA233G6190 Erigeron canadensis HOM05D007145 ORTHO05D008952 2.1e-09 68.9 265 24.5
Psat6g067680 Pisum sativum HOM05D000855 ORTHO05D008530 3.6e-09 68.2 176 29.0
Prupe.4G025500 Prunus persica HOM05D007956 ORTHO05D010152 4.7e-09 67.8 268 24.6
Haze_05958 Corylus avellana HOM05D006556 ORTHO05D008146 6.1e-09 67.4 195 25.1
RcHm_v2.0_Chr6g0264781 Rosa chinensis HOM05D006287 ORTHO05D008192 6.1e-09 67.4 116 39.7
ATR0782G042 Amborella trichopoda HOM05D006287 ORTHO05D008192 7.9e-09 67.0 233 25.8
Hma1.2p1_0631F.1_g192380 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 7.9e-09 67.0 199 24.6
Hma1.2p1_0631F.1_g192390 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 7.9e-09 67.0 199 24.6
Hma1.2p1_0631F.1_g192404 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 7.9e-09 67.0 199 24.6
MBI08_g04815_MAGBIO Magnolia biondii HOM05D006287 ORTHO05D008192 1.0e-08 66.6 139 31.7
Lsat_1_v5_gn_6_5460 Lactuca sativa HOM05D007145 ORTHO05D008952 1.8e-08 65.9 265 22.6
CiPaw.09G092100 Carya illinoinensis HOM05D002890 ORTHO05D009847 2.3e-08 65.5 224 24.6
GSVIVG01021583001 Vitis vinifera HOM05D006556 ORTHO05D008146 2.3e-08 65.5 189 25.9
Cfa000760 Carpinus fangiana HOM05D006556 ORTHO05D008146 3.0e-08 65.1 195 24.1
Medtr1g066900 Medicago truncatula HOM05D000855 ORTHO05D008530 5.1e-08 64.3 176 27.8
Ca_11448_v3 Cicer arietinum L. HOM05D000855 ORTHO05D008530 1.1e-07 63.2 176 27.8
Ciclev10026953m.g Citrus clementina HOM05D006556 ORTHO05D008146 1.1e-07 63.2 179 25.1
Sabra05G0084800 Salix brachista HOM05D006556 ORTHO05D008146 1.1e-07 63.2 194 23.2
MD07G1057900 Malus domestica HOM05D002890 ORTHO05D009847 1.5e-07 62.8 269 24.9
SMO010G0006 Selaginella moellendorffii HOM05D000855 ORTHO05D000003 1.5e-07 62.8 195 26.7
Atru.chr3.118 Acer truncatum HOM05D006556 ORTHO05D008146 2.0e-07 62.4 180 24.4
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 2.0e-07 62.4 180 26.7
Lj5g0021887 Lotus japonicus HOM05D000855 ORTHO05D008530 2.0e-07 62.4 176 26.7
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 2.0e-07 62.4 180 26.1
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 2.6e-07 62.0 179 27.4
Aqoxy2G02373 Aquilegia oxysepala HOM05D007559 ORTHO05D009642 2.6e-07 62.0 210 25.7
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 2.6e-07 62.0 176 26.7
FvH4_5g17981 Fragaria vesca HOM05D007145 ORTHO05D008952 3.3e-07 61.6 265 23.8
HanXRQChr13g0394161 Helianthus annuus HOM05D007145 ORTHO05D008952 3.3e-07 61.6 287 23.7
Potri.005G102400 Populus trichocarpa HOM05D006556 ORTHO05D008146 3.3e-07 61.6 334 20.7
Ca_23675_v3 Cicer arietinum L. HOM05D007145 ORTHO05D008952 4.4e-07 61.2 263 24.7
MELO3C020947.2 Cucumis melo HOM05D006287 ORTHO05D008192 4.4e-07 61.2 198 25.3
DCAR_014305 Daucus carota HOM05D000534 ORTHO05D008146 4.4e-07 61.2 185 23.2
FAN06G0419 Fragaria x ananassa HOM05D006556 ORTHO05D008146 4.4e-07 61.2 195 23.6
Psat6g065880 Pisum sativum HOM05D006895 ORTHO05D008605 4.4e-07 61.2 219 24.2
PGR042G0565 Punica granatum HOM05D002890 ORTHO05D009847 4.4e-07 61.2 221 24.0
PGR042G2623 Punica granatum HOM05D007956 ORTHO05D010152 4.4e-07 61.2 305 23.9
Sp6g29030 Schrenkiella parvula HOM05D000424 ORTHO05D000355 4.4e-07 61.2 314 23.6
PSO170G6018 Papaver somniferum HOM05D007340 ORTHO05D008979 5.7e-07 60.8 260 23.8
MELO3C009312.2 Cucumis melo HOM05D000855 ORTHO05D008530 7.4e-07 60.5 188 25.0
C02p07450 Brassica napus HOM05D000424 ORTHO05D000355 9.7e-07 60.1 303 23.8
BolC2t06676H Brassica oleracea HOM05D000424 ORTHO05D000355 9.7e-07 60.1 303 23.8
HPP92_006954 Vanilla planifolia HOM05D007145 ORTHO05D008952 1.3e-06 59.7 261 24.5
AT2G16880 Arabidopsis thaliana HOM05D005287 ORTHO05D006893 1.7e-06 59.3 220 26.8
CARHR084060 Cardamine hirsuta HOM05D000855 ORTHO05D008530 1.7e-06 59.3 179 24.6
HanXRQChr10g0293751 Helianthus annuus HOM05D006218 ORTHO05D007338 1.7e-06 59.3 284 21.5
Carub.0003s3161 Capsella rubella HOM05D006556 ORTHO05D008146 2.2e-06 58.9 148 25.7
QL08p048137 Quercus lobata HOM05D006232 ORTHO05D007746 2.2e-06 58.9 200 28.5
Duzib138G0398 Durio zibethinus HOM05D006232 ORTHO05D007746 2.8e-06 58.5 278 24.1
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 2.8e-06 58.5 319 24.5
Glyma.11G135300 Glycine max HOM05D006232 ORTHO05D007746 2.8e-06 58.5 188 27.7
RcHm_v2.0_Chr7g0177611 Rosa chinensis HOM05D007145 ORTHO05D008952 2.8e-06 58.5 263 24.7
FAN10G2028 Fragaria x ananassa HOM05D006556 ORTHO05D008146 3.7e-06 58.2 195 23.6
HanXRQChr13g0420881 Helianthus annuus HOM05D000162 ORTHO05D000090 3.7e-06 58.2 199 23.6
RcHm_v2.0_Chr1g0326571 Rosa chinensis HOM05D006556 ORTHO05D008146 3.7e-06 58.2 189 22.8
Sopen01g021730 Solanum pennellii HOM05D001779 ORTHO05D001753 3.7e-06 58.2 191 25.7
Aqoxy6G01638 Aquilegia oxysepala HOM05D000001 ORTHO05D000003 4.8e-06 57.8 184 26.6
BcaC03g13436 Brassica carinata HOM05D000424 ORTHO05D000355 4.8e-06 57.8 303 23.4
CiPaw.09G148500 Carya illinoinensis HOM05D006556 ORTHO05D008146 4.8e-06 57.8 200 23.5
FAN21G3687 Fragaria x ananassa HOM05D007212 ORTHO05D009094 4.8e-06 57.8 194 25.8
SGA_v2.0_scaffold120G32959 Striga asiatica HOM05D007145 ORTHO05D008952 4.8e-06 57.8 265 24.5
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 6.3e-06 57.4 198 25.3
Rhsim10G0193900 Rhododendron simsii HOM05D006556 ORTHO05D008146 6.3e-06 57.4 164 26.2
SHI19982 Sapria himalayana HOM05D006232 ORTHO05D007746 6.3e-06 57.4 195 26.7
TWI38G0189 Tripterygium wilfordii HOM05D007956 ORTHO05D010152 6.3e-06 57.4 266 23.7
AL6G21210 Arabidopsis lyrata HOM05D007251 ORTHO05D009266 8.2e-06 57.0 202 25.7
FAN16G0386 Fragaria x ananassa HOM05D007212 ORTHO05D009094 8.2e-06 57.0 190 25.3
Rhsim13G0157400 Rhododendron simsii HOM05D003755 ORTHO05D004385 8.2e-06 57.0 242 26.0


User provided reference genes

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