Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G53270 Arabidopsis thaliana HOM05D004374 ORTHO05D005430 7.1e-156 553.9 281 100.0
AL5G34180 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 1.1e-135 486.9 300 83.7
AL5G21410 Arabidopsis lyrata HOM05D004374 ORTHO05D005430 2.4e-135 485.7 281 86.5
Carub.0005s1981 Capsella rubella HOM05D004374 ORTHO05D005430 2.1e-128 462.6 281 82.2
A07p21500 Brassica napus HOM05D004374 ORTHO05D005430 1.7e-117 426.4 288 76.7
BolC6t37295H Brassica oleracea HOM05D004374 ORTHO05D005430 3.8e-117 425.2 286 77.3
C06p21110 Brassica napus HOM05D004374 ORTHO05D005430 4.9e-117 424.9 288 76.7
BcaB02g07796 Brassica carinata HOM05D004374 ORTHO05D005430 8.4e-117 424.1 282 77.0
BraA07t29837Z Brassica rapa HOM05D004374 ORTHO05D005430 3.2e-116 422.2 288 76.0
Thhalv10010555m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 1.6e-115 419.9 284 76.8
Sp1g13120 Schrenkiella parvula HOM05D004374 ORTHO05D005430 3.7e-112 408.7 294 73.1
Carub.0001s3232 Capsella rubella HOM05D004374 ORTHO05D005430 1.1e-105 387.1 282 72.7
Sp5g09070 Schrenkiella parvula HOM05D004374 ORTHO05D005430 1.5e-102 376.7 244 79.1
Thhalv10000991m.g Eutrema salsugineum HOM05D004374 ORTHO05D005430 5.5e-100 368.2 279 70.3
Aa31LG9G14420 Aethionema arabicum HOM05D004374 ORTHO05D005430 6.1e-99 364.8 306 65.7
THA.LOC104826552 Tarenaya hassleriana HOM05D004374 ORTHO05D005430 1.3e-93 347.1 289 63.7
Ciclev10032301m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.1e-87 327.4 288 58.0
Cpa.g.sc46.39 Carica papaya HOM05D004374 ORTHO05D005430 1.2e-86 323.9 283 58.7
Ciclev10002076m.g Citrus clementina HOM05D004374 ORTHO05D005430 1.0e-85 320.9 288 56.2
QL02p089838 Quercus lobata HOM05D004374 ORTHO05D005430 4.0e-82 308.9 258 59.7
Thecc.09G131900 Theobroma cacao HOM05D004374 ORTHO05D005430 6.7e-82 308.1 286 55.2
Potri.006G065800 Populus trichocarpa HOM05D004374 ORTHO05D005430 8.8e-82 307.8 252 59.1
Prupe.1G493600 Prunus persica HOM05D004374 ORTHO05D005430 1.2e-81 307.4 292 52.4
TWI34G0112 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.2e-81 307.4 286 54.2
Duzib168G1544 Durio zibethinus HOM05D004374 ORTHO05D005430 4.4e-81 305.4 281 55.9
CANSAT11G1308 Cannabis sativa HOM05D004374 ORTHO05D005430 2.2e-80 303.1 293 54.6
TWI34G1386 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.1e-79 300.8 288 53.5
MD05G1013300 Malus domestica HOM05D004374 ORTHO05D005430 1.4e-79 300.4 281 53.4
ClCG11G003340 Citrullus lanatus HOM05D004374 ORTHO05D005430 2.4e-79 299.7 288 52.8
Atru.chr12.84 Acer truncatum HOM05D004374 ORTHO05D005430 3.1e-79 299.3 281 54.1
Manes.06G047300 Manihot esculenta HOM05D004374 ORTHO05D005430 7.0e-79 298.1 274 54.4
TAR626G1960 Trochodendron aralioides HOM05D004374 ORTHO05D005430 7.0e-79 298.1 280 52.9
Cfa008808 Carpinus fangiana HOM05D004374 ORTHO05D005430 1.6e-78 297.0 249 58.2
Gohir.D05G015500 Gossypium hirsutum HOM05D004374 ORTHO05D005430 7.7e-78 294.7 285 52.6
Gorai.009G015600 Gossypium raimondii HOM05D004374 ORTHO05D005430 1.7e-77 293.5 285 52.3
CsaV3_2G003190 Cucumis sativus L. HOM05D002754 ORTHO05D003271 2.2e-77 293.1 288 52.1
Sed0026824 Sechium edule HOM05D004374 ORTHO05D005430 3.8e-77 292.4 269 54.6
Rhsim01G0061800 Rhododendron simsii HOM05D004374 ORTHO05D005430 1.1e-76 290.8 273 51.6
Hma1.2p1_0343F.1_g130960 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.5e-76 289.7 283 51.6
Ca_06940_v3 Cicer arietinum L. HOM05D004374 ORTHO05D005430 3.2e-76 289.3 282 53.2
Sabra06G0048000 Salix brachista HOM05D004374 ORTHO05D005430 4.2e-76 288.9 286 52.1
MELO3C004466.2 Cucumis melo HOM05D004374 ORTHO05D005430 7.2e-76 288.1 288 52.1
PGR042G2992 Punica granatum HOM05D004374 ORTHO05D005430 9.4e-76 287.7 295 49.5
Dinv41475 Davidia involucrata HOM05D004374 ORTHO05D005430 1.2e-75 287.3 291 50.5
Medtr4g115320 Medicago truncatula HOM05D004374 ORTHO05D005430 1.2e-75 287.3 273 53.8
Lalb_Chr12g0197301 Lupinus albus HOM05D004374 ORTHO05D005430 1.6e-75 287.0 280 51.4
Hma1.2p1_1220F.1_g268070 Hydrangea macrophylla HOM05D004374 ORTHO05D005430 2.1e-75 286.6 283 51.6
GSVIVG01015588001 Vitis vinifera HOM05D004374 ORTHO05D005430 2.1e-75 286.6 284 52.1
arahy.Tifrunner.gnm1.ann1.RD7K84 Arachis hypogaea HOM05D004374 ORTHO05D005430 2.3e-74 283.1 249 54.6
arahy.Tifrunner.gnm1.ann1.QKGT17 Arachis hypogaea HOM05D004374 ORTHO05D005430 4.0e-74 282.3 249 54.6
Psat4g038960 Pisum sativum HOM05D004374 ORTHO05D005430 4.0e-74 282.3 281 52.3
Lalb_Chr13g0301591 Lupinus albus HOM05D004374 ORTHO05D005430 5.2e-74 282.0 280 52.1
Lj4g0025213 Lotus japonicus HOM05D004374 ORTHO05D005430 5.7e-73 278.5 252 56.7
Migut.K00426 Erythranthe guttata HOM05D004374 ORTHO05D005430 4.8e-72 275.4 292 48.3
Aqoxy4G00722 Aquilegia oxysepala HOM05D004374 ORTHO05D005430 6.3e-72 275.0 277 49.8
Glyma.13G159900 Glycine max HOM05D004374 ORTHO05D005430 8.3e-72 274.6 271 50.9
HanXRQChr06g0168691 Helianthus annuus HOM05D004374 ORTHO05D005430 8.3e-72 274.6 294 45.9
MSTRG.26430 Avicennia marina HOM05D004374 ORTHO05D005430 9.1e-71 271.2 274 48.5
TPR.G24785 Trifolium pratense HOM05D004374 ORTHO05D005430 1.2e-70 270.8 251 53.0
ECA240G2062 Erigeron canadensis HOM05D004374 ORTHO05D005430 3.5e-70 269.2 276 48.2
Haze_11824 Corylus avellana HOM05D004374 ORTHO05D005430 7.7e-70 268.1 292 50.7
TAR383G0672 Trochodendron aralioides HOM05D004374 ORTHO05D005430 7.7e-70 268.1 248 53.2
SGA_v2.0_scaffold154G37188 Striga asiatica HOM05D004374 ORTHO05D005430 1.7e-69 266.9 251 51.4
Cc06_g08080 Coffea canephora HOM05D004374 ORTHO05D005430 1.1e-68 264.2 263 48.7
Dinv36480 Davidia involucrata HOM05D004374 ORTHO05D005430 1.5e-68 263.8 250 52.4
Peaxi162Scf00088g01332 Petunia axillaris HOM05D004374 ORTHO05D005430 3.2e-68 262.7 282 47.9
SGA_v2.0_scaffold138G35279 Striga asiatica HOM05D004374 ORTHO05D005430 3.2e-68 262.7 258 50.8
Phvul.003G168700 Phaseolus vulgaris HOM05D004374 ORTHO05D005430 5.5e-68 261.9 268 48.5
ATR0307G110 Amborella trichopoda HOM05D004374 ORTHO05D005430 6.1e-67 258.5 256 49.2
Eucgr.C01384 Eucalyptus grandis HOM05D004374 ORTHO05D005430 1.4e-66 257.3 268 49.6
SalBow1G4424 Salvia bowleyana HOM05D004374 ORTHO05D005430 1.8e-66 256.9 249 51.4
Nitab4.5_0002008g0060 Nicotiana tabacum HOM05D004374 ORTHO05D005430 2.3e-66 256.5 252 50.8
Sc18g0000370 Simmondsia chinensis HOM05D004374 ORTHO05D005430 3.0e-66 256.1 249 49.0
MBI04_g39649_MAGBIO Magnolia biondii HOM05D004374 ORTHO05D005430 4.0e-66 255.8 263 49.8
RcHm_v2.0_Chr2g0138971 Rosa chinensis HOM05D004374 ORTHO05D005430 6.8e-66 255.0 290 49.7
Lsat_1_v5_gn_7_43761 Lactuca sativa HOM05D004374 ORTHO05D005430 1.2e-65 254.2 249 49.0
Lj3g0009396 Lotus japonicus HOM05D004374 ORTHO05D005430 1.5e-65 253.8 254 53.5
vmacro15378 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.6e-65 253.1 310 42.9
VMungo1215G2312 Vigna mungo HOM05D004374 ORTHO05D005430 3.4e-65 252.7 264 48.1
FAN02G2909 Fragaria x ananassa HOM05D004374 ORTHO05D005430 9.8e-65 251.1 291 48.8
COL.COLO4_35152 Corchorus olitorius HOM05D004374 ORTHO05D005430 8.3e-64 248.1 283 48.1
FvH4_6g31820 Fragaria vesca HOM05D004374 ORTHO05D005430 8.3e-64 248.1 254 52.0
FAN14G1328 Fragaria x ananassa HOM05D004374 ORTHO05D005430 8.3e-64 248.1 254 52.0
Nn8g39541 Nelumbo nucifera HOM05D004374 ORTHO05D005430 1.1e-63 247.7 281 45.9
FAN05G4736 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.2e-62 244.2 288 47.9
Lj3g0021552 Lotus japonicus HOM05D004374 ORTHO05D005430 1.2e-62 244.2 246 53.3
Zm00001eb288690 Zea mays HOM05D004374 ORTHO05D005430 1.2e-62 244.2 269 42.8
FAN09G4040 Fragaria x ananassa HOM05D004374 ORTHO05D005430 1.6e-62 243.8 254 51.6
Sopen07g003820 Solanum pennellii HOM05D004374 ORTHO05D005430 2.0e-62 243.4 249 48.6
vmacro07719 Vaccinium macrocarpon HOM05D004374 ORTHO05D005430 2.7e-62 243.0 407 35.1
Medtr3g113180 Medicago truncatula HOM05D004374 ORTHO05D005430 3.5e-62 242.7 273 47.6
AUR62011174 Chenopodium quinoa HOM05D004374 ORTHO05D005430 1.3e-61 240.7 280 42.5
Nitab4.5_0009218g0020 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.7e-61 240.4 261 47.5
HPP92_020472 Vanilla planifolia HOM05D004374 ORTHO05D005430 2.3e-61 240.0 281 44.5
Zm00001eb030790 Zea mays HOM05D004374 ORTHO05D005430 2.3e-61 240.0 269 42.0
Zm00001eb030830 Zea mays HOM05D004374 ORTHO05D005430 2.3e-61 240.0 269 42.0
AUR62008844 Chenopodium quinoa HOM05D004374 ORTHO05D005430 2.9e-61 239.6 245 47.8
HPP92_026160 Vanilla planifolia HOM05D004374 ORTHO05D005430 3.8e-61 239.2 281 44.5
Solyc07g007940.3 Solanum lycopersicum HOM05D004374 ORTHO05D005430 5.0e-61 238.8 249 48.2
AUR62025401 Chenopodium quinoa HOM05D004374 ORTHO05D005430 8.6e-61 238.0 245 47.3
EL10Ac8g18718 Beta vulgaris HOM05D004374 ORTHO05D005430 1.5e-60 237.3 252 46.0
Nitab4.5_0005465g0010 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.3e-60 236.1 249 48.6
DCAR_017779 Daucus carota HOM05D004374 ORTHO05D005430 1.6e-59 233.8 233 49.4
CiPaw.05G118700 Carya illinoinensis HOM05D004374 ORTHO05D005430 2.1e-59 233.4 181 60.8
Os10g0493800 Oryza sativa ssp. japonica HOM05D004374 ORTHO05D005430 3.6e-59 232.6 286 41.3
PSO478G4198 Papaver somniferum HOM05D004374 ORTHO05D005430 2.9e-56 223.0 213 52.6
unitig_0.g2039 Utricularia gibba HOM05D004374 ORTHO05D005430 1.4e-55 220.7 308 38.6
CAN.G1963.3 Capsicum annuum HOM05D004374 ORTHO05D005430 2.4e-55 219.9 323 39.3
CAN.G1315.2 Capsicum annuum HOM05D004374 ORTHO05D005430 3.2e-55 219.5 249 45.4
SEGI_33846 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 5.6e-52 208.8 282 41.5
arahy.Tifrunner.gnm1.ann1.9N6VAH Arachis hypogaea HOM05D004374 ORTHO05D005430 9.8e-49 198.0 186 51.1
Gohir.A05G014400 Gossypium hirsutum HOM05D004374 ORTHO05D005430 9.8e-49 198.0 213 47.9
Lj7A483G16 Lonicera japonica HOM05D004374 ORTHO05D005430 9.8e-49 198.0 175 55.4
Lj5A680G20 Lonicera japonica HOM05D004374 ORTHO05D005430 9.2e-47 191.4 175 54.9
PSO384G0227 Papaver somniferum HOM05D004374 ORTHO05D005430 8.6e-45 184.9 206 48.1
CARHR163170 Cardamine hirsuta HOM05D004374 ORTHO05D005430 4.7e-43 179.1 171 61.4
PSO017G1812 Papaver somniferum HOM05D004374 ORTHO05D005430 1.8e-42 177.2 222 43.2
Hund26613 Selenicereus undatus HOM05D004374 ORTHO05D005430 1.1e-39 167.9 268 35.8
Potri.004G126720 Populus trichocarpa HOM05D004374 ORTHO05D005430 1.4e-39 167.5 148 56.1
SEGI_36985 Sequoiadendron giganteum HOM05D004374 ORTHO05D005430 2.1e-38 163.7 283 35.3
Potri.004G126760 Populus trichocarpa HOM05D004374 ORTHO05D005430 5.2e-34 149.1 181 47.5
CARHR163160 Cardamine hirsuta HOM05D004374 ORTHO05D005430 2.6e-33 146.7 120 65.0
PGSC0003DMG400030909 Solanum tuberosum HOM05D004374 ORTHO05D005430 7.6e-33 145.2 239 37.7
CSS0004446 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 3.2e-31 139.8 151 42.4
Oeu032455.1 Olea europaea HOM05D004374 ORTHO05D005430 1.2e-30 137.9 109 59.6
Nitab4.5_0000245g0220 Nicotiana tabacum HOM05D004374 ORTHO05D005430 3.5e-30 136.3 123 55.3
arahy.Tifrunner.gnm1.ann1.8FF2M6 Arachis hypogaea HOM05D004374 ORTHO05D005430 7.8e-30 135.2 146 45.2
Actinidia40498 Actinidia chinensis HOM05D004374 ORTHO05D005430 1.3e-29 134.4 181 39.8
AUR62013310 Chenopodium quinoa HOM05D004374 ORTHO05D005430 3.3e-28 129.8 240 33.3
CDE06G2323 Ceratophyllum demersum HOM05D004374 ORTHO05D005430 4.3e-28 129.4 284 31.3
BcaC07g39690 Brassica carinata HOM05D004374 ORTHO05D005430 9.6e-28 128.3 145 51.0
Ah.09g224840 Amaranthus hybridus HOM05D004374 ORTHO05D005430 1.1e-26 124.8 342 26.0
BcaC02g09173 Brassica carinata HOM05D004374 ORTHO05D005430 1.8e-26 124.0 102 67.6
Pp3c16_3150 Physcomitrium patens HOM05D004374 ORTHO05D005430 1.2e-25 121.3 244 31.6
Actinidia21955 Actinidia chinensis HOM05D004374 ORTHO05D005430 5.8e-25 119.0 86 68.6
Oeu032454.1 Olea europaea HOM05D004374 ORTHO05D005430 6.4e-24 115.5 135 40.7
Mapoly0001s0311 Marchantia polymorpha HOM05D004374 ORTHO05D005430 1.9e-23 114.0 244 29.5
AagrBONN_evm.TU.Sc2ySwM_228.3625 Anthoceros agrestis HOM05D004374 ORTHO05D005430 4.2e-23 112.8 242 31.0
Actinidia21954 Actinidia chinensis HOM05D004374 ORTHO05D005430 5.4e-23 112.5 126 42.9
C04p39300 Brassica napus HOM05D004374 ORTHO05D005430 9.3e-23 111.7 91 68.1
BolC4t25497H Brassica oleracea HOM05D004374 ORTHO05D005430 9.3e-23 111.7 91 68.1
C08p28500 Brassica napus HOM05D000209 ORTHO05D024195 1.2e-22 111.3 145 47.6
BolC8t50457H Brassica oleracea HOM05D000209 ORTHO05D024195 1.2e-22 111.3 145 47.6
PGSC0003DMG400020805 Solanum tuberosum HOM05D004374 ORTHO05D005430 4.6e-22 109.4 161 37.3
Hund26538 Selenicereus undatus HOM05D004374 ORTHO05D005430 8.7e-21 105.1 420 23.6
A04p15700 Brassica napus HOM05D004374 ORTHO05D040369 5.6e-20 102.4 132 49.2
Nitab4.5_0000245g0210 Nicotiana tabacum HOM05D004374 ORTHO05D005430 1.4e-18 97.8 154 36.4
TWI09G0688 Tripterygium wilfordii HOM05D004374 ORTHO05D005430 1.8e-18 97.4 257 30.4
C04p05170 Brassica napus HOM05D000111 ORTHO05D000134 4.0e-18 96.3 109 50.5
CSS0024212 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.5e-17 94.4 65 70.8
CAN.G778.6 Capsicum annuum HOM05D004374 ORTHO05D005430 3.4e-17 93.2 149 38.3
BcaB07g32803 Brassica carinata HOM05D000209 ORTHO05D000129 4.9e-16 89.4 61 72.1
SHI22473 Sapria himalayana HOM05D004374 ORTHO05D005430 1.1e-15 88.2 66 62.1
CSS0020843 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 7.1e-15 85.5 238 28.6
CSS0046554 Camellia sinensis var. sinensis HOM05D004374 ORTHO05D005430 1.6e-14 84.3 61 68.9
SMO358G0132 Selaginella moellendorffii HOM05D004374 ORTHO05D005430 7.9e-14 82.0 203 29.6
Nn8g39548 Nelumbo nucifera HOM05D004374 ORTHO05D005430 2.8e-11 73.6 103 35.9
RcHm_v2.0_Chr6g0296211 Rosa chinensis HOM05D004374 ORTHO05D005430 3.8e-08 63.2 105 43.8
Lj5C680T4 Lonicera japonica HOM05D004374 ORTHO05D005430 8.4e-08 62.0 149 30.2
MD15G1345500 Malus domestica HOM05D004374 ORTHO05D005430 1.1e-07 61.6 70 47.1
BraA09t40093Z Brassica rapa HOM05D004374 ORTHO05D005430 2.4e-07 60.5 53 60.4


User provided reference genes

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