Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G54480 Arabidopsis thaliana HOM05D005955 ORTHO05D007633 6.9e-156 553.9 275 100.0
AL5G35530 Arabidopsis lyrata HOM05D005955 ORTHO05D007633 5.0e-146 521.2 275 93.5
Sp5g07940 Schrenkiella parvula HOM05D005955 ORTHO05D007633 5.5e-137 491.1 275 89.5
Thhalv10010628m.g Eutrema salsugineum HOM05D005955 ORTHO05D007633 1.7e-133 479.6 275 86.2
Carub.0005s2110 Capsella rubella HOM05D005955 ORTHO05D007633 2.2e-133 479.2 275 87.3
BraA04t16235Z Brassica rapa HOM05D005955 ORTHO05D007633 1.5e-131 473.0 276 86.6
BcaB02g08444 Brassica carinata HOM05D005955 ORTHO05D007633 5.9e-131 471.1 275 87.3
A04p05350 Brassica napus HOM05D005955 ORTHO05D007633 3.8e-130 468.4 277 85.9
BolC8t50576H Brassica oleracea HOM05D005955 ORTHO05D007633 2.1e-128 462.6 276 85.1
C08p29670 Brassica napus HOM05D005955 ORTHO05D007633 2.7e-128 462.2 276 85.1
BcaB01g00190 Brassica carinata HOM05D005955 ORTHO05D007633 1.1e-126 456.8 275 85.1
BcaC02g09066 Brassica carinata HOM05D005955 ORTHO05D007633 4.4e-126 454.9 279 83.9
C04p38040 Brassica napus HOM05D005955 ORTHO05D007633 4.4e-126 454.9 279 83.9
A09p47410 Brassica napus HOM05D005955 ORTHO05D007633 1.7e-125 453.0 276 84.4
Aa31sc434G20 Aethionema arabicum HOM05D005955 ORTHO05D007633 2.0e-123 446.0 260 84.2
THA.LOC104824190 Tarenaya hassleriana HOM05D005955 ORTHO05D007633 7.2e-113 411.0 280 75.4
Ciclev10005678m.g Citrus clementina HOM05D005955 ORTHO05D007633 1.4e-103 380.2 267 71.5
CiPaw.13G012200 Carya illinoinensis HOM05D005955 ORTHO05D007633 6.8e-103 377.9 257 73.2
TWI63G0596 Tripterygium wilfordii HOM05D005955 ORTHO05D007633 7.5e-102 374.4 255 73.3
Atru.chr12.1378 Acer truncatum HOM05D005955 ORTHO05D007633 2.2e-101 372.9 268 69.4
Potri.001G025601 Populus trichocarpa HOM05D005955 ORTHO05D007633 8.3e-101 370.9 254 71.7
Haze_03068 Corylus avellana HOM05D005955 ORTHO05D007633 1.4e-100 370.2 266 69.5
Lalb_Chr04g0264041 Lupinus albus HOM05D005955 ORTHO05D007633 4.1e-100 368.6 252 71.8
Manes.11G004000 Manihot esculenta HOM05D005955 ORTHO05D007633 7.0e-100 367.9 258 70.9
GSVIVG01000659001 Vitis vinifera HOM05D005955 ORTHO05D007633 7.0e-100 367.9 240 74.2
QL04p014297 Quercus lobata HOM05D005955 ORTHO05D007633 1.2e-99 367.1 270 67.8
Thecc.10G166400 Theobroma cacao HOM05D005955 ORTHO05D007633 1.6e-99 366.7 266 69.2
Glyma.11G154400 Glycine max HOM05D005955 ORTHO05D007633 2.7e-99 365.9 253 71.5
MD02G1290300 Malus domestica HOM05D005955 ORTHO05D007633 5.9e-99 364.8 270 67.0
Nitab4.5_0001681g0050 Nicotiana tabacum HOM05D005955 ORTHO05D007633 7.8e-99 364.4 255 70.6
Medtr3g017610 Medicago truncatula HOM05D005955 ORTHO05D007633 3.9e-98 362.1 267 67.0
Sabra01G0018900 Salix brachista HOM05D005955 ORTHO05D007633 3.9e-98 362.1 256 69.5
Ca_27127_v3 Cicer arietinum L. HOM05D005955 ORTHO05D007633 6.6e-98 361.3 252 71.4
Duzib128G0282 Durio zibethinus HOM05D005955 ORTHO05D007633 6.6e-98 361.3 272 68.4
Psat5g219280 Pisum sativum HOM05D005955 ORTHO05D007633 6.6e-98 361.3 250 71.6
Cpa.g.sc223.13 Carica papaya HOM05D005955 ORTHO05D007633 1.9e-97 359.8 245 73.1
Gohir.D04G014500 Gossypium hirsutum HOM05D005955 ORTHO05D007633 3.3e-97 359.0 271 67.2
VMungo1080G1708 Vigna mungo HOM05D005955 ORTHO05D007633 3.3e-97 359.0 240 72.5
arahy.Tifrunner.gnm1.ann1.RGX0XE Arachis hypogaea HOM05D005955 ORTHO05D007633 4.3e-97 358.6 238 73.1
Peaxi162Scf01732g00026 Petunia axillaris HOM05D005955 ORTHO05D007633 7.3e-97 357.8 255 71.0
Phvul.005G029600 Phaseolus vulgaris HOM05D005955 ORTHO05D007633 7.3e-97 357.8 261 69.0
Hma1.2p1_1251F.1_g270440 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 1.2e-96 357.1 256 69.9
Dinv09262 Davidia involucrata HOM05D005955 ORTHO05D007633 3.6e-96 355.5 256 68.8
CSS0025918 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 4.7e-96 355.1 257 68.9
CANSAT56G4499 Cannabis sativa HOM05D005955 ORTHO05D007633 6.1e-96 354.8 249 73.1
Sopen11g001560 Solanum pennellii HOM05D005955 ORTHO05D007633 6.1e-96 354.8 240 71.2
Prupe.2G032200 Prunus persica HOM05D005955 ORTHO05D007633 8.0e-96 354.4 267 67.4
Eucgr.G03245 Eucalyptus grandis HOM05D005955 ORTHO05D007633 1.0e-95 354.0 264 67.0
PGSC0003DMG401003979 Solanum tuberosum HOM05D005955 ORTHO05D007633 1.4e-95 353.6 240 71.2
Solyc11g005590.1 Solanum lycopersicum HOM05D005955 ORTHO05D007633 2.3e-95 352.8 258 66.7
Gohir.A05G401400 Gossypium hirsutum HOM05D005955 ORTHO05D007633 3.1e-95 352.4 253 69.6
TAR369G0753 Trochodendron aralioides HOM05D005955 ORTHO05D007633 3.1e-95 352.4 260 66.9
EL10Ac2g02824 Beta vulgaris HOM05D005955 ORTHO05D007633 5.2e-95 351.7 268 66.4
MBI13_g36285_MAGBIO Magnolia biondii HOM05D005955 ORTHO05D007633 1.5e-94 350.1 256 67.2
Actinidia02255 Actinidia chinensis HOM05D005955 ORTHO05D007633 2.0e-94 349.7 257 66.9
FAN03G1179 Fragaria x ananassa HOM05D005955 ORTHO05D007633 2.0e-94 349.7 241 71.0
Cfa010889 Carpinus fangiana HOM05D005955 ORTHO05D007633 2.6e-94 349.4 232 74.6
Aqoxy2G00337 Aquilegia oxysepala HOM05D005955 ORTHO05D007633 3.4e-94 349.0 245 69.0
FAN10G0293 Fragaria x ananassa HOM05D005955 ORTHO05D007633 3.4e-94 349.0 241 71.0
FvH4_7g02750 Fragaria vesca HOM05D005955 ORTHO05D007633 4.4e-94 348.6 241 71.0
FAN06G1602 Fragaria x ananassa HOM05D005955 ORTHO05D007633 4.4e-94 348.6 241 71.0
Sed0001833 Sechium edule HOM05D005955 ORTHO05D007633 4.4e-94 348.6 240 70.8
CsaV3_5G036650 Cucumis sativus L. HOM05D005955 ORTHO05D007633 5.8e-94 348.2 255 67.1
ClCG05G026720 Citrullus lanatus HOM05D005955 ORTHO05D007633 7.5e-94 347.8 255 66.7
TPR.G17810 Trifolium pratense HOM05D005955 ORTHO05D007633 7.5e-94 347.8 284 63.4
RcHm_v2.0_Chr1g0322011 Rosa chinensis HOM05D005955 ORTHO05D007633 9.8e-94 347.4 256 69.5
AUR62026845 Chenopodium quinoa HOM05D005955 ORTHO05D007633 1.7e-93 346.7 255 66.7
Migut.O00720 Erythranthe guttata HOM05D005955 ORTHO05D007633 4.9e-93 345.1 251 68.5
PGR031G3892 Punica granatum HOM05D005955 ORTHO05D007633 6.4e-93 344.7 256 68.0
vmacro12691 Vaccinium macrocarpon HOM05D005955 ORTHO05D007633 6.4e-93 344.7 247 69.6
Gorai.012G017000 Gossypium raimondii HOM05D005955 ORTHO05D007633 8.3e-93 344.4 298 61.1
Cc02_g29700 Coffea canephora HOM05D005955 ORTHO05D007633 1.1e-92 344.0 253 66.8
Migut.N01830 Erythranthe guttata HOM05D005955 ORTHO05D007633 1.1e-92 344.0 251 69.3
Gohir.D04G013700 Gossypium hirsutum HOM05D005955 ORTHO05D007633 2.4e-92 342.8 299 60.5
Rhsim01G0123700 Rhododendron simsii HOM05D005955 ORTHO05D007633 2.4e-92 342.8 244 69.7
SGA_v2.0_scaffold232G43514 Striga asiatica HOM05D005955 ORTHO05D007633 3.2e-92 342.4 256 66.4
HPP92_025011 Vanilla planifolia HOM05D005955 ORTHO05D007633 1.6e-91 340.1 237 67.9
MSTRG.5061 Avicennia marina HOM05D005955 ORTHO05D007633 2.7e-91 339.3 244 69.3
unitig_8.g4774 Utricularia gibba HOM05D005955 ORTHO05D007633 7.8e-91 337.8 245 67.3
PSO339G4535 Papaver somniferum HOM05D005955 ORTHO05D007633 3.0e-90 335.9 242 69.0
PSO384G0859 Papaver somniferum HOM05D005955 ORTHO05D007633 3.9e-90 335.5 238 69.3
ECA248G0357 Erigeron canadensis HOM05D005955 ORTHO05D007633 2.5e-89 332.8 248 68.5
Lj3g0013196 Lotus japonicus HOM05D005955 ORTHO05D007633 2.5e-89 332.8 238 68.5
Nitab4.5_0000320g0120 Nicotiana tabacum HOM05D005955 ORTHO05D007633 4.3e-89 332.0 323 55.1
HanXRQChr11g0341831 Helianthus annuus HOM05D005955 ORTHO05D007633 5.6e-89 331.6 242 69.4
Ah.10g030640 Amaranthus hybridus HOM05D000390 ORTHO05D000577 2.8e-88 329.3 248 67.7
COL.COLO4_21458 Corchorus olitorius HOM05D005955 ORTHO05D007633 2.8e-88 329.3 218 72.9
Zm00001eb329830 Zea mays HOM05D005955 ORTHO05D007633 3.6e-88 328.9 240 63.8
ATR0075G002 Amborella trichopoda HOM05D005955 ORTHO05D007633 3.4e-86 322.4 257 63.8
Hund15721 Selenicereus undatus HOM05D005955 ORTHO05D007633 2.4e-84 316.2 310 55.2
CSS0041352 Camellia sinensis var. sinensis HOM05D005955 ORTHO05D007633 4.1e-84 315.5 218 71.1
CAN.G476.5 Capsicum annuum HOM05D005955 ORTHO05D007633 4.1e-84 315.5 218 70.2
Lsat_1_v5_gn_1_114801 Lactuca sativa HOM05D005955 ORTHO05D007633 2.1e-83 313.2 234 68.4
Lj7A580T60 Lonicera japonica HOM05D005955 ORTHO05D007633 2.1e-83 313.2 221 69.2
Sc10g0004360 Simmondsia chinensis HOM05D005955 ORTHO05D007633 2.1e-83 313.2 220 68.6
Oeu015683.2 Olea europaea HOM05D005955 ORTHO05D007633 6.0e-83 311.6 221 69.2
MELO3C012462.2 Cucumis melo HOM05D005955 ORTHO05D007633 1.1e-81 307.4 228 66.2
DCAR_031830 Daucus carota HOM05D005955 ORTHO05D007633 7.3e-81 304.7 219 68.0
Hma1.2p1_1251F.1_g270450 Hydrangea macrophylla HOM05D005955 ORTHO05D007633 7.6e-78 294.7 209 70.3
Nn2g14899 Nelumbo nucifera HOM05D005955 ORTHO05D007633 7.1e-76 288.1 211 67.8
Os07g0659700 Oryza sativa ssp. japonica HOM05D005955 ORTHO05D007633 2.4e-71 273.1 207 63.8
arahy.Tifrunner.gnm1.ann1.NJCB22 Arachis hypogaea HOM05D005955 ORTHO05D007633 1.5e-70 270.4 314 51.3
SEGI_28535 Sequoiadendron giganteum HOM05D005955 ORTHO05D007633 3.2e-68 262.7 229 59.8
Atru.chr12.1174 Acer truncatum HOM05D005955 ORTHO05D007633 1.7e-66 256.9 186 69.9
AagrBONN_evm.TU.Sc2ySwM_344.4523 Anthoceros agrestis HOM05D005955 ORTHO05D007633 1.1e-65 254.2 249 51.0
BolC8t50572H Brassica oleracea HOM05D005955 ORTHO05D007633 2.5e-65 253.1 146 86.3
BraA09t40201Z Brassica rapa HOM05D005955 ORTHO05D007633 5.6e-65 251.9 146 87.7
BolC8t50570H Brassica oleracea HOM05D005955 ORTHO05D007633 1.3e-64 250.8 146 85.6
SMO172G0212 Selaginella moellendorffii HOM05D005955 ORTHO05D007633 1.4e-60 237.3 243 50.2
Dinv09283 Davidia involucrata HOM05D005955 ORTHO05D007633 2.4e-60 236.5 176 67.0
Pp3c5_2560 Physcomitrium patens HOM05D005955 ORTHO05D007633 3.2e-60 236.1 248 50.8
CDE12G0962 Ceratophyllum demersum HOM05D005955 ORTHO05D007633 2.7e-59 233.0 152 72.4
CARHR164380 Cardamine hirsuta HOM05D005955 ORTHO05D007633 3.6e-56 222.6 126 89.7
CBR_g30624 Chara braunii HOM05D005955 ORTHO05D007633 5.5e-52 208.8 239 46.4
Manes.08G167250 Manihot esculenta HOM05D005955 ORTHO05D007633 3.1e-47 193.0 143 67.8
C08p29620 Brassica napus HOM05D005955 ORTHO05D007633 2.5e-44 183.3 103 86.4
AUR62037202 Chenopodium quinoa HOM05D005955 ORTHO05D007633 1.2e-43 181.0 147 61.2
Ciclev10002701m.g Citrus clementina HOM05D005955 ORTHO05D007633 8.7e-42 174.9 185 53.5
AUR62037203 Chenopodium quinoa HOM05D005955 ORTHO05D007633 7.4e-41 171.8 108 72.2
Manes.11G001251 Manihot esculenta HOM05D005955 ORTHO05D007633 6.5e-37 158.7 124 66.1
Psat7g193960 Pisum sativum HOM05D005955 ORTHO05D007633 3.5e-35 152.9 96 77.1
CANSAT01G1797 Cannabis sativa HOM05D005955 ORTHO05D007633 5.3e-31 139.0 95 71.6
Nn8g40481 Nelumbo nucifera HOM05D005955 ORTHO05D007633 6.3e-24 115.5 84 63.1
Migut.N01795 Erythranthe guttata HOM05D005955 ORTHO05D007633 6.1e-19 99.0 110 53.6
TPR.G7208 Trifolium pratense HOM05D005955 ORTHO05D007633 3.3e-17 93.2 47 87.2
BcaC08g45413 Brassica carinata HOM05D005955 ORTHO05D007633 4.4e-17 92.8 124 49.2
BcaB05g22681 Brassica carinata HOM05D005955 ORTHO05D007633 1.7e-16 90.9 124 49.2
PRCOL_00001745 Prasinoderma coloniale HOM05D005955 ORTHO05D007633 9.1e-15 85.1 172 32.0
BolC4t25378H Brassica oleracea HOM05D005955 ORTHO05D007633 4.4e-09 66.2 51 70.6


User provided reference genes

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