Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G54690 Arabidopsis thaliana HOM05D004257 ORTHO05D005202 5.6e-195 684.1 351 100.0
AL5G35770 Arabidopsis lyrata HOM05D004257 ORTHO05D005202 5.8e-192 674.1 351 98.9
Carub.0005s2129 Capsella rubella HOM05D004257 ORTHO05D005202 5.7e-187 657.5 355 95.8
Thhalv10010498m.g Eutrema salsugineum HOM05D004257 ORTHO05D005202 8.2e-186 653.7 353 95.2
CARHR164610 Cardamine hirsuta HOM05D004257 ORTHO05D005202 3.4e-184 648.3 354 94.4
Sp5g07760 Schrenkiella parvula HOM05D004257 ORTHO05D005202 2.3e-180 635.6 354 92.7
BcaC08g44693 Brassica carinata HOM05D004257 ORTHO05D005202 4.5e-176 621.3 351 91.5
C06p22290 Brassica napus HOM05D004257 ORTHO05D005202 4.5e-176 621.3 351 91.5
BcaB02g07726 Brassica carinata HOM05D004257 ORTHO05D005202 1.7e-175 619.4 351 91.5
BolC6t37415H Brassica oleracea HOM05D004257 ORTHO05D005202 2.9e-175 618.6 351 91.2
BcaC02g09050 Brassica carinata HOM05D004257 ORTHO05D005202 9.4e-174 613.6 351 90.0
C04p37820 Brassica napus HOM05D004257 ORTHO05D005202 9.4e-174 613.6 351 90.0
BolC4t25358H Brassica oleracea HOM05D004257 ORTHO05D005202 9.4e-174 613.6 351 90.0
A04p05160 Brassica napus HOM05D004257 ORTHO05D005202 3.9e-172 608.2 351 90.0
BraA04t16226Z Brassica rapa HOM05D004257 ORTHO05D005202 3.9e-172 608.2 351 90.0
Aa31sc35G30 Aethionema arabicum HOM05D004257 ORTHO05D005202 8.8e-172 607.1 351 90.0
THA.LOC104825258 Tarenaya hassleriana HOM05D004257 ORTHO05D005202 2.2e-167 592.4 351 88.0
BraA07t29902Z Brassica rapa HOM05D004257 ORTHO05D005202 4.8e-162 574.7 351 86.9
BcaC05g28242 Brassica carinata HOM05D004257 ORTHO05D005202 1.9e-158 562.8 351 85.2
BolC5t33007H Brassica oleracea HOM05D004257 ORTHO05D005202 1.9e-158 562.8 351 85.2
Sabra02G0030200 Salix brachista HOM05D004257 ORTHO05D005202 5.9e-152 541.2 351 78.6
ClCG07G001120 Citrullus lanatus HOM05D004257 ORTHO05D005202 1.3e-151 540.0 355 78.9
Potri.002G037400 Populus trichocarpa HOM05D004257 ORTHO05D005202 2.9e-151 538.9 351 78.9
RcHm_v2.0_Chr6g0287891 Rosa chinensis HOM05D004257 ORTHO05D005202 2.9e-151 538.9 353 77.3
FAN20G1479 Fragaria x ananassa HOM05D004257 ORTHO05D005202 5.0e-151 538.1 351 78.1
FAN27G2888 Fragaria x ananassa HOM05D004257 ORTHO05D005202 8.5e-151 537.3 351 78.1
Potri.005G225700 Populus trichocarpa HOM05D004257 ORTHO05D005202 8.5e-151 537.3 351 78.3
Thecc.01G256600 Theobroma cacao HOM05D004257 ORTHO05D005202 1.5e-150 536.6 351 78.9
COL.COLO4_04031 Corchorus olitorius HOM05D004257 ORTHO05D005202 2.5e-150 535.8 351 76.9
Sopen03g028840 Solanum pennellii HOM05D004257 ORTHO05D005202 2.5e-150 535.8 351 75.8
Duzib133G1463 Durio zibethinus HOM05D004257 ORTHO05D005202 3.2e-150 535.4 351 77.8
Duzib138G0002 Durio zibethinus HOM05D004257 ORTHO05D005202 5.5e-150 534.6 351 78.1
FAN24G1061 Fragaria x ananassa HOM05D004257 ORTHO05D005202 5.5e-150 534.6 351 77.8
Solyc03g098140.3 Solanum lycopersicum HOM05D004257 ORTHO05D005202 2.7e-149 532.3 351 75.2
CAN.G637.23 Capsicum annuum HOM05D004257 ORTHO05D005202 3.6e-149 531.9 352 76.1
Nitab4.5_0004454g0010 Nicotiana tabacum HOM05D004257 ORTHO05D005202 3.6e-149 531.9 351 76.4
FvH4_2g21300 Fragaria vesca HOM05D004257 ORTHO05D005202 1.0e-148 530.4 351 77.8
Gorai.001G178500 Gossypium raimondii HOM05D004257 ORTHO05D005202 1.4e-148 530.0 351 76.4
PGSC0003DMG402031052 Solanum tuberosum HOM05D004257 ORTHO05D005202 2.3e-148 529.3 351 75.5
Gohir.D07G155600 Gossypium hirsutum HOM05D004257 ORTHO05D005202 4.0e-148 528.5 351 76.1
TWI18G0956 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 4.0e-148 528.5 351 76.9
CsaV3_3G022160 Cucumis sativus L. HOM05D004257 ORTHO05D005202 5.2e-148 528.1 351 77.2
Cfa002439 Carpinus fangiana HOM05D004257 ORTHO05D005202 8.8e-148 527.3 352 77.6
FAN15G2746 Fragaria x ananassa HOM05D004257 ORTHO05D005202 8.8e-148 527.3 351 76.9
Sed0007154 Sechium edule HOM05D004257 ORTHO05D005202 2.0e-147 526.2 351 76.9
Gohir.A07G149400 Gossypium hirsutum HOM05D004257 ORTHO05D005202 3.4e-147 525.4 351 75.2
MELO3C012874.2 Cucumis melo HOM05D004257 ORTHO05D005202 5.7e-147 524.6 354 77.4
TWI12G0832 Tripterygium wilfordii HOM05D004257 ORTHO05D005202 5.7e-147 524.6 351 76.1
Prupe.8G222200 Prunus persica HOM05D004257 ORTHO05D005202 9.8e-147 523.9 361 76.2
QL09p039362 Quercus lobata HOM05D004257 ORTHO05D005202 1.3e-146 523.5 327 80.1
Sed0014699 Sechium edule HOM05D004257 ORTHO05D005202 1.3e-146 523.5 354 76.6
VMungo1383G3387 Vigna mungo HOM05D004257 ORTHO05D005202 1.3e-146 523.5 351 76.6
Peaxi162Scf00171g00722 Petunia axillaris HOM05D004257 ORTHO05D005202 2.8e-146 522.3 351 74.9
Manes.12G033300 Manihot esculenta HOM05D004257 ORTHO05D005202 3.7e-146 521.9 324 79.9
CiPaw.03G265600 Carya illinoinensis HOM05D004257 ORTHO05D005202 6.3e-146 521.2 351 76.1
Ah.04g163130 Amaranthus hybridus HOM05D004257 ORTHO05D005202 8.3e-146 520.8 351 74.6
Cc04_g09710 Coffea canephora HOM05D004257 ORTHO05D005202 8.3e-146 520.8 355 75.2
MD10G1182800 Malus domestica HOM05D004257 ORTHO05D005202 8.3e-146 520.8 364 74.5
Medtr7g097060 Medicago truncatula HOM05D004257 ORTHO05D005202 8.3e-146 520.8 355 75.8
Gorai.007G147100 Gossypium raimondii HOM05D004257 ORTHO05D005202 1.8e-145 519.6 353 75.6
Aqoxy2G03662 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 2.4e-145 519.2 351 74.6
TAR365G0817 Trochodendron aralioides HOM05D004257 ORTHO05D005202 2.4e-145 519.2 351 75.8
vmacro10363 Vaccinium macrocarpon HOM05D004257 ORTHO05D005202 2.4e-145 519.2 358 75.7
Lalb_Chr01g0019631 Lupinus albus HOM05D004257 ORTHO05D005202 4.1e-145 518.5 351 76.6
Lj5A229T68 Lonicera japonica HOM05D004257 ORTHO05D005202 5.4e-145 518.1 351 75.2
CSS0006901 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 9.1e-145 517.3 352 75.0
CSS0016221 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 9.1e-145 517.3 352 75.0
CiPaw.04G187400 Carya illinoinensis HOM05D004257 ORTHO05D005202 9.1e-145 517.3 339 77.3
Ciclev10021043m.g Citrus clementina HOM05D004257 ORTHO05D005202 9.1e-145 517.3 324 78.7
Nn3g19680 Nelumbo nucifera HOM05D004257 ORTHO05D005202 1.2e-144 516.9 351 75.5
Phvul.001G161500 Phaseolus vulgaris HOM05D004257 ORTHO05D005202 1.2e-144 516.9 355 75.2
CANSAT35G1745 Cannabis sativa HOM05D004257 ORTHO05D005202 2.7e-144 515.8 351 74.9
Dinv06012 Davidia involucrata HOM05D004257 ORTHO05D005202 2.7e-144 515.8 351 75.5
CANSAT01G0143 Cannabis sativa HOM05D004257 ORTHO05D005202 4.5e-144 515.0 353 74.8
Glyma.19G165400 Glycine max HOM05D004257 ORTHO05D005202 4.5e-144 515.0 351 75.8
Gohir.D11G137300 Gossypium hirsutum HOM05D004257 ORTHO05D005202 4.5e-144 515.0 353 74.8
PGR044G0150 Punica granatum HOM05D004257 ORTHO05D005202 4.5e-144 515.0 354 75.7
MD05G1195500 Malus domestica HOM05D004257 ORTHO05D005202 5.9e-144 514.6 326 79.4
Cpa.g.sc473.3 Carica papaya HOM05D004257 ORTHO05D005202 7.7e-144 514.2 339 77.3
Haze_24645 Corylus avellana HOM05D004257 ORTHO05D005202 7.7e-144 514.2 379 71.8
Atru.chr5.1712 Acer truncatum HOM05D004257 ORTHO05D005202 1.0e-143 513.8 351 74.9
Hma1.2p1_0075F.1_g039210 Hydrangea macrophylla HOM05D004257 ORTHO05D005202 1.3e-143 513.5 351 74.9
Gohir.A11G131450 Gossypium hirsutum HOM05D004257 ORTHO05D005202 1.7e-143 513.1 353 74.8
DCAR_010071 Daucus carota HOM05D004257 ORTHO05D005202 2.3e-143 512.7 351 73.8
PSO832G0932 Papaver somniferum HOM05D004257 ORTHO05D005202 3.8e-143 511.9 351 73.5
Psat3g056800 Pisum sativum HOM05D004257 ORTHO05D005202 5.0e-143 511.5 323 78.9
SGA_v2.0_scaffold90G27780 Striga asiatica HOM05D004257 ORTHO05D005202 5.0e-143 511.5 351 73.8
Actinidia38939 Actinidia chinensis HOM05D004257 ORTHO05D005202 6.6e-143 511.1 351 74.6
Ca_08681_v3 Cicer arietinum L. HOM05D004257 ORTHO05D005202 6.6e-143 511.1 351 75.5
Lj1g0005279 Lotus japonicus HOM05D004257 ORTHO05D005202 1.5e-142 510.0 351 74.4
Nitab4.5_0000936g0060 Nicotiana tabacum HOM05D004257 ORTHO05D005202 2.5e-142 509.2 337 76.0
Aqoxy5G00217 Aquilegia oxysepala HOM05D004257 ORTHO05D005202 4.2e-142 508.4 323 80.2
arahy.Tifrunner.gnm1.ann1.63G7RJ Arachis hypogaea HOM05D004257 ORTHO05D005202 7.2e-142 507.7 323 78.6
PSO210G0560 Papaver somniferum HOM05D004257 ORTHO05D005202 9.5e-142 507.3 351 72.9
AUR62040921 Chenopodium quinoa HOM05D004257 ORTHO05D005202 1.2e-141 506.9 349 73.9
Eucgr.K03257 Eucalyptus grandis HOM05D004257 ORTHO05D005202 2.1e-141 506.1 354 74.0
MBI07_g16916_MAGBIO Magnolia biondii HOM05D004257 ORTHO05D005202 2.1e-141 506.1 319 79.9
Migut.O00233 Erythranthe guttata HOM05D004257 ORTHO05D005202 1.4e-140 503.4 351 72.9
Hund06906 Selenicereus undatus HOM05D004257 ORTHO05D005202 1.2e-139 500.4 351 72.9
TAR362G0002 Trochodendron aralioides HOM05D004257 ORTHO05D005202 1.5e-139 500.0 351 73.5
AUR62004833 Chenopodium quinoa HOM05D004257 ORTHO05D005202 2.0e-139 499.6 349 73.1
PSO675G8702 Papaver somniferum HOM05D004257 ORTHO05D005202 2.0e-139 499.6 351 71.2
MSTRG.23192 Avicennia marina HOM05D004257 ORTHO05D005202 1.7e-138 496.5 351 71.8
PSO675G6112 Papaver somniferum HOM05D004257 ORTHO05D005202 1.7e-138 496.5 351 70.9
arahy.Tifrunner.gnm1.ann1.BG7UA0 Arachis hypogaea HOM05D004257 ORTHO05D005202 2.8e-138 495.7 344 73.8
DCAR_014267 Daucus carota HOM05D004257 ORTHO05D005202 3.7e-138 495.4 323 74.9
PSO675G8755 Papaver somniferum HOM05D004257 ORTHO05D005202 3.7e-138 495.4 351 70.7
Sc09g0004250 Simmondsia chinensis HOM05D004257 ORTHO05D005202 8.3e-138 494.2 318 76.4
HanXRQChr17g0542071 Helianthus annuus HOM05D004257 ORTHO05D005202 3.2e-137 492.3 318 78.6
Lsat_1_v5_gn_3_39581 Lactuca sativa HOM05D004257 ORTHO05D005202 2.3e-135 486.1 318 77.0
TPR.G7131 Trifolium pratense HOM05D004257 ORTHO05D005202 8.6e-135 484.2 364 70.3
MSTRG.11529 Avicennia marina HOM05D004257 ORTHO05D005202 7.3e-134 481.1 344 70.6
CSS0001153 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 4.0e-132 475.3 353 71.1
HPP92_017366 Vanilla planifolia HOM05D004257 ORTHO05D005202 4.4e-131 471.9 352 69.6
HPP92_010358 Vanilla planifolia HOM05D004257 ORTHO05D005202 1.2e-128 463.8 352 67.3
Zm00001eb207770 Zea mays HOM05D004257 ORTHO05D005202 6.0e-128 461.5 355 67.6
ATR0736G010 Amborella trichopoda HOM05D004257 ORTHO05D005202 1.7e-127 459.9 325 71.1
Zm00001eb232580 Zea mays HOM05D004257 ORTHO05D005202 1.5e-126 456.8 355 67.6
CSS0049630 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 7.3e-126 454.5 351 68.9
Os02g0158300 Oryza sativa ssp. japonica HOM05D004257 ORTHO05D005202 2.8e-125 452.6 327 70.0
C05p42800 Brassica napus HOM05D004257 ORTHO05D005202 4.9e-122 441.8 259 88.0
Oeu023635.1 Olea europaea HOM05D004257 ORTHO05D005202 2.4e-121 439.5 335 67.5
Mapoly0023s0132 Marchantia polymorpha HOM05D004257 ORTHO05D005202 1.2e-120 437.2 328 64.9
AagrBONN_evm.TU.Sc2ySwM_344.3818 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.6e-120 436.8 330 65.8
CDE04G1210 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 4.6e-120 435.3 289 73.4
unitig_0.g1405 Utricularia gibba HOM05D004257 ORTHO05D005202 4.6e-120 435.3 351 66.4
GSVIVG01028350001 Vitis vinifera HOM05D004257 ORTHO05D005202 7.8e-120 434.5 351 65.2
AagrBONN_evm.TU.Sc2ySwM_344.1200 Anthoceros agrestis HOM05D004257 ORTHO05D005202 2.3e-119 433.0 326 65.6
CSS0045427 Camellia sinensis var. sinensis HOM05D004257 ORTHO05D005202 6.8e-116 421.4 352 66.2
CDE02G1046 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 2.6e-115 419.5 324 67.3
unitig_61.g26464 Utricularia gibba HOM05D004257 ORTHO05D005202 1.3e-114 417.2 327 66.7
SalBow5G3197 Salvia bowleyana HOM05D004257 ORTHO05D005202 3.7e-114 415.6 299 70.6
SalBow5G4297 Salvia bowleyana HOM05D004257 ORTHO05D005202 3.7e-114 415.6 299 70.6
SMO367G0216 Selaginella moellendorffii HOM05D004257 ORTHO05D005202 3.7e-114 415.6 315 64.8
Pp3c23_13620 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.1e-109 399.8 318 61.3
Pp3c5_14840 Physcomitrium patens HOM05D004257 ORTHO05D005202 1.1e-108 397.5 318 61.6
EL10Ac4g09002 Beta vulgaris HOM05D004257 ORTHO05D005202 2.2e-106 389.8 281 70.8
CBR_g20340 Chara braunii HOM05D004257 ORTHO05D005202 2.1e-104 383.3 323 57.3
ECA246G4101 Erigeron canadensis HOM05D004257 ORTHO05D005202 6.0e-104 381.7 230 81.7
BcaB02g08451 Brassica carinata HOM05D004257 ORTHO05D005202 5.6e-102 375.2 199 94.0
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 5.6e-94 348.6 228 75.0
Pp3c24_11040 Physcomitrium patens HOM05D004257 ORTHO05D005202 2.0e-83 313.5 298 54.7
PSO470G0001 Papaver somniferum HOM05D004257 ORTHO05D005202 2.5e-73 280.0 218 65.1
CAN.G65.83 Capsicum annuum HOM05D004257 ORTHO05D005202 4.2e-73 279.3 247 59.9
SGA_v2.0_scaffold25G10776 Striga asiatica HOM05D004257 ORTHO05D005202 6.9e-68 261.9 185 74.1
A07p22230 Brassica napus HOM05D004257 ORTHO05D005202 2.1e-64 250.4 131 96.2
SEGI_22917 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 5.1e-63 245.7 194 59.8
SEGI_29481 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 5.1e-63 245.7 194 59.8
AagrBONN_evm.TU.Sc2ySwM_228.5393 Anthoceros agrestis HOM05D004257 ORTHO05D005202 6.5e-58 228.8 165 66.7
Oeu036414.1 Olea europaea HOM05D004257 ORTHO05D005202 7.4e-54 215.3 123 85.4
Actinidia34751 Actinidia chinensis HOM05D000378 ORTHO05D005202 7.0e-52 208.8 140 73.6
BcaC07g39794 Brassica carinata HOM05D004257 ORTHO05D005202 1.3e-50 204.5 164 70.1
BolC8t50595H Brassica oleracea HOM05D004257 ORTHO05D005202 2.2e-50 203.8 164 70.1
SEGI_04972 Sequoiadendron giganteum HOM05D004257 ORTHO05D005202 1.1e-49 201.4 122 77.9
C08p29840 Brassica napus HOM05D004257 ORTHO05D005202 4.7e-48 196.1 164 67.7
AagrBONN_evm.TU.Sc2ySwM_228.5394 Anthoceros agrestis HOM05D004257 ORTHO05D005202 1.9e-33 147.5 129 56.6
Peaxi162Scf00643g00656 Petunia axillaris HOM05D004257 ORTHO05D005202 2.7e-27 127.1 118 61.0
EL10Ac4g09003 Beta vulgaris HOM05D004257 ORTHO05D005202 1.3e-26 124.8 70 85.7
Lsat_1_v5_gn_8_28701 Lactuca sativa HOM05D004257 ORTHO05D005202 6.6e-26 122.5 92 71.7
Rhsim05G0133300 Rhododendron simsii HOM05D004257 ORTHO05D005202 1.8e-23 114.4 90 65.6
Aqoxy1G04111 Aquilegia oxysepala HOM05D004257 ORTHO05D004515 4.0e-23 113.2 163 41.7
Lj6g0021985 Lotus japonicus HOM05D004257 ORTHO05D236371 5.4e-20 102.8 78 61.5
BcaB01g01067 Brassica carinata HOM05D004257 ORTHO05D092693 1.9e-17 94.4 78 64.1
Pp3c2_23370 Physcomitrium patens HOM05D004257 ORTHO05D005202 4.3e-17 93.2 118 44.1
Rhsim08G0010200 Rhododendron simsii HOM05D000535 ORTHO05D000427 7.3e-17 92.4 69 62.3
Rhsim04G0042100 Rhododendron simsii HOM05D004257 ORTHO05D005202 7.8e-11 72.4 138 37.0
Lsat_1_v5_gn_6_26721 Lactuca sativa HOM05D004257 ORTHO05D230427 5.0e-10 69.7 42 83.3
CDE04G3164 Ceratophyllum demersum HOM05D004257 ORTHO05D130150 2.1e-08 64.3 40 72.5
RhsimUnG0176200 Rhododendron simsii HOM05D000026 ORTHO05D000127 1.8e-07 61.2 50 60.0


User provided reference genes

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