Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G51270 Arabidopsis thaliana HOM05D004480 ORTHO05D005546 5.1e-228 794.3 462 100.0
AL5G31690 Arabidopsis lyrata HOM05D004480 ORTHO05D005546 1.9e-222 775.8 462 91.1
Thhalv10010355m.g Eutrema salsugineum HOM05D004480 ORTHO05D005546 8.2e-210 733.8 464 90.1
Sp5g10950 Schrenkiella parvula HOM05D004480 ORTHO05D005546 8.2e-210 733.8 464 85.8
Carub.0005s1764 Capsella rubella HOM05D004480 ORTHO05D005546 6.9e-209 730.7 462 89.2
BraA03t13931Z Brassica rapa HOM05D004480 ORTHO05D005546 1.7e-207 726.1 464 83.0
BcaB01g00536 Brassica carinata HOM05D004480 ORTHO05D005546 3.2e-206 721.8 464 84.1
A03p48230 Brassica napus HOM05D004480 ORTHO05D005546 3.2e-206 721.8 464 83.2
BraA09t39892Z Brassica rapa HOM05D004480 ORTHO05D005546 3.6e-205 718.4 462 83.3
BcaC06g33042 Brassica carinata HOM05D004480 ORTHO05D005546 2.3e-204 715.7 462 81.2
C07p46260 Brassica napus HOM05D004480 ORTHO05D005546 4.3e-203 711.4 462 82.5
A09p44300 Brassica napus HOM05D004480 ORTHO05D005546 5.3e-201 704.5 462 82.5
BraA01t02261Z Brassica rapa HOM05D004480 ORTHO05D005546 1.2e-200 703.4 468 81.0
BcaNung06395 Brassica carinata HOM05D004480 ORTHO05D005546 5.9e-200 701.0 462 82.7
C01p29210 Brassica napus HOM05D004480 ORTHO05D005546 5.9e-200 701.0 462 82.7
A01p23550 Brassica napus HOM05D004480 ORTHO05D005546 1.3e-199 699.9 464 82.1
BolC1t02850H Brassica oleracea HOM05D004480 ORTHO05D005546 5.0e-199 698.0 470 80.4
CARHR160850 Cardamine hirsuta HOM05D004480 ORTHO05D005546 2.2e-194 682.6 465 85.2
BolC8t50268H Brassica oleracea HOM05D004480 ORTHO05D005546 8.5e-191 670.6 479 77.9
BcaNung00392 Brassica carinata HOM05D004480 ORTHO05D005546 1.9e-190 669.5 464 81.9
C08p26540 Brassica napus HOM05D004480 ORTHO05D005546 8.8e-188 660.6 471 78.1
BolC7t45142H Brassica oleracea HOM05D004480 ORTHO05D005546 2.4e-185 652.5 462 76.0
THA.LOC104827565 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 1.8e-177 626.3 469 74.4
BcaC09g50090 Brassica carinata HOM05D004480 ORTHO05D005546 9.1e-177 624.0 394 84.5
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 2.6e-171 605.9 382 84.6
THA.LOC104802357 Tarenaya hassleriana HOM05D004480 ORTHO05D005546 7.5e-171 604.4 335 89.0
Sed0006001 Sechium edule HOM05D004480 ORTHO05D005546 2.5e-166 589.3 478 66.5
Manes.17G005700 Manihot esculenta HOM05D004480 ORTHO05D005546 7.3e-166 587.8 474 66.2
Thecc.05G221800 Theobroma cacao HOM05D004480 ORTHO05D005546 4.7e-165 585.1 474 67.1
Migut.N03010 Erythranthe guttata HOM05D004480 ORTHO05D005546 8.0e-165 584.3 469 69.3
Sed0005158 Sechium edule HOM05D004480 ORTHO05D005546 1.4e-164 583.6 380 76.6
QL11p020579 Quercus lobata HOM05D004480 ORTHO05D005546 2.3e-164 582.8 470 66.6
CiPaw.01G203500 Carya illinoinensis HOM05D004480 ORTHO05D005546 3.0e-164 582.4 476 65.5
Gohir.A08G013400 Gossypium hirsutum HOM05D004480 ORTHO05D005546 3.0e-164 582.4 467 67.0
CsaV3_3G003300 Cucumis sativus L. HOM05D004480 ORTHO05D005546 8.9e-164 580.9 475 66.3
MD15G1320300 Malus domestica HOM05D004480 ORTHO05D005546 8.9e-164 580.9 473 65.8
Hma1.2p1_0513F.1_g169740 Hydrangea macrophylla HOM05D004480 ORTHO05D005546 1.2e-163 580.5 474 66.2
Gohir.D08G023800 Gossypium hirsutum HOM05D004480 ORTHO05D005546 1.5e-163 580.1 467 66.8
MELO3C013997.2 Cucumis melo HOM05D004480 ORTHO05D005546 2.6e-163 579.3 474 65.6
Gorai.004G019100 Gossypium raimondii HOM05D004480 ORTHO05D005546 2.6e-163 579.3 467 66.6
MD01G1035500 Malus domestica HOM05D004480 ORTHO05D005546 3.4e-163 578.9 473 66.0
MSTRG.22059 Avicennia marina HOM05D004480 ORTHO05D005546 5.7e-163 578.2 345 80.6
SGA_v2.0_scaffold19G08907 Striga asiatica HOM05D004480 ORTHO05D005546 7.5e-163 577.8 479 67.0
FAN01G1951 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.3e-162 577.0 467 66.8
Prupe.5G084300 Prunus persica HOM05D004480 ORTHO05D005546 1.3e-162 577.0 489 64.2
Dinv41802 Davidia involucrata HOM05D004480 ORTHO05D005546 1.7e-162 576.6 399 74.9
RcHm_v2.0_Chr1g0334711 Rosa chinensis HOM05D004480 ORTHO05D005546 1.7e-162 576.6 471 66.0
Cfa008538 Carpinus fangiana HOM05D004480 ORTHO05D005546 2.9e-162 575.9 476 64.3
Atru.chr11.1453 Acer truncatum HOM05D004480 ORTHO05D005546 1.8e-161 573.2 345 81.4
Atru.chr11.1483 Acer truncatum HOM05D004480 ORTHO05D005546 1.8e-161 573.2 345 81.4
FAN03G0050 Fragaria x ananassa HOM05D004480 ORTHO05D005546 3.2e-161 572.4 475 64.2
RcHm_v2.0_Chr7g0210541 Rosa chinensis HOM05D004480 ORTHO05D005546 3.2e-161 572.4 471 65.6
Cc03_g16200 Coffea canephora HOM05D004480 ORTHO05D005546 7.0e-161 571.2 472 64.6
FAN06G1845 Fragaria x ananassa HOM05D004480 ORTHO05D005546 9.2e-161 570.9 400 72.5
SGA_v2.0_scaffold25G11023 Striga asiatica HOM05D004480 ORTHO05D005546 1.2e-160 570.5 491 66.4
SalBow6G1632 Salvia bowleyana HOM05D004480 ORTHO05D005546 2.7e-160 569.3 376 78.2
PGSC0003DMG400021321 Solanum tuberosum HOM05D004480 ORTHO05D005546 2.7e-160 569.3 465 69.2
Duzib128G0969 Durio zibethinus HOM05D004480 ORTHO05D005546 3.5e-160 568.9 466 64.8
Solyc01g007120.3 Solanum lycopersicum HOM05D004480 ORTHO05D005546 3.5e-160 568.9 465 67.7
Ciclev10008180m.g Citrus clementina HOM05D004480 ORTHO05D005546 7.8e-160 567.8 481 65.3
SalBow1G2458 Salvia bowleyana HOM05D004480 ORTHO05D005546 7.8e-160 567.8 466 67.0
Sopen01g003100 Solanum pennellii HOM05D004480 ORTHO05D005546 1.0e-159 567.4 466 67.2
TAR623G1647 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.0e-159 567.4 382 75.1
TAR626G1520 Trochodendron aralioides HOM05D004480 ORTHO05D005546 1.0e-159 567.4 398 73.1
GSVIVG01038269001 Vitis vinifera HOM05D004480 ORTHO05D005546 1.0e-159 567.4 470 64.7
arahy.Tifrunner.gnm1.ann1.0BX3U4 Arachis hypogaea HOM05D004480 ORTHO05D005546 1.3e-159 567.0 465 65.8
FvH4_7g06440 Fragaria vesca HOM05D004480 ORTHO05D005546 1.7e-159 566.6 383 74.4
Nn7g35785 Nelumbo nucifera HOM05D004480 ORTHO05D005546 2.3e-159 566.2 488 63.1
CANSAT21G2297 Cannabis sativa HOM05D004480 ORTHO05D005546 3.9e-159 565.5 470 65.7
Actinidia18384 Actinidia chinensis HOM05D004480 ORTHO05D005546 6.6e-159 564.7 473 63.8
Potri.017G001100 Populus trichocarpa HOM05D004480 ORTHO05D005546 6.6e-159 564.7 472 67.6
TWI74G1000 Tripterygium wilfordii HOM05D004480 ORTHO05D005546 6.6e-159 564.7 476 68.7
CSS0010781 Camellia sinensis var. sinensis HOM05D004480 ORTHO05D005546 1.1e-158 563.9 471 66.2
FAN12G1968 Fragaria x ananassa HOM05D004480 ORTHO05D005546 1.1e-158 563.9 378 74.1
FvH4_4g10760 Fragaria vesca HOM05D004480 ORTHO05D005546 4.3e-158 562.0 466 63.9
FAN12G3644 Fragaria x ananassa HOM05D004480 ORTHO05D005546 5.6e-158 561.6 466 63.7
PGR083G0026 Punica granatum HOM05D004480 ORTHO05D005546 7.3e-158 561.2 465 64.7
PGR119G0799 Punica granatum HOM05D004480 ORTHO05D005546 7.3e-158 561.2 466 64.4
DCAR_011737 Daucus carota HOM05D004480 ORTHO05D005546 1.6e-157 560.1 337 81.3
MBI07_g30868_MAGBIO Magnolia biondii HOM05D004480 ORTHO05D005546 2.8e-157 559.3 383 72.1
Peaxi162Scf00586g00512 Petunia axillaris HOM05D004480 ORTHO05D005546 3.6e-157 558.9 346 80.3
Glyma.11G213400 Glycine max HOM05D004480 ORTHO05D005546 4.7e-157 558.5 345 79.4
Glyma.18G043300 Glycine max HOM05D004480 ORTHO05D005546 6.2e-157 558.1 465 64.1
HanXRQChr15g0465141 Helianthus annuus HOM05D004480 ORTHO05D005546 6.2e-157 558.1 463 68.0
Sc03g0007800 Simmondsia chinensis HOM05D004480 ORTHO05D005546 8.0e-157 557.8 465 65.8
Sabra17G0005500 Salix brachista HOM05D000001 ORTHO05D005546 1.4e-156 557.0 389 71.5
Ca_17076_v3 Cicer arietinum L. HOM05D004480 ORTHO05D005546 1.8e-156 556.6 467 65.1
HanXRQChr14g0458331 Helianthus annuus HOM05D004480 ORTHO05D005546 1.8e-156 556.6 463 68.9
HanXRQChr15g0464981 Helianthus annuus HOM05D004480 ORTHO05D005546 1.8e-156 556.6 330 82.4
Eucgr.H00240 Eucalyptus grandis HOM05D004480 ORTHO05D005546 4.0e-156 555.4 477 62.3
vmacro20035 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 5.2e-156 555.1 481 64.2
Psat7g090480 Pisum sativum HOM05D004480 ORTHO05D005546 6.8e-156 554.7 396 72.5
Hund12181 Selenicereus undatus HOM05D004480 ORTHO05D005546 6.8e-156 554.7 481 64.4
Nitab4.5_0002844g0040 Nicotiana tabacum HOM05D004480 ORTHO05D005546 1.2e-155 553.9 478 63.4
Phvul.001G227600 Phaseolus vulgaris HOM05D004480 ORTHO05D005546 5.8e-155 551.6 462 65.4
ECA248G1292 Erigeron canadensis HOM05D004480 ORTHO05D005546 1.3e-154 550.4 449 68.4
vmacro00734 Vaccinium macrocarpon HOM05D004480 ORTHO05D005546 6.4e-154 548.1 513 60.2
VMungo1309G1911 Vigna mungo HOM05D004480 ORTHO05D005546 6.4e-154 548.1 345 78.6
TPR.G4936 Trifolium pratense HOM05D004480 ORTHO05D005546 8.3e-154 547.7 466 66.5
Oeu019179.1 Olea europaea HOM05D004480 ORTHO05D005546 1.1e-153 547.4 524 57.8
Medtr4g094615 Medicago truncatula HOM05D004480 ORTHO05D005546 1.4e-153 547.0 466 63.1
Lalb_Chr08g0233091 Lupinus albus HOM05D004480 ORTHO05D005546 1.9e-153 546.6 471 65.8
VMungo1383G0315 Vigna mungo HOM05D004480 ORTHO05D005546 1.9e-153 546.6 403 71.0
Lj1g0018422 Lotus japonicus HOM05D004480 ORTHO05D005546 2.4e-153 546.2 470 62.3
Os01g0888700 Oryza sativa ssp. japonica HOM05D004480 ORTHO05D005546 5.4e-153 545.0 379 73.1
Zm00001eb145320 Zea mays HOM05D004480 ORTHO05D005546 2.0e-152 543.1 344 77.0
ATR0743G007 Amborella trichopoda HOM05D004480 ORTHO05D005546 7.8e-152 541.2 377 72.1
Zm00001eb365940 Zea mays HOM05D004480 ORTHO05D005546 7.8e-152 541.2 473 67.2
PSO675G8718 Papaver somniferum HOM05D004480 ORTHO05D005546 2.5e-150 536.2 343 76.1
PSO732G0488 Papaver somniferum HOM05D004480 ORTHO05D005546 9.5e-150 534.3 343 75.8
FAN10G1488 Fragaria x ananassa HOM05D004480 ORTHO05D005546 4.7e-149 531.9 400 69.5
Dinv39175 Davidia involucrata HOM05D004480 ORTHO05D005546 2.3e-148 529.6 450 63.8
Nitab4.5_0002686g0020 Nicotiana tabacum HOM05D004480 ORTHO05D005546 2.3e-148 529.6 478 62.3
arahy.Tifrunner.gnm1.ann1.JT43NG Arachis hypogaea HOM05D004480 ORTHO05D005546 6.8e-148 528.1 465 61.9
Haze_11102 Corylus avellana HOM05D004480 ORTHO05D005546 8.3e-146 521.2 458 61.4
Cpa.g.sc9.237 Carica papaya HOM05D004480 ORTHO05D005546 1.2e-144 517.3 274 90.1
Oeu061379.1 Olea europaea HOM05D004480 ORTHO05D005546 1.2e-144 517.3 274 89.8
Lju124A7T24 Lonicera japonica HOM05D004480 ORTHO05D005546 4.7e-141 505.4 279 85.3
COL.COLO4_23990 Corchorus olitorius HOM05D004480 ORTHO05D005546 1.4e-140 503.8 393 68.2
Rhsim09G0001300 Rhododendron simsii HOM05D004480 ORTHO05D005546 1.2e-139 500.7 431 62.6
CAN.G574.17 Capsicum annuum HOM05D004480 ORTHO05D005546 1.1e-137 494.2 432 66.4
Mapoly0052s0036 Marchantia polymorpha HOM05D004480 ORTHO05D005546 4.1e-137 492.3 400 61.5
SMO203G0211 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 6.0e-136 488.4 331 71.6
Pp3c20_22360 Physcomitrium patens HOM05D004480 ORTHO05D005546 2.3e-135 486.5 351 68.9
Lsat_1_v5_gn_5_33821 Lactuca sativa HOM05D004480 ORTHO05D005546 4.3e-134 482.3 394 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3019 Anthoceros agrestis HOM05D004480 ORTHO05D005546 4.7e-133 478.8 328 70.4
unitig_62.g23773 Utricularia gibba HOM05D004480 ORTHO05D005546 6.9e-132 474.9 372 66.9
CDE02G2467 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.8e-131 471.9 471 55.2
AUR62001702 Chenopodium quinoa HOM05D004480 ORTHO05D005546 6.4e-130 468.4 466 56.0
CDE09G0719 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 4.6e-128 462.2 394 62.7
Duzib177G0198 Durio zibethinus HOM05D004480 ORTHO05D005546 1.7e-127 460.3 404 62.9
Aqoxy2G00126 Aquilegia oxysepala HOM05D004480 ORTHO05D005546 5.1e-127 458.8 342 67.0
SHI53263 Sapria himalayana HOM05D004480 ORTHO05D005546 5.3e-124 448.7 334 68.6
CBR_g22944 Chara braunii HOM05D004480 ORTHO05D005546 3.8e-122 442.6 281 73.0
ClCG00G001030 Citrullus lanatus HOM05D004480 ORTHO05D005546 3.8e-122 442.6 421 59.6
CDE02G0168 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 9.6e-118 427.9 359 61.3
CDE09G0674 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 2.5e-110 403.3 453 53.2
ClCG10G003270 Citrullus lanatus HOM05D004480 ORTHO05D005546 5.3e-108 395.6 572 45.6
CDE09G1409 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 5.1e-103 379.0 446 51.3
PRCOL_00001861 Prasinoderma coloniale HOM05D004480 ORTHO05D005546 2.8e-101 373.2 327 56.0
AUR62020079 Chenopodium quinoa HOM05D004480 ORTHO05D005546 3.1e-100 369.8 471 48.8
MCO09G317 Micromonas commoda HOM05D004480 ORTHO05D005546 5.3e-100 369.0 335 56.1
CDE09G0134 Ceratophyllum demersum HOM05D004480 ORTHO05D005546 1.1e-97 361.3 286 64.3
SEGI_41177 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 6.3e-93 345.5 240 70.0
Migut.O00494 Erythranthe guttata HOM05D004480 ORTHO05D005546 1.4e-81 307.8 167 90.4
Cre03.g159900 Chlamydomonas reinhardtii HOM05D004480 ORTHO05D005546 2.4e-76 290.4 258 57.4
Ciclev10020879m.g Citrus clementina HOM05D004480 ORTHO05D005546 6.1e-56 222.6 343 42.6
Cfa009489 Carpinus fangiana HOM05D004480 ORTHO05D005546 5.4e-52 209.5 382 35.9
SMO327G0006 Selaginella moellendorffii HOM05D004480 ORTHO05D005546 3.7e-37 160.2 120 68.3
ClCG00G000020 Citrullus lanatus HOM05D004480 ORTHO05D005546 2.7e-35 154.1 397 32.2
HPP92_020625 Vanilla planifolia HOM05D004480 ORTHO05D005546 1.4e-31 141.7 116 63.8
SEGI_14248 Sequoiadendron giganteum HOM05D004480 ORTHO05D005546 8.3e-29 132.5 81 77.8
Zm00001eb233680 Zea mays HOM05D009386 ORTHO05D011419 8.3e-29 132.5 168 47.6
Zm00001eb393850 Zea mays HOM05D009386 ORTHO05D011419 2.9e-21 107.5 101 56.4
Zm00001eb011520 Zea mays HOM05D009386 ORTHO05D011419 1.9e-20 104.8 142 45.8
FAN07G0363 Fragaria x ananassa HOM05D004480 ORTHO05D005546 2.3e-18 97.8 163 41.1
Lju124A7T25 Lonicera japonica HOM05D004480 ORTHO05D005546 3.4e-06 57.4 197 28.4


User provided reference genes

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