Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 1.9e-27 125.2 65 100.0
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 1.5e-24 115.5 65 92.3
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 4.9e-20 100.5 60 83.3
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 4.9e-20 100.5 71 77.5
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 8.4e-20 99.8 61 82.0
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 2.3e-17 91.7 55 85.5
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 2.3e-17 91.7 55 85.5
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 2.3e-17 91.7 55 85.5
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 2.3e-17 91.7 55 85.5
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 8.7e-17 89.7 55 83.6
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 8.7e-17 89.7 55 83.6
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 6.9e-14 80.1 50 74.0
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 2.0e-13 78.6 45 86.7
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 2.6e-13 78.2 57 66.7
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 2.2e-12 75.1 52 69.2
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 3.8e-12 74.3 48 70.8
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 6.5e-12 73.6 55 65.5
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 2.5e-11 71.6 60 63.3
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 2.5e-11 71.6 54 61.1
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 2.5e-11 71.6 63 55.6
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 4.2e-11 70.9 63 55.6
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 5.5e-11 70.5 59 61.0
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 5.5e-11 70.5 59 61.0
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 5.5e-11 70.5 50 66.0
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 7.2e-11 70.1 61 57.4
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 7.2e-11 70.1 61 55.7
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 9.3e-11 69.7 61 55.7
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 9.3e-11 69.7 72 52.8
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 9.3e-11 69.7 50 64.0
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 1.2e-10 69.3 68 58.8
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.2e-10 69.3 49 69.4
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 1.2e-10 69.3 62 53.2
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 1.6e-10 68.9 50 64.0
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 2.1e-10 68.6 45 71.1
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 2.1e-10 68.6 50 64.0
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 2.1e-10 68.6 60 61.7
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 2.1e-10 68.6 62 59.7
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 2.1e-10 68.6 52 61.5
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 2.1e-10 68.6 61 57.4
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 2.7e-10 68.2 61 59.0
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 3.5e-10 67.8 68 51.5
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 3.5e-10 67.8 57 56.1
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 6.1e-10 67.0 47 68.1
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 6.1e-10 67.0 50 62.0
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 6.1e-10 67.0 50 62.0
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 1.0e-09 66.2 62 50.0
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.3e-09 65.9 53 56.6
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 1.8e-09 65.5 50 68.0
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 1.8e-09 65.5 48 66.7
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.8e-09 65.5 49 67.3
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 1.8e-09 65.5 50 62.0
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 2.3e-09 65.1 59 59.3
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 2.3e-09 65.1 55 65.5
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 2.3e-09 65.1 45 64.4
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 2.3e-09 65.1 52 59.6
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 3.9e-09 64.3 56 62.5
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 3.9e-09 64.3 47 63.8
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 3.9e-09 64.3 50 64.0
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 3.9e-09 64.3 48 62.5
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 5.1e-09 63.9 50 68.0
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 5.1e-09 63.9 43 67.4
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 5.1e-09 63.9 54 55.6
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 6.7e-09 63.5 51 58.8
Cpa.g.sc52.17 Carica papaya HOM05D007833 ORTHO05D009855 6.7e-09 63.5 50 64.0
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 6.7e-09 63.5 49 57.1
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 6.7e-09 63.5 50 66.0
Nitab4.5_0014943g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 6.7e-09 63.5 52 59.6
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 8.7e-09 63.2 52 55.8
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 8.7e-09 63.2 50 66.0
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.1e-08 62.8 54 53.7
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 1.1e-08 62.8 48 62.5
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 1.5e-08 62.4 51 60.8
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 1.5e-08 62.4 62 53.2
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 1.9e-08 62.0 50 58.0
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 2.5e-08 61.6 56 53.6
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 2.5e-08 61.6 50 64.0
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 3.3e-08 61.2 48 58.3
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 4.3e-08 60.8 48 56.2
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 4.3e-08 60.8 58 58.6
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 7.4e-08 60.1 50 56.0
THA.LOC109116323 Tarenaya hassleriana HOM05D007833 ORTHO05D009855 7.4e-08 60.1 48 66.7
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 9.7e-08 59.7 50 56.0
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 3.7e-07 57.8 44 65.9
Dinv11245 Davidia involucrata HOM05D003232 ORTHO05D003584 2.4e-06 55.1 50 52.0
HPP92_007464 Vanilla planifolia HOM05D027844 ORTHO05D009855 4.1e-06 54.3 50 48.0
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 9.0e-06 53.1 61 50.8


User provided reference genes

Program Settings