Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G54130 Arabidopsis thaliana HOM05D005750 ORTHO05D007126 2.4e-156 555.4 281 100.0
AL5G35150 Arabidopsis lyrata HOM05D005750 ORTHO05D007126 2.4e-148 528.9 284 95.1
CARHR164010 Cardamine hirsuta HOM05D005750 ORTHO05D007126 8.9e-143 510.4 284 91.5
Carub.0005s2072 Capsella rubella HOM05D005750 ORTHO05D007126 2.0e-142 509.2 282 92.2
Thhalv10010608m.g Eutrema salsugineum HOM05D005750 ORTHO05D007126 4.6e-139 498.0 283 88.7
Sp5g08260 Schrenkiella parvula HOM05D005750 ORTHO05D007126 1.3e-136 490.0 283 87.6
BcaC02g09095 Brassica carinata HOM05D005750 ORTHO05D007126 6.2e-136 487.6 286 88.1
BolC4t25415H Brassica oleracea HOM05D005750 ORTHO05D007126 1.4e-135 486.5 283 88.0
C04p38380 Brassica napus HOM05D005750 ORTHO05D007126 1.8e-135 486.1 286 88.1
BcaB02g08472 Brassica carinata HOM05D005750 ORTHO05D007126 4.9e-133 478.0 287 87.5
Aa31sc171G20 Aethionema arabicum HOM05D005750 ORTHO05D007126 2.7e-131 472.2 282 85.8
A09p47130 Brassica napus HOM05D005750 ORTHO05D007126 3.0e-130 468.8 287 84.7
BraA09t40175Z Brassica rapa HOM05D005750 ORTHO05D007126 3.0e-130 468.8 287 84.7
C08p29390 Brassica napus HOM05D005750 ORTHO05D007126 6.7e-130 467.6 287 84.7
BolC8t50540H Brassica oleracea HOM05D005750 ORTHO05D007126 6.7e-130 467.6 287 84.7
A04p05670 Brassica napus HOM05D005750 ORTHO05D007126 1.9e-129 466.1 288 85.4
BraA04t16263Z Brassica rapa HOM05D005750 ORTHO05D007126 3.3e-129 465.3 286 85.0
THA.LOC104823389 Tarenaya hassleriana HOM05D005750 ORTHO05D007126 5.5e-124 448.0 285 80.7
CANSAT35G0049 Cannabis sativa HOM05D005750 ORTHO05D007126 6.1e-107 391.3 280 72.1
Ciclev10012396m.g Citrus clementina HOM05D005750 ORTHO05D007126 6.1e-107 391.3 280 72.9
BcaB01g00216 Brassica carinata HOM05D005750 ORTHO05D007126 7.9e-107 391.0 208 88.9
Duzib128G1738 Durio zibethinus HOM05D005750 ORTHO05D007126 1.0e-106 390.6 279 73.5
Gohir.A01G224900 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.0e-106 390.6 265 73.2
Gohir.D01G214500 Gossypium hirsutum HOM05D005750 ORTHO05D007126 1.0e-106 390.6 265 73.2
Duzib093G0788 Durio zibethinus HOM05D005750 ORTHO05D007126 1.8e-106 389.8 268 74.6
Gorai.002G260600 Gossypium raimondii HOM05D005750 ORTHO05D007126 5.1e-106 388.3 265 72.8
Lj3g0021719 Lotus japonicus HOM05D005750 ORTHO05D007126 4.3e-105 385.2 268 75.0
Thecc.05G023200 Theobroma cacao HOM05D005750 ORTHO05D007126 4.3e-105 385.2 281 70.8
arahy.Tifrunner.gnm1.ann1.CU0EG8 Arachis hypogaea HOM05D005750 ORTHO05D007126 1.6e-104 383.3 281 70.5
Prupe.6G269800 Prunus persica HOM05D005750 ORTHO05D007126 1.6e-104 383.3 262 76.0
Lalb_Chr07g0193351 Lupinus albus HOM05D005750 ORTHO05D007126 2.2e-104 382.9 268 75.0
MD04G1146200 Malus domestica HOM05D005750 ORTHO05D007126 4.8e-104 381.7 262 75.2
RcHm_v2.0_Chr3g0463971 Rosa chinensis HOM05D005750 ORTHO05D007126 1.1e-103 380.6 271 72.7
MD12G1159400 Malus domestica HOM05D005750 ORTHO05D007126 1.8e-103 379.8 268 73.9
Cpa.g.sc56.104 Carica papaya HOM05D005750 ORTHO05D007126 3.1e-103 379.0 283 70.7
COL.COLO4_14617 Corchorus olitorius HOM05D005750 ORTHO05D007126 3.1e-103 379.0 305 66.9
Atru.chr8.2137 Acer truncatum HOM05D005750 ORTHO05D007126 6.9e-103 377.9 258 74.4
FvH4_6g12170 Fragaria vesca HOM05D005750 ORTHO05D007126 1.5e-102 376.7 279 71.0
FAN09G4178 Fragaria x ananassa HOM05D005750 ORTHO05D007126 1.5e-102 376.7 279 71.0
FAN02G3889 Fragaria x ananassa HOM05D005750 ORTHO05D007126 2.6e-102 375.9 280 70.4
Dinv37089 Davidia involucrata HOM05D005750 ORTHO05D007126 4.5e-102 375.2 279 71.7
FAN14G0046 Fragaria x ananassa HOM05D005750 ORTHO05D007126 4.5e-102 375.2 279 70.6
FAN14G1750 Fragaria x ananassa HOM05D005750 ORTHO05D007126 4.5e-102 375.2 279 70.6
arahy.Tifrunner.gnm1.ann1.2Q187C Arachis hypogaea HOM05D005750 ORTHO05D007126 2.2e-101 372.9 281 69.0
Dinv35517 Davidia involucrata HOM05D005750 ORTHO05D007126 6.5e-101 371.3 277 69.7
TPR.G5219 Trifolium pratense HOM05D005750 ORTHO05D007126 6.5e-101 371.3 265 73.6
CiPaw.09G205200 Carya illinoinensis HOM05D005750 ORTHO05D007126 1.1e-100 370.5 283 69.6
ClCG10G021760 Citrullus lanatus HOM05D005750 ORTHO05D007126 2.5e-100 369.4 264 73.1
MELO3C009196.2 Cucumis melo HOM05D005750 ORTHO05D007126 2.5e-100 369.4 264 73.1
CsaV3_3G034210 Cucumis sativus L. HOM05D005750 ORTHO05D007126 4.2e-100 368.6 264 72.7
Lj2A78G34 Lonicera japonica HOM05D005750 ORTHO05D007126 4.2e-100 368.6 275 71.6
vmacro20231 Vaccinium macrocarpon HOM05D005750 ORTHO05D007126 4.6e-99 365.2 260 73.1
Glyma.01G110900 Glycine max HOM05D005750 ORTHO05D007126 6.1e-99 364.8 280 70.4
Phvul.010G008000 Phaseolus vulgaris HOM05D005750 ORTHO05D007126 6.1e-99 364.8 260 73.1
VMungo0331G1407 Vigna mungo HOM05D005750 ORTHO05D007126 6.1e-99 364.8 260 73.5
Manes.09G101500 Manihot esculenta HOM05D005750 ORTHO05D007126 1.0e-98 364.0 280 66.8
Sed0027096 Sechium edule HOM05D005750 ORTHO05D007126 1.4e-98 363.6 261 73.9
Actinidia13787 Actinidia chinensis HOM05D005750 ORTHO05D007126 1.8e-98 363.2 260 71.5
TWI53G0977 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 3.9e-98 362.1 282 68.8
CSS0046643 Camellia sinensis var. sinensis HOM05D005750 ORTHO05D007126 8.8e-98 360.9 263 71.9
Medtr4g014710 Medicago truncatula HOM05D005750 ORTHO05D007126 8.8e-98 360.9 280 69.3
DCAR_028833 Daucus carota HOM05D005750 ORTHO05D007126 1.1e-97 360.5 285 68.1
Psat7g247000 Pisum sativum HOM05D005750 ORTHO05D007126 1.1e-97 360.5 281 69.0
Aqoxy1G00732 Aquilegia oxysepala HOM05D005750 ORTHO05D007126 2.0e-97 359.8 270 69.6
PGR031G0365 Punica granatum HOM05D005750 ORTHO05D007126 3.3e-97 359.0 271 69.4
Hund15288 Selenicereus undatus HOM05D005750 ORTHO05D007126 3.3e-97 359.0 275 69.1
MBI14_g32934_MAGBIO Magnolia biondii HOM05D005750 ORTHO05D007126 7.4e-97 357.8 260 71.2
Ah.11g045300 Amaranthus hybridus HOM05D005750 ORTHO05D007126 1.3e-96 357.1 265 69.1
QL07p036167 Quercus lobata HOM05D005750 ORTHO05D007126 1.3e-96 357.1 279 69.5
Potri.016G110300 Populus trichocarpa HOM05D005750 ORTHO05D007126 1.7e-96 356.7 280 67.5
CAN.G351.8 Capsicum annuum HOM05D005750 ORTHO05D007126 2.8e-96 355.9 262 70.2
TWI74G1070 Tripterygium wilfordii HOM05D005750 ORTHO05D007126 2.8e-96 355.9 265 70.2
Nitab4.5_0000119g0240 Nicotiana tabacum HOM05D005750 ORTHO05D007126 3.7e-96 355.5 277 67.9
EL10Ac5g11550 Beta vulgaris HOM05D005750 ORTHO05D007126 4.8e-96 355.1 262 70.6
Eucgr.B02764 Eucalyptus grandis HOM05D005750 ORTHO05D007126 4.8e-96 355.1 272 68.0
TAR636G2178 Trochodendron aralioides HOM05D005750 ORTHO05D007126 8.2e-96 354.4 277 67.1
Sc01g0006740 Simmondsia chinensis HOM05D005750 ORTHO05D007126 5.3e-95 351.7 262 69.5
AUR62042943 Chenopodium quinoa HOM05D005750 ORTHO05D007126 9.1e-95 350.9 262 70.2
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 1.2e-94 350.5 262 69.8
Peaxi162Scf00014g00091 Petunia axillaris HOM05D005750 ORTHO05D007126 2.0e-94 349.7 262 69.1
Glyma.03G076500 Glycine max HOM05D005750 ORTHO05D007126 4.5e-94 348.6 294 66.0
Migut.J00232 Erythranthe guttata HOM05D005750 ORTHO05D007126 7.7e-94 347.8 249 71.1
GSVIVG01034019001 Vitis vinifera HOM05D005750 ORTHO05D007126 7.7e-94 347.8 284 65.5
Cc06_g01740 Coffea canephora HOM05D005750 ORTHO05D007126 5.0e-93 345.1 276 67.4
Lsat_1_v5_gn_8_99481 Lactuca sativa HOM05D005750 ORTHO05D007126 5.0e-93 345.1 213 78.4
TAR623G1708 Trochodendron aralioides HOM05D005750 ORTHO05D007126 3.2e-92 342.4 268 66.8
PSO339G6575 Papaver somniferum HOM05D005750 ORTHO05D007126 2.1e-91 339.7 259 66.8
PSO384G4196 Papaver somniferum HOM05D005750 ORTHO05D007126 2.7e-91 339.3 260 66.2
unitig_46.g18409 Utricularia gibba HOM05D005750 ORTHO05D007126 7.9e-91 337.8 271 67.2
MSTRG.26795 Avicennia marina HOM05D005750 ORTHO05D007126 2.3e-90 336.3 272 65.1
HanXRQChr16g0510541 Helianthus annuus HOM05D005750 ORTHO05D007126 5.2e-90 335.1 273 65.9
CDE02G4717 Ceratophyllum demersum HOM05D005750 ORTHO05D007126 6.7e-90 334.7 256 66.4
Oeu004613.2 Olea europaea HOM05D005750 ORTHO05D007126 3.3e-89 332.4 312 58.7
Sed0026182 Sechium edule HOM05D005750 ORTHO05D007126 5.7e-89 331.6 261 66.7
Hma1.2p1_0763F.1_g214560 Hydrangea macrophylla HOM05D005750 ORTHO05D007126 7.4e-89 331.3 277 63.2
Os01g0851400 Oryza sativa ssp. japonica HOM05D005750 ORTHO05D007126 3.7e-88 328.9 267 65.2
Rhsim05G0204700 Rhododendron simsii HOM05D005750 ORTHO05D007126 1.8e-87 326.6 292 61.6
Potri.006G095700 Populus trichocarpa HOM05D005750 ORTHO05D007126 9.1e-87 324.3 226 71.7
Sabra16G0106800 Salix brachista HOM05D005750 ORTHO05D007126 9.1e-87 324.3 281 63.0
Sabra06G0073600 Salix brachista HOM05D005750 ORTHO05D007126 1.6e-86 323.6 321 56.4
Haze_20940 Corylus avellana HOM05D005750 ORTHO05D007126 3.5e-86 322.4 262 66.4
Zm00001eb367490 Zea mays HOM05D005750 ORTHO05D007126 1.3e-85 320.5 273 61.9
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 2.9e-85 319.3 203 74.4
Zm00001eb147810 Zea mays HOM05D005750 ORTHO05D007126 1.0e-82 310.8 273 61.5
SEGI_00199 Sequoiadendron giganteum HOM05D005750 ORTHO05D007126 7.5e-81 304.7 275 58.2
Gohir.D04G128250 Gossypium hirsutum HOM05D005750 ORTHO05D007126 4.0e-74 282.3 248 62.9
Actinidia29137 Actinidia chinensis HOM05D005750 ORTHO05D007126 9.8e-73 277.7 236 64.8
CiPaw.10G154000 Carya illinoinensis HOM05D005750 ORTHO05D007126 4.1e-71 272.3 271 57.6
Gorai.012G111300 Gossypium raimondii HOM05D005750 ORTHO05D007126 7.0e-71 271.6 265 59.2
HPP92_018186 Vanilla planifolia HOM05D005750 ORTHO05D007126 1.9e-68 263.5 261 54.4
SGA_v2.0_scaffold85G26769 Striga asiatica HOM05D005750 ORTHO05D007126 5.5e-68 261.9 214 63.1
Ca_23809_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 9.5e-68 261.2 184 72.8
TPR.G5190 Trifolium pratense HOM05D005750 ORTHO05D007126 1.2e-67 260.8 237 58.2
ECA236G1744 Erigeron canadensis HOM05D005750 ORTHO05D007126 4.4e-65 252.3 206 65.5
Nn2g13588 Nelumbo nucifera HOM05D005750 ORTHO05D007126 7.0e-63 245.0 178 70.2
AagrBONN_evm.TU.Sc2ySwM_344.3267 Anthoceros agrestis HOM05D005750 ORTHO05D007126 2.8e-59 233.0 213 55.9
AUR62025787 Chenopodium quinoa HOM05D005750 ORTHO05D007126 2.3e-58 229.9 177 68.4
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 3.0e-58 229.6 277 46.9
PGSC0003DMG400019130 Solanum tuberosum HOM05D005750 ORTHO05D007126 1.3e-56 224.2 177 65.5
Pp3c7_8520 Physcomitrium patens HOM05D005750 ORTHO05D007126 2.9e-56 223.0 248 46.8
Solyc10g086770.3 Solanum lycopersicum HOM05D005750 ORTHO05D007126 4.6e-54 215.7 177 65.0
SMO203G0145 Selaginella moellendorffii HOM05D005750 ORTHO05D007126 2.8e-51 206.5 170 58.2
Nitab4.5_0006439g0020 Nicotiana tabacum HOM05D005750 ORTHO05D007126 1.5e-44 184.1 116 78.4
Cre11.g475450 Chlamydomonas reinhardtii HOM05D005750 ORTHO05D007126 1.6e-43 180.6 210 46.7
TAR636G1840 Trochodendron aralioides HOM05D005750 ORTHO05D007126 2.8e-35 153.3 236 43.2
MCO10G202 Micromonas commoda HOM05D005750 ORTHO05D007126 2.4e-34 150.2 285 36.8
PRCOL_00002333 Prasinoderma coloniale HOM05D005750 ORTHO05D007126 6.6e-29 132.1 275 33.8
TAR402G0002 Trochodendron aralioides HOM05D005750 ORTHO05D007126 8.7e-29 131.7 88 78.4
Haze_26299 Corylus avellana HOM05D005750 ORTHO05D007126 6.9e-26 122.1 171 38.6
Ca_23812_v3 Cicer arietinum L. HOM05D005750 ORTHO05D007126 2.2e-24 117.1 83 74.7
A04p05660 Brassica napus HOM05D005750 ORTHO05D007126 6.6e-21 105.5 52 94.2
ATR0618G451 Amborella trichopoda HOM05D005750 ORTHO05D007126 4.3e-20 102.8 57 84.2
Nn2g11345 Nelumbo nucifera HOM05D005750 ORTHO05D007126 1.6e-19 100.9 54 87.0
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 1.5e-09 67.8 180 27.2
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 2.6e-09 67.0 182 30.8
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 2.2e-08 63.9 184 27.7
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 2.2e-08 63.9 185 28.6
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 3.8e-08 63.2 176 27.8
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 4.9e-08 62.8 180 28.9
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 6.4e-08 62.4 188 29.3
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 6.4e-08 62.4 175 28.6
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 6.4e-08 62.4 175 28.6
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 8.4e-08 62.0 173 30.1
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 8.4e-08 62.0 179 28.5
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.1e-07 61.6 176 27.8
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 1.4e-07 61.2 187 28.9
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 1.9e-07 60.8 152 27.0
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 2.4e-07 60.5 178 28.1
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 3.2e-07 60.1 173 28.9
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 3.2e-07 60.1 183 26.2
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 5.5e-07 59.3 177 26.0
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 5.5e-07 59.3 177 27.7
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 5.5e-07 59.3 180 27.8
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 7.1e-07 58.9 180 27.2
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 7.1e-07 58.9 180 27.2
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 7.1e-07 58.9 178 29.8
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 9.3e-07 58.5 184 27.7
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 9.3e-07 58.5 205 26.3
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 9.3e-07 58.5 152 29.6
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 9.3e-07 58.5 177 29.9
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 9.3e-07 58.5 186 26.3
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 1.6e-06 57.8 154 27.9
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.6e-06 57.8 195 26.7
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 2.1e-06 57.4 178 28.1
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 2.1e-06 57.4 178 27.0
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 2.7e-06 57.0 182 26.9
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 3.5e-06 56.6 185 28.6
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 6.0e-06 55.8 180 26.1
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 7.9e-06 55.5 189 27.0
FvH4_5g19731 Fragaria vesca HOM05D005750 ORTHO05D035649 7.9e-06 55.5 56 57.1


User provided reference genes

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